| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,634,084 | C→A | 33.9% | intergenic (+179/‑138) | uspA → / → dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,634,084 | 0 | C | A | 33.9% | 454.7 / 241.3 | 270 | intergenic (+179/‑138) | uspA/dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
| Reads supporting (aligned to +/- strand): ref base C (72/106); new base A (52/40); total (124/146) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.44e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 288 total aligned reads displayed.
GCATATGCGGGCGTTTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACA > CP009273/3633937‑3634233 | cATATGCGGGCGTTTTGCTTTTTTGCGCGCCATGTTACCATATAAGCGTAAACACCTTATCAGGCCAACGGTCTGCGTAAGCAAAAAAAAAACCCAGCCAATAAAACATTTAAAACCATAAAAATTTCCATCATTAGTGTGATCATATgt > 2:845653/1‑149 (MQ=255) tGCGGGCGTTTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAt < 2:2043209/150‑1 (MQ=255) tGCGGGCGTTTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAt < 2:2889071/150‑1 (MQ=255) gggCGTTTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtttt > 2:3120105/1‑150 (MQ=255) gggCGATTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtttt < 1:3369237/150‑1 (MQ=255) ggCGTTTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTc < 1:2159308/150‑1 (MQ=255) cGTTTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtg < 2:2594361/150‑1 (MQ=255) cGTTTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtg > 1:1766192/1‑150 (MQ=255) ttttGCTTTTTGGCGCGCCTTGTGACCTGATCAGCGTAAACACCTTCTCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgtt < 2:1084467/150‑1 (MQ=255) gCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTaa < 1:4331826/150‑1 (MQ=255) cTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCCTATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 2:2074774/150‑1 (MQ=255) cTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 2:1057681/150‑1 (MQ=255) cTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAAt > 2:3407679/1‑150 (MQ=255) ttttGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAg < 1:2485087/150‑1 (MQ=255) cgcgcCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCTTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTTTGATCATCTGGTTATTTTCTGTTGTAATAGTGTAtt < 1:4623319/150‑1 (MQ=255) cgcgcCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTAtt > 1:2731525/1‑150 (MQ=255) gcCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCACAGCCAATACAACATTTAACACCATCAAATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTAGTAATAGTGTATAAAt > 1:2157990/1‑150 (MQ=255) cTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCt > 1:1406592/1‑150 (MQ=255) cTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCt > 2:1906800/1‑150 (MQ=255) tGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCCTCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTAt > 2:2827050/1‑150 (MQ=255) tACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCa > 2:505164/1‑150 (MQ=255) aCCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCAc > 2:3386051/1‑150 (MQ=255) cTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCg < 2:1753298/150‑1 (MQ=255) cTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATAATTATTGTGATCATCTGGTTATTTTCTGTTGTAATAGTTTATTAATCTATTCACCg > 2:3000208/1‑150 (MQ=255) cGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAata < 2:22823/150‑1 (MQ=255) cGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAata < 1:551663/150‑1 (MQ=255) gTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAatat > 2:453556/1‑150 (MQ=255) aaCACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTaa > 2:94521/1‑150 (MQ=255) aaCACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTaa < 2:2118285/150‑1 (MQ=255) cacCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGa < 1:87018/150‑1 (MQ=255) acCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGaa > 2:294162/1‑150 (MQ=255) acCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGaa > 2:1586441/1‑150 (MQ=255) cTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAtc < 1:416362/150‑1 (MQ=255) tATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAAtctc > 1:1417840/1‑150 (MQ=255) aTCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATctct < 2:2454634/150‑1 (MQ=255) aTCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATctct < 2:3271159/150‑1 (MQ=255) aTCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATctct > 1:2035781/1‑150 (MQ=255) cTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGa > 1:3290807/1‑150 (MQ=255) tGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGAc < 2:2757547/150‑1 (MQ=255) ccTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCGTCATATTTTCCATCAGTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGa > 2:1214787/1‑150 (MQ=255) cgaCGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGAt < 1:3955601/148‑1 (MQ=255) cTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGAt < 1:985667/150‑1 (MQ=255) tACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATg < 1:4251141/150‑1 (MQ=255) ggTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTaa > 2:3843253/1‑150 (MQ=255) gTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTaaa > 2:1501217/1‑150 (MQ=255) tCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAAc < 2:4298789/150‑1 (MQ=255) cTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACt < 1:1073929/150‑1 (MQ=255) cTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACt > 1:4036245/1‑150 (MQ=255) aCGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTcg < 2:118641/150‑1 (MQ=255) cGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTcgc < 1:2618264/150‑1 (MQ=255) tCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGtt < 1:1345930/150‑1 (MQ=255) ccccAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCtt < 1:1158338/150‑1 (MQ=255) ccccAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCtt > 1:3806702/1‑150 (MQ=255) ccccAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCtt < 2:1417840/150‑1 (MQ=255) cccAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTa > 1:3511884/1‑150 (MQ=255) cccAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTa > 2:3469180/1‑150 (MQ=255) ccAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTAc < 1:4113132/150‑1 (MQ=255) cAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTAcg > 2:2038521/1‑150 (MQ=255) cAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTAcg > 2:2538327/1‑150 (MQ=255) cAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTAGTATCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATAAAAAGAATCTCTGACATATGTAAACATAGTAGCGCGTTATCCCTTActcttt > 2:250714/1‑145 (MQ=255) aacaTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACt < 1:4024361/150‑1 (MQ=255) acaTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACtt < 1:2436350/150‑1 (MQ=255) acaTTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACtt < 1:2034470/150‑1 (MQ=255) acaTTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACtt < 1:752234/150‑1 (MQ=255) caTTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACttt < 1:4504349/150‑1 (MQ=255) caTTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACttt > 2:4619479/1‑150 (MQ=255) aTTTAACACCATCATATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACtttt < 1:2312555/150‑1 (MQ=255) tttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTc < 2:1309237/150‑1 (MQ=255) ttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCa > 1:3780564/1‑150 (MQ=255) ttAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGGTATCCCTTACGCGTTCATACTTTTCa < 2:3690770/150‑1 (MQ=255) acCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATg > 1:1645621/1‑150 (MQ=255) ccATCATATTTTTCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATgg > 2:1858032/1‑150 (MQ=255) catcatATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGt < 1:3902741/150‑1 (MQ=255) catcatATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGt < 1:3836852/150‑1 (MQ=255) atcatATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTa > 1:3611603/1‑150 (MQ=255) atcatATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTa > 1:1200864/1‑150 (MQ=255) atcatATTTTCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTAAGCGTTCATACTTTTCAGGATGGTa > 2:3379969/1‑150 (MQ=255) catATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTAtt < 1:2579598/150‑1 (MQ=255) atatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATTTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTg > 2:324222/1‑150 (MQ=255) tatTTTTCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTgg > 1:2536293/1‑150 (MQ=255) tatTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTgg < 1:266068/150‑1 (MQ=255) tttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAg < 2:1797173/150‑1 (MQ=255) tttCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTGATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAg < 2:3775411/150‑1 (MQ=255) ttCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAgg > 2:1978871/1‑150 (MQ=255) tCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTTTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTAGCGCGTTATCCCTTAAGCGTTCATACTTTTCAGGATGGTATTGGAAGGt > 2:3188850/1‑150 (MQ=255) tCCATCATTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGt > 2:1256617/1‑150 (MQ=255) catcatTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGGTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTta < 1:1811600/150‑1 (MQ=255) atcatTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTACTCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTtaa < 2:2005295/150‑1 (MQ=255) tcatTAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTtaat < 1:94521/150‑1 (MQ=255) tAGTGTGATCATATGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTaataaat > 2:4082008/1‑150 (MQ=255) gtgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGa < 2:3996519/150‑1 (MQ=255) tgATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCATCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATACCTTAAGCGTTCATAATTTTCAGGATGGTATTGGAAGGTTAATAAATATGaa > 2:4268436/1‑150 (MQ=255) gATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAAt < 1:1748807/150‑1 (MQ=255) atcatcTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATa > 2:2652693/1‑150 (MQ=255) tcatcTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATac > 1:2978022/1‑150 (MQ=255) tcatcTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATac > 1:834178/1‑150 (MQ=255) catcTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATaca > 1:2149590/1‑150 (MQ=255) cataTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATaca > 2:4148333/1‑150 (MQ=255) cTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATacaaca < 2:1503753/150‑1 (MQ=255) cTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATacaaca > 1:523274/1‑150 (MQ=255) | GCATATGCGGGCGTTTTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCTATTCACCGCATCAATATTAAGAATCTCTGACAGATGTAAACTTTTTCGCGCGTTATCCCTTACGCGTTCATACTTTTCAGGATGGTATTGGAAGGTTAATAAATATGAATACAACA > CP009273/3633937‑3634233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |