| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,910,487 | C→A | 18.0% | A83A (GCG→GCT) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,910,487 | 0 | C | A | 18.0% | 714.9 / 95.7 | 232 | A83A (GCG→GCT) | atpD | F1 sector of membrane‑bound ATP synthase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base C (79/111); new base A (25/17); total (104/128) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.01e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 234 total aligned reads displayed.
ACTTTGATACCGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCATT > CP009273/3910338‑3910636 | cTTTGATACCGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCg > 2:2216143/1‑150 (MQ=255) tGATACCGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑tt > 2:2409417/1‑150 (MQ=255) tGATACCGGTTTACAGCAGTTCCTGAGAGTGTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑tt > 1:3893155/1‑150 (MQ=255) gATACCGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑ttt < 2:2715027/150‑1 (MQ=255) tACCGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTtac < 2:4154928/150‑1 (MQ=255) aCCGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGTTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGCGTTtac > 1:588048/1‑150 (MQ=255) cGGTTTCCAGCAGTTCCTGAGAGTTTGACANCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTtaccga > 1:4285824/1‑148 (MQ=255) cGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTtaccta < 2:905286/150‑1 (MQ=255) cGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTtaccta < 2:4181080/150‑1 (MQ=255) ggTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTtacctaa > 2:540507/1‑149 (MQ=255) ggTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTtacctac > 2:3566366/1‑150 (MQ=255) ttCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCgg < 1:3389046/150‑1 (MQ=255) tCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCggg < 1:1545315/150‑1 (MQ=255) ccAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTTTACGACCGGGa > 1:1546573/1‑150 (MQ=255) gcagTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACtt < 1:2279218/150‑1 (MQ=255) cagTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTc > 1:187754/1‑150 (MQ=255) cagTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTc < 2:1789666/150‑1 (MQ=255) agTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAAAGCTCTTCTTCACCGATCTCGCCTTTCATGTCTACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCAACCGGGACTTCa > 2:1399482/1‑150 (MQ=255) gTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCaa < 2:3300072/150‑1 (MQ=255) gTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCaa > 2:475204/1‑150 (MQ=255) gTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCaa > 1:312442/1‑150 (MQ=255) ccTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCg < 1:393486/150‑1 (MQ=255) ccTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCg > 2:2935825/1‑150 (MQ=255) cTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCgg < 2:4304425/150‑1 (MQ=255) cTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCgg < 1:2668212/150‑1 (MQ=255) cTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCgg > 2:4501546/1‑150 (MQ=255) cTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCAACCGGGACTTCAATCgg > 2:4413269/1‑150 (MQ=255) gagaGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGgt < 1:4434454/150‑1 (MQ=255) gagaGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGgt < 1:2238124/150‑1 (MQ=255) agagTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGgtg < 2:209246/150‑1 (MQ=255) agagTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGgtg < 1:1106952/150‑1 (MQ=255) agTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGtt < 2:2835310/150‑1 (MQ=255) agTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGtt < 2:1064464/150‑1 (MQ=255) agTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGtt > 2:4558311/1‑150 (MQ=255) gTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTc < 1:1040384/150‑1 (MQ=255) tttGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTAACAACCGGGACATCAATCGGGTGttag > 2:2136933/1‑148 (MQ=255) cAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTc > 2:68517/1‑150 (MQ=255) aGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCt > 2:4627271/1‑150 (MQ=255) aGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTAACTACCGGGACTTCAATCGGGTGTTCGAGGTCt > 1:3647859/1‑150 (MQ=255) gCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCtt > 2:4058782/1‑150 (MQ=255) ctctTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCttt > 2:483734/1‑150 (MQ=255) ctctTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCAACCGGGAAATAAATCGGGATTTAGAGGACttt > 2:1454908/1‑150 (MQ=255) tctTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTTACCTAACGGGACTTCAATCGGGTGTTCGAGGTCtttt > 2:637761/1‑150 (MQ=255) aGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCa < 1:4331052/150‑1 (MQ=255) aGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGAcc < 2:1629255/150‑1 (MQ=255) tgcGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTTACTACCGGGACTTAAAAAGGGTGTTAGAGGTCTTTTTAATGCAGACCGCGACg > 1:3533492/1‑150 (MQ=255) cgcgGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTTACCAAACCGGACGTCAAAACGGTTTTCGAGGTCATTTACATCCAGAACCCGACGCa > 1:757220/1‑150 (MQ=255) cgcgGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCa < 2:3105140/150‑1 (MQ=255) cgcgGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCa < 2:782722/150‑1 (MQ=255) gTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTATTTTACATCCAGACCGCGACGCCGAcc > 2:4044515/1‑150 (MQ=255) tGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCGACCGGGACTTCAAACGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCg > 2:4331611/1‑150 (MQ=255) tGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCg > 1:4587865/1‑150 (MQ=255) gAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGt < 1:2557936/150‑1 (MQ=255) aaTCGCCCAAAGCTCTTCTTCACCGATCTCGCCTTTCATGTCTACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTTAACAACCCGGACATCAAACGGGTGTTAGAGGTCTTTTAAAACCAGAACGCGACGCAGACCCTc > 2:3983201/1‑150 (MQ=255) atagCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCg < 1:3800468/147‑1 (MQ=255) cccAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCggagg < 2:1687178/150‑1 (MQ=255) cccAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCggagg < 2:3876001/150‑1 (MQ=255) cccAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCggagg < 2:3474561/150‑1 (MQ=255) cccAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCggagg < 2:3474256/150‑1 (MQ=255) cAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGaa < 1:4061241/150‑1 (MQ=255) aaCGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTTAACAACCGGGACATCAATCGGGTGTTCGAGGTCTTTTACAACCAGACCCCGACGCAGACCGGCGGAGGAAc > 1:2766286/1‑150 (MQ=255) aCGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTTAACAACCGGGGCATAAATAGGGTGTTAGAGGTATTTTAAAAACACACCGCGAACCACACCGTCGGCGGAAcc > 1:2047517/1‑150 (MQ=255) ctctTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCGACCGGGACATCAATCGGGTGTTAGAGGTCTTTTACATCCAGACCGCGACGCAGAACGTCGGAGGTACCCaa > 2:1354621/1‑149 (MQ=255) ctctTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTAACTAACCGGAATTAAAAAAGGGGTTCCAGGTCGTTTACAAACACACCGCAACGCACAACGACCGAGGAAACCAt > 2:1577135/1‑150 (MQ=255) ctctTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCAt < 2:3444587/150‑1 (MQ=255) tcttctTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCact > 1:192102/1‑148 (MQ=255) tcttcACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTTACCTACCGGGACATCAATCGGGTGTTAGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTTCg > 1:2164291/1‑150 (MQ=255) cttcACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGa > 1:1707687/1‑150 (MQ=255) ttcACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGAt < 1:2456915/150‑1 (MQ=255) ttcACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGAt < 1:2456858/150‑1 (MQ=255) aCCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGgt < 2:1855043/150‑1 (MQ=255) aTCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑GTTACCTACCGGGACTTAAATAGGGTGTTCGAGGTGTTTTAAATCCAGACCCCGACGCAGACCCTCGGAGGGAACCAATGCGATGgtacgg > 1:3208340/1‑149 (MQ=255) tctcGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGgtacgta < 1:4558311/150‑1 (MQ=255) tctcGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGgtacgta > 2:4081130/1‑150 (MQ=255) ctcGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGgtacgtac < 2:1225060/150‑1 (MQ=255) gCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTAACTACCCGGACTTAAAAAGGGTGTTAGAGGTATTTTAAAAACAGACCCCCACGCAGACCGTCGGAGGCACCCAATTCGATGGTAACTACGaa > 1:434532/1‑149 (MQ=255) cTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATAc > 2:1301979/1‑150 (MQ=255) ttCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATAccg < 1:163549/150‑1 (MQ=255) gTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATAccgccgcc < 1:673402/150‑1 (MQ=255) gTCGACCGGTTCACCCAGTACGTTAATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCTATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATAccgccgcc < 1:1791370/150‑1 (MQ=255) cGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGa < 1:3325496/150‑1 (MQ=255) cGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGa < 1:3135936/150‑1 (MQ=255) cGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGa < 2:1264835/150‑1 (MQ=255) ccGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCCGGACATCAAACGGGTGTTCGAGGTCTTTTACATCCCGACCGCGACGCAGACCCTCGGAGGAACCCCATGCGATGGTACGTACGATACCGCCCCCGAgct > 1:3038516/1‑150 (MQ=255) ggTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCAACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCAAAGCGATGGTACGTACGATACCGCCGCCGAgctgc > 2:3699811/1‑150 (MQ=255) cACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAgctgctgct < 2:4287069/150‑1 (MQ=255) aGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACt < 2:2670635/150‑1 (MQ=255) gTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACtt < 1:61229/150‑1 (MQ=255) gTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCAACCGGGACTTCAATCGGGTGTTAGAGGTCTTTTACATCCAGACCGCGACGCAGACCCTCGGAGGAACCCAATGCGATGGTACGTACGATACCGCCGCCGAGCAGCTGCTGAACtt > 1:290439/1‑150 (MQ=255) tACGTTCATGATACGGCCCAGAGTCGC‑GTTAACGACCGGGACGTCAATCGGGTGTTCGCGGTCTTTTAAATCCAGACCGCGACGCAGACCCTCGGAGGGACCCAATGCGATGGTACCTACGATAACCCCCCCGAGCGGCTGCTGAAcata > 1:948906/1‑147 (MQ=255) cGTTCATTATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCa < 2:3835589/150‑1 (MQ=255) cGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCa < 1:4501546/150‑1 (MQ=255) tGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCa < 1:3473679/150‑1 (MQ=255) cGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGc < 1:4215003/150‑1 (MQ=255) ggCCCAGAGTCGC‑TTTACCAACCGGGACTTCAATAGGGTGTTCGAGGTCTTTTAAATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTAAGTAAGATAACGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCt > 2:1783106/1‑150 (MQ=255) cccAGAGTCGC‑TTTACCTAACGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCAGAACTTCCAGCACCAGACGCTCa > 2:318831/1‑150 (MQ=255) cccAGAGTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCa > 1:1359089/1‑150 (MQ=255) agTAGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTAcc > 1:3427393/1‑150 (MQ=255) gTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCa < 1:2670934/150‑1 (MQ=255) gTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCa > 1:1499714/1‑150 (MQ=255) | ACTTTGATACCGGTTTCCAGCAGTTCCTGAGAGTTTGACAGCTCTTCGTAGGAAGGTGCTGCGCGGTGAATCGCCCAACGCTCTTCTTCACCGATCTCGCCTTTCATGTCGACCGGTTCACCCAGTACGTTCATGATACGGCCCAGAGTCGC‑TTTACCTACCGGGACTTCAATCGGGTGTTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCATT > CP009273/3910338‑3910636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |