| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,516,177 | C→A | 13.1% | D177Y (GAT→TAT) | sgcR ← | putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,516,177 | 0 | C | A | 13.1% | 1052.9 / 82.6 | 301 | D177Y (GAT→TAT) | sgcR | putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (146/115); new base A (18/22); total (164/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 304 total aligned reads displayed.
TAGTGTTGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGATTTTAA > CP009273/4516028‑4516326 | tAGTGTTGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATc > 2:4112058/1‑150 (MQ=255) aGTGTTGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCg > 1:4176924/1‑150 (MQ=255) tgtTGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCAGTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCa > 2:3807766/1‑150 (MQ=255) gCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGgag < 2:1956544/150‑1 (MQ=255) tACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGAt > 1:3934213/1‑150 (MQ=255) aCAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATa > 2:1237439/1‑150 (MQ=255) aCAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATa < 1:1469507/150‑1 (MQ=255) aGCATGCGGCTCAACGGCATCAAATTTTTAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACATCAAAAATGGTGGCATTGGTGATCCCCGTCTCCAGCTACAGCGCATCGCAGGAGATaaa > 2:1136126/1‑150 (MQ=255) gCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAAc < 2:3730277/150‑1 (MQ=255) gCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAAc > 1:1044912/1‑150 (MQ=255) cATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACg < 2:173732/150‑1 (MQ=255) tGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCa < 1:2223509/150‑1 (MQ=255) ggCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGt > 2:2401032/1‑150 (MQ=255) ggCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGt > 2:281812/1‑150 (MQ=255) tCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCt < 2:1571901/150‑1 (MQ=255) cGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACgg < 2:3908200/150‑1 (MQ=255) gCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGaa > 1:4266883/1‑150 (MQ=255) gCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGaa > 1:2343525/1‑150 (MQ=255) aTCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGaaaa > 1:1082697/1‑150 (MQ=255) aTTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCAt > 1:3816203/1‑150 (MQ=255) ttttGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCAtt < 1:3323103/150‑1 (MQ=255) ttttGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCAtt < 1:3193450/150‑1 (MQ=255) tttGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTg < 1:1375084/150‑1 (MQ=255) tGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGat < 1:3478956/150‑1 (MQ=255) aGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGatca < 1:343647/150‑1 (MQ=255) gTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGatcat < 1:66463/150‑1 (MQ=255) gTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGatcat < 1:4336203/150‑1 (MQ=255) tGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGatcatc > 1:3001983/1‑150 (MQ=255) tGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGatcatc > 1:1781592/1‑150 (MQ=255) tCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTcc < 2:283147/150‑1 (MQ=255) cGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCa > 1:2927251/1‑150 (MQ=255) cGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCa > 2:3486301/1‑150 (MQ=255) cGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCa > 1:1690138/1‑150 (MQ=255) ggCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAg > 2:4208781/1‑150 (MQ=255) cATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAgcgc > 2:682830/1‑150 (MQ=255) aTGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGcc < 1:3471644/150‑1 (MQ=255) agaATAACTTCACGCGAGCGTGGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTTATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGa > 1:4327272/1‑150 (MQ=255) gaATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGAc < 1:2858126/150‑1 (MQ=255) aaTAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGAct > 1:693929/1‑150 (MQ=255) aaTAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGAct > 1:440307/1‑150 (MQ=255) aTAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGActc > 2:856950/1‑150 (MQ=255) cTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACtctctc < 1:1970622/150‑1 (MQ=255) tCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCt > 1:3383203/1‑150 (MQ=255) cgcgAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTAcc > 2:3614017/1‑150 (MQ=255) cgAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGa > 1:3279443/1‑150 (MQ=255) cgAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGa > 2:1862368/1‑150 (MQ=255) gAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGaa < 1:75772/150‑1 (MQ=255) gAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGaa < 1:1747434/150‑1 (MQ=255) gCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGaaaa < 1:2500471/150‑1 (MQ=255) cGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGaaaaa < 2:2740601/150‑1 (MQ=255) tGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATaa < 1:607478/150‑1 (MQ=255) gAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAAc < 2:3707280/150‑1 (MQ=255) gAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAAc < 2:1663225/150‑1 (MQ=255) aataatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAAcc > 1:2641011/1‑150 (MQ=255) ataatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTATCGAAAAATAACCt > 1:424407/1‑150 (MQ=255) ataatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCt < 1:1300938/150‑1 (MQ=255) taatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTg < 2:1585707/150‑1 (MQ=255) taatCCGTGTTATCACCCCGACATCAAACATGGTGGCATTGGTTATCCCATTCTCCATCGACATCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCTCCAGACTCTCTCCTACAGAAAAATAACATg > 2:1329666/1‑150 (MQ=255) aatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTgg < 1:4235576/150‑1 (MQ=255) ccGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCg > 2:2295753/1‑150 (MQ=255) ccGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCg > 2:2044192/1‑150 (MQ=255) cGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGa > 2:2865316/1‑150 (MQ=255) gtgtTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGaa < 1:1237439/150‑1 (MQ=255) tgtTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAAt < 2:3654149/150‑1 (MQ=255) ttttCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCa > 2:637427/1‑150 (MQ=255) tttCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAg > 2:2948813/1‑150 (MQ=255) tttCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAg > 2:259400/1‑150 (MQ=255) cACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcc < 2:3714467/150‑1 (MQ=255) cACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcc > 2:2967324/1‑150 (MQ=255) cACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcc > 2:2453418/1‑150 (MQ=255) cccGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcctcc < 1:3944354/150‑1 (MQ=255) cccGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcctcc > 2:3449708/1‑150 (MQ=255) cccGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcctcc < 1:3972865/150‑1 (MQ=255) gACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCTGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGAt < 1:225547/150‑1 (MQ=255) gACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGAt > 2:3362415/1‑150 (MQ=255) gACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGAt > 2:564684/1‑150 (MQ=255) cTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAAt > 1:3694326/1‑150 (MQ=255) tggtggCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACttt < 2:1176621/150‑1 (MQ=255) tggCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCca < 2:4474070/150‑1 (MQ=255) ggCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCcac < 1:2072298/150‑1 (MQ=255) aTTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATg > 2:1475150/1‑150 (MQ=255) gTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGa < 2:179433/150‑1 (MQ=255) aTCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGaaaa < 2:4311730/150‑1 (MQ=255) ccccGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACa > 1:4499436/1‑150 (MQ=255) ccccGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACa < 1:970988/150‑1 (MQ=255) ccccGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACa < 2:1044912/150‑1 (MQ=255) ccGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGc < 1:1785814/150‑1 (MQ=255) ccGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGc < 1:4115921/150‑1 (MQ=255) cGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGcc < 1:846132/150‑1 (MQ=255) gTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGccc > 1:3066807/1‑150 (MQ=255) tcCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGt > 2:1850351/1‑150 (MQ=255) gCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCAt < 2:2011653/150‑1 (MQ=255) gCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCAt < 2:107913/150‑1 (MQ=255) gACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTg > 2:3147276/1‑150 (MQ=255) gACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTg < 1:1891588/150‑1 (MQ=255) aCAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTgg < 1:477091/150‑1 (MQ=255) aCAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTgg < 1:4562341/150‑1 (MQ=255) aGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCg < 2:3552877/150‑1 (MQ=255) gcATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGAtt < 2:3306242/150‑1 (MQ=255) gcATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGAtt > 2:2178/1‑150 (MQ=255) | TAGTGTTGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGATTTTAA > CP009273/4516028‑4516326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |