| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,575,640 | C→A | 11.2% | pseudogene (993/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,575,640 | 0 | C | A | 11.2% | 1035.5 / 66.8 | 286 | pseudogene (993/3567 nt) | hsdR | pseudogene, premature stop codon, host restriction; endonuclease R |
| Reads supporting (aligned to +/- strand): ref base C (136/118); new base A (18/14); total (154/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
Only 100 of 291 total aligned reads displayed.
CAGCTGGTTTCATACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTGCGCCTTTGGAGAAGCGCAGGGT > CP009273/4575491‑4575789 | cAGCTGGTTTCATACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTc > 2:1881925/1‑150 (MQ=255)cAGCTGGTTTCATACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTc > 1:470380/1‑150 (MQ=255) aGCTGGTTTCATACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCg > 1:3177576/1‑150 (MQ=255) cTGGTTTCATACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGcc < 2:452254/150‑1 (MQ=255) cATACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTacca < 1:1938650/150‑1 (MQ=255) aTACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTaccac > 1:3438339/1‑150 (MQ=255) tACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTaccacc < 2:828437/150‑1 (MQ=255) aCTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACcg > 1:2142359/1‑150 (MQ=255) tGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGAt > 1:3626582/1‑150 (MQ=255) tGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTACCCGCAGGAAGCCAAGATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATAGTTACGTTTCGCCTCTACCACCGCGAt > 2:2710194/1‑150 (MQ=255) ggCACTGCTTCATGCACTTCATCCGGTGAGTAGTACTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATg < 2:2806383/150‑1 (MQ=255) aCTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGt < 1:3718432/150‑1 (MQ=255) tGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGttt < 2:1860721/150‑1 (MQ=255) tGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGttt > 1:1432501/1‑150 (MQ=255) tGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGttt > 2:4209716/1‑150 (MQ=255) tGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGttt > 1:2769567/1‑150 (MQ=255) cTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGa < 2:1604509/150‑1 (MQ=255) ttCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAg > 1:3597063/1‑150 (MQ=255) ttCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAg < 1:3543919/150‑1 (MQ=255) tGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCg < 1:3815229/150‑1 (MQ=255) gCACTTCATCCTGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTTTTACGTTTCGACTCTTCCACCGCGATGGGTTTGAGGCCGa < 2:2519341/150‑1 (MQ=255) aCTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACa > 2:2080864/1‑150 (MQ=255) aCTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACa > 1:2845610/1‑150 (MQ=255) cTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACaa < 2:3219554/150‑1 (MQ=255) tCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAAc < 2:2020441/150‑1 (MQ=255) ccGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGca < 2:1782064/150‑1 (MQ=255) gTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACAt < 2:3093239/150‑1 (MQ=255) gTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACAt > 1:153730/1‑150 (MQ=255) gAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATaa < 1:2011341/150‑1 (MQ=255) gtagtGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTGACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATc < 2:1729259/150‑1 (MQ=255) tagtGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATcc < 2:490257/150‑1 (MQ=255) agtGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCg > 2:792712/1‑150 (MQ=255) agtGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCg > 1:1240503/1‑150 (MQ=255) agtGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCg < 2:892175/150‑1 (MQ=255) agCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCa > 2:2257732/2‑150 (MQ=255) gCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCaa < 1:2101266/150‑1 (MQ=255) cTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCaaa > 1:194799/1‑150 (MQ=255) aagcaagGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGcc < 2:1092551/150‑1 (MQ=255) agcaagGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGccc < 2:4532986/150‑1 (MQ=255) agcaagGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGccc > 1:4183169/1‑150 (MQ=255) caagGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTg > 1:67939/1‑150 (MQ=255) aagGTTTCCCGCAGGAAGCCATTCTCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCTATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGa > 2:1439486/1‑150 (MQ=255) aagGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGa > 2:3565599/1‑150 (MQ=255) ggTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGAtt < 2:4367014/150‑1 (MQ=255) gTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTa > 1:3758178/1‑150 (MQ=255) gTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTa > 2:4482484/1‑150 (MQ=255) tttCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTAc > 1:2356295/1‑150 (MQ=255) tttCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTAc < 2:3544056/150‑1 (MQ=255) cctcAGGAAGCCATTTTCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGTTATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGt < 2:3455127/147‑1 (MQ=255) cGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGtt < 2:534386/150‑1 (MQ=255) cAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTc > 1:436652/1‑150 (MQ=255) aGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCa > 2:285832/1‑150 (MQ=255) ggAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCAt < 1:1012581/150‑1 (MQ=255) ggAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCAt > 1:1628312/1‑150 (MQ=255) ggAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCAt > 2:1297620/1‑150 (MQ=255) gAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCCACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATc > 1:81059/1‑150 (MQ=255) aaGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCt < 2:1895728/150‑1 (MQ=255) gCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATAATGTTACGTTGCGCCTCTACCACAGCGATGGGTTTTAGGCCGACAAACAGCACATAATCCGCAAAGCACTGATTACCCGATTCTTCttt > 2:2211141/1‑150 (MQ=255) aTCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGt > 1:2204542/1‑150 (MQ=255) tCGAAACATTTACTGTAGCGTTACGACTCATTGAGCCTTGCGGGAACGTCGATATTGTTACTTTTCGCCTCTACCAACGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCATAGACCTGATTACCCGTTTCATCTTTTCCGTTc < 2:3445108/150‑1 (MQ=255) tCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTc < 2:157545/150‑1 (MQ=255) tCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTc < 1:3281418/150‑1 (MQ=255) cGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCg > 2:4117706/1‑150 (MQ=255) aTTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCAtt < 2:2678915/150‑1 (MQ=255) tttACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTc > 1:1271645/1‑150 (MQ=255) tttACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTc < 1:1134095/150‑1 (MQ=255) ttACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCg > 2:4437164/1‑150 (MQ=255) aCTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGc > 1:3852296/1‑150 (MQ=255) aCTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGc > 1:859866/1‑150 (MQ=255) tGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCaa > 1:1697724/1‑150 (MQ=255) gTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAAt < 2:2134343/150‑1 (MQ=255) gTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAAt < 1:1381164/150‑1 (MQ=255) aGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATgg < 1:2963928/150‑1 (MQ=255) aGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATgg < 1:1990893/150‑1 (MQ=255) aTACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCttt > 1:4165197/1‑150 (MQ=255) aCGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTAt > 2:3349124/1‑150 (MQ=255) aCGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTAt < 2:2626822/150‑1 (MQ=255) gACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTg > 2:4340321/1‑150 (MQ=255) cTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGAc < 1:3552269/150‑1 (MQ=255) cTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGAc < 1:4500318/150‑1 (MQ=255) cATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGc > 2:2229480/1‑150 (MQ=255) aGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGt > 1:3136056/1‑150 (MQ=255) aGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGt > 1:2652052/1‑150 (MQ=255) gCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGtt < 2:370665/150‑1 (MQ=255) cTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTcc < 2:4037502/150‑1 (MQ=255) tGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCg > 1:3278063/1‑150 (MQ=255) cGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGAc < 1:2521338/150‑1 (MQ=255) ggAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGt > 2:1028999/1‑150 (MQ=255) gAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTg > 2:3848525/1‑150 (MQ=255) gAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTg > 1:702647/1‑150 (MQ=255) gAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTg > 1:1898472/1‑150 (MQ=255) aaCGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTgc < 1:2392407/150‑1 (MQ=255) aaCGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTgc < 1:1052060/150‑1 (MQ=255) aCGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTgcg > 2:2403868/1‑150 (MQ=255) cGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCAACTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTGCGCCtt > 1:875853/1‑150 (MQ=255) gATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTGCGCCttt < 1:339343/150‑1 (MQ=255) atatTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTGCGCCTTTg < 2:636390/150‑1 (MQ=255) cGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTGCGCCTTTGGAGAAgcgc > 2:1228905/1‑150 (MQ=255) cGTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTGCGCCTTTGGAGAAgcgc > 1:3965682/1‑150 (MQ=255) gTTTAGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTGCGCCTTTGGAGAAGCGCa < 2:3626582/150‑1 (MQ=255) | CAGCTGGTTTCATACTCTGGCACTGCTTCATGCACTTCATCCGGTGAGTAGTGCTCAAGCAAGGTTTCCCGCAGGAAGCCATTATCGAAACATTTACTGTAGCGATACGACTCATTGAGCCTGGCGGGAACGTCGATATTGTTACGTTTCGCCTCTACCACCGCGATGGGTTTGAGGCCGACAAACAGCACATAATCCGCAAAGCCCTGATTACCCGTTTCATCTTTTCCGGTCGGCCATTCGGCAATGGCTTTATTGACGCCGGGTTCCGGACGTGCGCCTTTGGAGAAGCGCAGGGT > CP009273/4575491‑4575789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |