| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,779,767 | A→T | 9.9% | pseudogene (12/2253 nt) | ygaQ → | uncharacterized protein; putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,779,767 | 0 | A | T | 9.9% | 664.4 / 53.7 | 213 | pseudogene (12/2253 nt) | ygaQ | uncharacterized protein; putative enzyme |
| Reads supporting (aligned to +/- strand): ref base A (106/86); new base T (15/6); total (121/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.90e-01 | |||||||||||
Only 100 of 228 total aligned reads displayed.
ACAGATTTAAGCATTATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCAAGG > CP009273/2779619‑2779916 | cAGATTTAAGCATTATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATaaa > 2:4274310/1‑150 (MQ=255) gATTTAAGCATTATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAAc > 2:1999354/1‑150 (MQ=255) tttAAGCATTATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCa > 2:2836003/1‑150 (MQ=255) tttAAGCATTATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCa < 1:1526393/150‑1 (MQ=255) ttAAGCATTATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAg < 1:216414/150‑1 (MQ=255) aGCATTATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGAc > 1:3322835/1‑150 (MQ=255) ttATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAg > 2:1310822/1‑150 (MQ=255) ttATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAg < 2:2224989/150‑1 (MQ=255) tATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGa > 2:3968567/1‑150 (MQ=255) tATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGa > 2:647667/1‑150 (MQ=255) tATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGa > 1:1323377/1‑150 (MQ=255) aTCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGaa > 1:3857985/1‑150 (MQ=255) aTCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGaa > 1:1649002/1‑150 (MQ=255) ttttCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAAttt < 1:4012480/150‑1 (MQ=255) tttCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTa < 1:1696874/150‑1 (MQ=255) ttCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTAc > 2:3213360/1‑150 (MQ=255) cATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTa < 1:3464067/150‑1 (MQ=255) ataAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCg > 1:2964848/1‑150 (MQ=255) ataAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCg > 1:1823457/1‑150 (MQ=255) aaaTATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGAc > 1:2341790/1‑150 (MQ=255) aaTATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACa > 1:4223978/1‑150 (MQ=255) atatTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACaa > 1:3704573/1‑150 (MQ=255) tatTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAAc < 1:1499232/150‑1 (MQ=255) atTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAAcc > 2:749534/1‑150 (MQ=255) atTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAAcc > 2:1091171/1‑150 (MQ=255) ggATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCca > 2:2300648/1‑150 (MQ=255) ggATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCca < 2:3625068/150‑1 (MQ=255) aTAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCcaca > 1:1028963/1‑150 (MQ=255) aaaaGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACAtt < 2:3818947/150‑1 (MQ=255) aaaGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTg < 1:2947385/150‑1 (MQ=255) aaGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGt > 1:3258360/1‑150 (MQ=255) aaGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGt > 1:2750364/1‑150 (MQ=255) tAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTAt > 2:3297251/1‑150 (MQ=255) aGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATc > 1:44024/1‑150 (MQ=255) aGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATc > 1:43658/1‑150 (MQ=255) aCATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATg > 2:3486301/1‑150 (MQ=255) tttGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGATGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACAtt < 2:3589916/150‑1 (MQ=255) tGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTAc > 2:2758581/1‑150 (MQ=255) gCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACt < 1:1752583/150‑1 (MQ=255) gCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACt < 1:1260178/150‑1 (MQ=255) cAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTg > 1:1373015/1‑150 (MQ=255) aaTTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGa > 1:4272811/1‑150 (MQ=255) tACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACAATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTAACTATCGACAACCCCACATTGTTATCATGGAACATTACTGACgg > 1:3110333/1‑150 (MQ=255) tttCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGa < 1:2447506/150‑1 (MQ=255) ttCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGAt > 1:3456885/1‑150 (MQ=255) ttCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGAt < 2:4367394/150‑1 (MQ=255) tCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATc < 1:749757/150‑1 (MQ=255) cacaACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCt < 1:3407044/150‑1 (MQ=255) acaacaATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTa < 2:3030441/150‑1 (MQ=255) caaTTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAAtt < 2:4069706/150‑1 (MQ=255) aaTTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTc < 1:2315735/150‑1 (MQ=255) ttAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCa > 1:1224873/1‑150 (MQ=255) ttAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCa > 2:478853/1‑150 (MQ=255) ttAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTCTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCa < 1:400546/150‑1 (MQ=255) aaaCATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCaaa > 2:1035956/1‑150 (MQ=255) aaCATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAAt > 2:2186813/1‑150 (MQ=255) aaCATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAAt > 2:2541258/1‑150 (MQ=255) aTTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTaa > 1:4521201/1‑150 (MQ=255) aTTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTaa > 2:2736346/1‑150 (MQ=255) aTTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTaa > 2:2578921/1‑150 (MQ=255) aTTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTGTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTaa > 2:102209/1‑150 (MQ=255) ttttATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAAt > 1:1286677/1‑150 (MQ=255) ttttATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAAt < 1:3554654/150‑1 (MQ=255) ttATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATAc < 1:4121352/150‑1 (MQ=255) tATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACa > 2:1933905/1‑150 (MQ=255) aTGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACAt > 2:4110892/1‑150 (MQ=255) tttCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAg > 2:2881175/1‑150 (MQ=255) ccGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAat < 1:3516381/150‑1 (MQ=255) cGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAata < 2:4605257/150‑1 (MQ=255) gTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAatat > 1:1218537/1‑150 (MQ=255) tataCATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATc < 2:424604/150‑1 (MQ=255) ataCATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCt < 1:3957952/150‑1 (MQ=255) ataCATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCGGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCt < 2:2121026/150‑1 (MQ=255) catcatATTACTCTACCATTAGAGGAACTTTATAATGTTTTCAATAAAACCAGGACCCAGAAATTTACCTAACGACAACCCCACAATGTTATCATGGAACATTACTGACGGGGAACTAAATTCCAAATTAAATACATAAGAATATCTaaa > 1:1704465/1‑150 (MQ=255) tcatATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACt > 2:1401642/1‑150 (MQ=255) tcatATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACt > 1:1693495/1‑150 (MQ=255) catATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTg > 1:742922/1‑150 (MQ=255) atatTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAATTTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGt > 1:4443681/1‑150 (MQ=255) atatTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGt > 2:604477/1‑150 (MQ=255) tatTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGta > 1:1909884/1‑150 (MQ=255) atTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGtat > 2:572793/1‑150 (MQ=255) atTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCAAGAAATTTACCTATCGAAAACCCCACATTGTTATCATGGAACTTTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGtat < 1:2002810/150‑1 (MQ=255) ttACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGtata > 1:3916563/1‑150 (MQ=255) ctctACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACa > 1:2599232/1‑150 (MQ=255) ctctACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACa < 1:2622628/150‑1 (MQ=255) tctACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACaa > 2:1625574/1‑150 (MQ=255) tctACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACaa < 2:1321664/150‑1 (MQ=255) aCCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAata > 2:3191104/1‑150 (MQ=255) aTTAGAGGAACTTTATTATGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAAtatta > 1:2262828/1‑150 (MQ=255) tAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATattatt < 1:379745/150‑1 (MQ=255) aCTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCtt < 1:683661/150‑1 (MQ=255) attatGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGa < 1:1081354/150‑1 (MQ=255) attatGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAAATGTATAACAAATATTATTAATTCTTGTTGa > 1:4171693/1‑150 (MQ=255) atGTTTTCTATTAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGTAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATATAAACTGTATAACAAATATTATTAATTCTTGTGGAGtt > 2:1296490/1‑150 (MQ=255) atGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGtt > 1:4602379/1‑150 (MQ=255) atGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGtt > 2:812512/1‑150 (MQ=255) tataAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCa > 1:977853/1‑150 (MQ=255) taAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCAAg > 2:4304475/1‑150 (MQ=255) aaaaCCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCAAgg > 1:73373/1‑150 (MQ=255) aaaaCCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTATTGTGGAGTTTACCCTCAAgg > 1:73430/1‑150 (MQ=255) | ACAGATTTAAGCATTATCCTTTTCCATATAAATATTGGATAAAAGTAGGACATCTGTTTGCAATTACTTTCACAACAATTAAACATTTTTATGTTTCCGTATACATCATATTACTCTACCATTAGAGGAACTTTATTATGTTTTCTATAAAACCAGGACCCAGAAATTTACCTATCGACAACCCCACATTGTTATCATGGAACATTACTGACGGGGATCTAAATTCCAAATTAAATACATTAGAATATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCAAGG > CP009273/2779619‑2779916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |