| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,878,668 | G→T | 100% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,878,668 | 0 | G | T | 98.6% | 960.3 / 3.5 | 284 | V637V (GTC→GTA) | ygcB | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| Reads supporting (aligned to +/- strand): ref base G (1/3); new base T (118/161); total (120/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 284 total aligned reads displayed.
CAAAATGGTGGCAACAGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACGACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCGTGTTATTTAGCTC > CP009273/2878521‑2878814 | caAAATGGTGGCAACAGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACGAc > 2:1825801/1‑150 (MQ=255) tggtggCAACAGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTggg > 2:4085458/1‑150 (MQ=255) gtggCAACAGGAATCTCAATACCAGCGGGACGATTTTTGCGATGATGGCGATGTAAACTGCCCAATCGTTGGAAAAGCATATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGtt < 2:2471655/150‑1 (MQ=255) gtggCAACAGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGtt < 2:3404294/150‑1 (MQ=255) tggCATCAGGAATCTCAAAACCTGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTg < 2:1635242/150‑1 (MQ=255) tggCAACAGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTg < 2:2137059/150‑1 (MQ=255) cAACAGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGa > 2:1202418/1‑150 (MQ=255) aCAGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACa > 1:3167327/1‑150 (MQ=255) aGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAg < 1:611247/150‑1 (MQ=255) ggAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCACAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGt < 2:2364926/150‑1 (MQ=255) ggAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGt < 2:3725564/150‑1 (MQ=255) aaTCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTAt < 1:2906847/150‑1 (MQ=255) aTCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATc < 1:1082769/150‑1 (MQ=255) aaaCCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCa < 1:1044159/150‑1 (MQ=255) aaCCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCaa < 2:1401791/150‑1 (MQ=255) aCCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCTTCCAAc < 2:3542746/150‑1 (MQ=255) aCCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAAc < 2:630296/150‑1 (MQ=255) cAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACAt < 2:3135897/150‑1 (MQ=255) cAGCGGGACGATATGTGCGATGATGGCGATGTAAACGGCACAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACAt < 2:1546459/150‑1 (MQ=255) cgCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACAtt < 2:842873/149‑1 (MQ=255) cGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTc < 1:3576938/150‑1 (MQ=255) gACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCt > 2:369460/1‑150 (MQ=255) gATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTcc < 2:108679/150‑1 (MQ=255) gATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTcc < 1:523403/150‑1 (MQ=255) atatTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTccc > 1:3370828/1‑150 (MQ=255) tatTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCa < 2:2794806/150‑1 (MQ=255) atTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCAt < 2:2650006/150‑1 (MQ=255) atTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCAt > 2:3814707/1‑150 (MQ=255) ttGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCAttt < 1:2385255/150‑1 (MQ=255) cGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTg < 2:491253/150‑1 (MQ=255) gatgGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGa < 1:3444656/150‑1 (MQ=255) atgGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGaa > 1:4444462/1‑150 (MQ=255) ggCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAAt < 1:4316391/150‑1 (MQ=255) ggCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAAt > 2:475878/1‑150 (MQ=255) gATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGc < 1:2044352/150‑1 (MQ=255) aTGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCt < 2:823201/150‑1 (MQ=255) aTGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCt > 1:4244352/1‑150 (MQ=255) gTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCtaa < 2:4230221/150‑1 (MQ=255) tAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCtaat < 2:3497760/150‑1 (MQ=255) aaaCGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCtaata > 1:353229/1‑150 (MQ=255) ggCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTc < 1:218130/150‑1 (MQ=255) gCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCg < 2:2070935/150‑1 (MQ=255) cAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGAtt < 1:3809757/150‑1 (MQ=255) aaTCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATtc > 1:2435682/1‑150 (MQ=255) gTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCACTGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCtt < 2:2197601/150‑1 (MQ=255) gTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCtt > 1:900101/1‑150 (MQ=255) ttGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCttt < 2:2691640/150‑1 (MQ=255) ttGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCttt < 1:2954509/150‑1 (MQ=255) ggAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCttttt < 1:4088230/150‑1 (MQ=255) aaaaGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCa < 2:1640886/150‑1 (MQ=255) aaaaGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCa < 2:261302/150‑1 (MQ=255) aGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCacga > 1:734350/1‑150 (MQ=255) aGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCacga > 2:603138/1‑150 (MQ=255) gCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCacgac < 2:3737900/150‑1 (MQ=255) gCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCacgac < 1:1915796/150‑1 (MQ=255) aTCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATc > 1:4571574/1‑150 (MQ=255) aTCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATc > 1:1763624/1‑150 (MQ=255) tCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCg < 1:1267883/150‑1 (MQ=255) cTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGt > 2:2312004/1‑150 (MQ=255) ggACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGc < 2:4336141/150‑1 (MQ=255) cAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTa > 2:1141470/1‑150 (MQ=255) aTGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTaaa > 1:873665/1‑150 (MQ=255) aTGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTaaa < 1:1488283/150‑1 (MQ=255) gCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAgc < 1:4426822/150‑1 (MQ=255) cTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAgcg < 1:3842004/150‑1 (MQ=255) tGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAgcgc < 2:3880972/150‑1 (MQ=255) tGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAgcgc > 1:54903/1‑150 (MQ=255) aGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAgcgcgc > 2:2896883/1‑150 (MQ=255) tAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCAACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCAt > 1:2895609/1‑150 (MQ=255) aTTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGa < 1:4392474/150‑1 (MQ=255) aTTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGa < 1:1972607/150‑1 (MQ=255) tAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGaaa > 2:4274563/1‑150 (MQ=255) tAACCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCAGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGaaa > 2:4507648/1‑150 (MQ=255) aaCCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAAc > 2:4548947/1‑150 (MQ=255) aCCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACa > 1:4119782/1‑150 (MQ=255) aCCAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACa > 1:2323437/1‑150 (MQ=255) cAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACaaa > 2:3426360/1‑150 (MQ=255) cAATCAAAATCAACGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACaaa > 1:3222631/1‑150 (MQ=255) aatcaaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAAt < 1:2369836/150‑1 (MQ=255) aatcaaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAAt > 1:3998579/1‑150 (MQ=255) aatcaaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAAt < 1:1186497/150‑1 (MQ=255) atcaaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATc > 1:3503243/1‑150 (MQ=255) tcaaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCt < 2:2171989/150‑1 (MQ=255) caaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCta < 2:1705047/150‑1 (MQ=255) aaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCATGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCtat > 2:3994959/1‑150 (MQ=255) aaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCtat > 1:4513959/1‑150 (MQ=255) aaaatcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCtat > 1:2412742/1‑150 (MQ=255) aaatcaaCGTCGAGTTATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCtata > 2:2505314/1‑150 (MQ=255) tcaaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCt > 1:2669834/1‑150 (MQ=255) caaCGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTa > 1:2487278/1‑150 (MQ=255) cGTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACtt > 1:3695569/1‑150 (MQ=255) gTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTg > 2:950048/1‑150 (MQ=255) gTCGAGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTg > 2:1435196/1‑150 (MQ=255) aGTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCgtg < 1:25904/150‑1 (MQ=255) gTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCgtgt < 1:3344306/150‑1 (MQ=255) gTGATTGTTCCACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTGTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCgtgt < 2:3286799/150‑1 (MQ=255) ttGTTCCACGACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCGTGTTAtt < 2:1334317/150‑1 (MQ=255) ccACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCGTGTTATTTAGCt < 2:2946539/150‑1 (MQ=255) cACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCGTGTTATTTAGCTc > 2:4615131/1‑150 (MQ=255) cACTACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCGTGTTATTTAGCTc < 1:3109485/150‑1 (MQ=255) | CAAAATGGTGGCAACAGGAATCTCAAAACCAGCGGGACGATATTTGCGATGATGGCGATGTAAACGGCCCAATCGTTGGAAAAGCAAATCTGCAGGACAATGCTGAGTAATTAACCAATCAAAATCAACGTCGAGTGATTGTTCCACGACCTGGGTTGCGACAAGTATCCGTCCAACATTTCGCTTCCCATTTTTGCCGAAATTGCTAATAACTCGATTCTCTTTTTCACGACGATCGTTCAGCGTAAAGCGCGCATGAAACAAATCTATATCTACTTGCGTGTTATTTAGCTC > CP009273/2878521‑2878814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |