| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,990,572 | C→A | 13.4% | I10I (ATC→ATA) | yigB → | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,990,572 | 0 | C | A | 13.4% | 961.2 / 76.4 | 279 | I10I (ATC→ATA) | yigB | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
| Reads supporting (aligned to +/- strand): ref base C (105/136); new base A (13/25); total (118/161) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 289 total aligned reads displayed.
TGTGCAGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGCCTGCGCCAGGC > CP009273/3990423‑3990721 | tgtgCAGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCAtc > 2:346711/1‑150 (MQ=255) tgCAGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCAtctc < 2:3285003/150‑1 (MQ=255) tgctgGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCAc > 1:850363/1‑150 (MQ=255) tgGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCtt > 1:3783309/1‑150 (MQ=255) tgGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCtt > 1:1976555/1‑150 (MQ=255) gggTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAACGGGGGGAAATAATGCGTTTTTACGGGCGTTTGGGGCGCAACTCGGCGCGCACCtt > 2:112968/1‑150 (MQ=255) gggTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCttt < 1:2457178/150‑1 (MQ=255) ggTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTg < 1:46863/150‑1 (MQ=255) gTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGa > 1:3191397/1‑150 (MQ=255) aTGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCt > 2:221653/1‑150 (MQ=255) aTGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCt > 1:1749753/1‑150 (MQ=255) aTGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCt < 1:2600785/150‑1 (MQ=255) tGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTg < 1:1052687/150‑1 (MQ=255) tGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTg > 1:2181735/1‑150 (MQ=255) gCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTgg > 2:2264907/1‑150 (MQ=255) cAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGgat < 1:2438089/150‑1 (MQ=255) aaCCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGgatg > 1:2089793/1‑150 (MQ=255) aaCCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGgatg > 1:1439773/1‑150 (MQ=255) aaCCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGgatg < 1:2834741/150‑1 (MQ=255) gCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGAt < 1:1628203/150‑1 (MQ=255) aTCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAAcc > 2:4323080/1‑150 (MQ=255) cTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGt > 2:3993176/1‑150 (MQ=255) tataCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTc < 2:74418/150‑1 (MQ=255) tataCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTc > 1:2058322/1‑150 (MQ=255) tataCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTc < 2:4310509/150‑1 (MQ=255) tataCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTc < 2:3522749/150‑1 (MQ=255) ataCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTcc > 2:2776631/1‑150 (MQ=255) ataCTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTcc > 1:2828470/1‑150 (MQ=255) aTCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGAt < 2:3154186/150‑1 (MQ=255) cTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGAttt < 2:4515107/150‑1 (MQ=255) cTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGAttt > 2:2561485/1‑150 (MQ=255) gATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTgc > 1:253578/1‑150 (MQ=255) aTTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTgcg > 1:2647716/1‑150 (MQ=255) tCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCAcc < 1:2423173/150‑1 (MQ=255) tCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCAcc < 1:1371022/150‑1 (MQ=255) cAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCATTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACcg < 2:566478/150‑1 (MQ=255) cacCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACcgagc > 2:1471441/1‑150 (MQ=255) acCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACcgagcg < 2:3334886/150‑1 (MQ=255) acCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACcgagcg < 2:1959963/150‑1 (MQ=255) cTTGCCTCGGTGTACGATGCGGCGCATCCACGCTCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACcgagcgag < 1:77786/150‑1 (MQ=255) ttGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCgaga > 2:2663731/1‑150 (MQ=255) gCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAgg < 1:1476853/150‑1 (MQ=255) ccTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGgc < 1:770780/150‑1 (MQ=255) ctctGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTAGCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGgcg < 2:294217/150‑1 (MQ=255) cTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGgcg < 2:344804/150‑1 (MQ=255) cGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCt < 1:3681753/150‑1 (MQ=255) cGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCt > 2:4057287/1‑150 (MQ=255) ggTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCtt < 1:615998/150‑1 (MQ=255) ggTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCtt < 2:4261746/150‑1 (MQ=255) tgtACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTAc > 1:4505755/1‑150 (MQ=255) aCGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCtt < 1:1144671/150‑1 (MQ=255) aCGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCtt < 1:894772/150‑1 (MQ=255) aCGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCtt < 1:4239255/150‑1 (MQ=255) aCGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCtt < 1:4451758/150‑1 (MQ=255) cGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCttt < 1:2048794/150‑1 (MQ=255) cGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCttt < 2:2453119/150‑1 (MQ=255) cGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCttt < 2:2053540/150‑1 (MQ=255) gATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTtg > 1:2736883/1‑150 (MQ=255) gATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTtg < 2:1332185/150‑1 (MQ=255) aTGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTtgt > 1:335735/1‑150 (MQ=255) aTGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTtgt < 1:3761956/150‑1 (MQ=255) gcATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAAt < 1:982334/150‑1 (MQ=255) cACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTatca < 1:3210679/150‑1 (MQ=255) cACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTGTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTatca > 2:85561/1‑150 (MQ=255) aCGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTTCGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTatcat < 1:1526878/150‑1 (MQ=255) aCGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTatcat < 2:21026/150‑1 (MQ=255) aCGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTatcat < 2:114573/150‑1 (MQ=255) gcgcCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATcc < 1:3534964/150‑1 (MQ=255) cgcCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCg < 2:3675820/150‑1 (MQ=255) ccAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGgc < 2:2341380/150‑1 (MQ=255) cAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGgcg < 2:3413767/150‑1 (MQ=255) aaaC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGgcgc < 2:2058890/150‑1 (MQ=255) aaaC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGgcgc > 2:3461673/1‑150 (MQ=255) aC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTg < 2:1104876/150‑1 (MQ=255) gggggAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTgcg < 1:1573562/150‑1 (MQ=255) aaaTAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCt > 1:3592414/1‑150 (MQ=255) aataatGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCtt < 2:111716/150‑1 (MQ=255) aatGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCa > 1:681621/1‑150 (MQ=255) aatGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCa > 1:3000986/1‑150 (MQ=255) atGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAg < 2:3039325/150‑1 (MQ=255) cGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAAt < 1:1553859/150‑1 (MQ=255) gTTTTTACCGGCCTTTGGGGCGCCTCTCGGCGCTCACCTTTGACCTGGATGAGACCCTTTACGTGAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAATTTATCATCCGGCGCTGCGCAGCTTCCAGAATg < 1:346704/150‑1 (MQ=255) gTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATg > 2:4118711/1‑150 (MQ=255) gTTTTTACCGGCCTTTGGGGCGCATATCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATg < 1:1687125/150‑1 (MQ=255) ttttACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATACCCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGaa < 2:425018/150‑1 (MQ=255) cGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTg < 2:1601059/150‑1 (MQ=255) cGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCGTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTg > 1:3953834/1‑150 (MQ=255) ggCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGc < 2:3859928/150‑1 (MQ=255) ggCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCAGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCATCTTCCAGAATGAAGATCTGc > 2:1856529/1‑150 (MQ=255) gCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCa > 1:50407/1‑150 (MQ=255) cTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAAc > 2:709342/1‑150 (MQ=255) cTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAAc < 2:687217/150‑1 (MQ=255) tGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGcc < 1:4112236/150‑1 (MQ=255) tGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGcc < 1:2230789/150‑1 (MQ=255) tGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGcc < 2:128021/150‑1 (MQ=255) ggggCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGCCt < 2:1976304/150‑1 (MQ=255) ggggCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGCCt < 2:1976410/150‑1 (MQ=255) gcgcATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGCCTgcg < 1:3086880/150‑1 (MQ=255) cATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGCCTGCGCCa > 1:1242873/1‑150 (MQ=255) ctcGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCTAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGACGATCTGCAACGCCTGCGCCAGGc < 1:4299677/150‑1 (MQ=255) | TGTGCAGGAGCTGCTGGGTCATGCCAACCTCTCCACCACGCAAATCTATACTCATCTTGATTTTCAACACCTTGCCTCGGTGTACGATGCGGCGCATCCACGCGCCAAAC‑GGGGGAAATAATGCGTTTTTACCGGCCTTTGGGGCGCATCTCGGCGCTCACCTTTGACCTGGATGATACCCTTTACGATAACCGTCCGGTGATTTTGCGCACCGAGCGAGAGGCGCTTACCTTTGTGCAAAATTATCATCCGGCGCTGCGCAGCTTCCAGAATGAAGATCTGCAACGCCTGCGCCAGGC > CP009273/3990423‑3990721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |