| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,599,673 | C→A | 11.1% | S18* (TCG→TAG) | hyfE → | hydrogenase 4, membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,599,673 | 0 | C | A | 11.1% | 944.2 / 59.0 | 260 | S18* (TCG→TAG) | hyfE | hydrogenase 4, membrane subunit |
| Reads supporting (aligned to +/- strand): ref base C (109/122); new base A (17/12); total (126/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 265 total aligned reads displayed.
TGCCAGGATCAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCAGCGCCTTTATC > CP009273/2599524‑2599818 | tGCCAGGATCAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATc < 2:2668937/150‑1 (MQ=255)tGCCAGGATCAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATc < 2:2493173/150‑1 (MQ=255) cAGGATCAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCt < 2:4290809/150‑1 (MQ=255) aGGATCAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTg < 2:886493/150‑1 (MQ=255) ggATCAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGt < 1:1502960/150‑1 (MQ=255) tCAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTtg < 1:1295000/150‑1 (MQ=255) cAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTtgt > 2:4112281/1‑150 (MQ=255) ccTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGc < 2:4376089/150‑1 (MQ=255) tGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGt > 2:121240/1‑150 (MQ=255) tgtTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGTTTCTATGCTCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCaa < 1:4577585/150‑1 (MQ=255) gtTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCaaa < 1:397376/150‑1 (MQ=255) gtTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCaaa > 1:3014818/1‑150 (MQ=255) ttGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCaaaa < 1:2855741/150‑1 (MQ=255) aTTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCt > 1:935014/1‑150 (MQ=255) aTTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCt > 1:3292145/1‑150 (MQ=255) tGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTACGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCt > 2:4056372/1‑150 (MQ=255) tgtgATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCa < 2:1931445/150‑1 (MQ=255) tgtgATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCa < 1:2533476/150‑1 (MQ=255) aTGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCg > 1:2694370/1‑150 (MQ=255) tCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAt > 1:3875561/1‑150 (MQ=255) cGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAtt < 2:1128177/150‑1 (MQ=255) gCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAttt > 1:2723040/1‑150 (MQ=255) gCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAttt < 1:4494516/150‑1 (MQ=255) cTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAtttt < 2:181449/150‑1 (MQ=255) cTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGAtttt > 2:4477154/1‑150 (MQ=255) tGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTa > 2:3767879/1‑150 (MQ=255) ttCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGcc > 1:996608/1‑150 (MQ=255) ttCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGcc > 2:2362532/1‑150 (MQ=255) tCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCt > 1:2185573/1‑150 (MQ=255) aGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGcc > 1:1798573/1‑150 (MQ=255) aaTCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCa < 1:2637241/150‑1 (MQ=255) tCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCAct < 1:3147175/150‑1 (MQ=255) cgccgcGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCActg < 1:2779540/150‑1 (MQ=255) cgccgcGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCActg > 2:3841671/1‑150 (MQ=255) cgcgACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCActggtg < 2:2538765/150‑1 (MQ=255) cgACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCActggtgct < 2:1447480/150‑1 (MQ=255) gACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGTCATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCActggtgctg < 1:2038222/150‑1 (MQ=255) aCCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCActggtgctgg < 1:2348284/150‑1 (MQ=255) cTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCActggtgctggtg > 2:3905593/1‑150 (MQ=255) cTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCActggtgctggtg < 2:1008271/150‑1 (MQ=255) tGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGgtgt < 1:3287039/150‑1 (MQ=255) ggTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTc < 1:1231589/150‑1 (MQ=255) tGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGTTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTAt > 1:3500333/1‑150 (MQ=255) gCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTAtt < 1:1152851/150‑1 (MQ=255) aGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTAtttt < 2:312050/150‑1 (MQ=255) aGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTAtttt > 2:2495775/1‑150 (MQ=255) tAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCg < 2:2950581/150‑1 (MQ=255) tAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCg < 1:728608/150‑1 (MQ=255) aaGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGc > 2:1961785/1‑150 (MQ=255) aGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGcc > 2:3812815/1‑150 (MQ=255) ggAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCa < 1:1365809/150‑1 (MQ=255) ggAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCa < 1:3042714/150‑1 (MQ=255) agaTGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCAct < 1:105320/150‑1 (MQ=255) tgatgaATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCActctc > 2:2980943/1‑150 (MQ=255) tgatgaATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCActctc < 1:3765770/150‑1 (MQ=255) tgatgaATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCActctc < 2:3728352/150‑1 (MQ=255) tgatgaATGACCGGTTCGATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCActctc < 1:1931101/150‑1 (MQ=255) gatgaATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCActctct < 1:3356457/150‑1 (MQ=255) atgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACtctctc < 2:1971131/150‑1 (MQ=255) atgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACtctctc < 2:3244569/150‑1 (MQ=255) atgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACtctctc < 2:835387/150‑1 (MQ=255) atgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACtctctc > 2:2450468/1‑150 (MQ=255) atgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACtctctc < 2:3517692/150‑1 (MQ=255) atgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACtctctc < 2:4037987/150‑1 (MQ=255) atgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACtctctc > 1:3196558/1‑150 (MQ=255) atgaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACtctctc > 2:91305/1‑150 (MQ=255) gaatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGt > 1:2308589/1‑150 (MQ=255) aatgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTg < 2:1495169/150‑1 (MQ=255) atgaCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGc < 1:4308138/150‑1 (MQ=255) aCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTg > 2:4431410/1‑150 (MQ=255) aCCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTg < 1:1347133/150‑1 (MQ=255) cGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGtt > 1:4393586/1‑150 (MQ=255) cGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGtt > 2:534472/1‑150 (MQ=255) cGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGATGGTGTCTATTTTCGCCACTCTCTCTGGCCTGtt > 2:1076462/1‑150 (MQ=255) gTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTcg < 1:1617119/150‑1 (MQ=255) gTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTcg < 2:363652/150‑1 (MQ=255) tCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTATTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTcgcc > 2:940533/1‑150 (MQ=255) tCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTcgcc < 1:678434/150‑1 (MQ=255) cTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTcgccg > 2:27804/1‑150 (MQ=255) tGATCGTAAATAATCTGGCGGGACTGAAGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGACATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGACTATTTTCGCAACTCTCTCGTGCCTGTTCGCCGCag > 1:812520/1‑150 (MQ=255) tCGTAAATAATCTGTCGGGACTGATGATGCTGACATCGCAGTTTGTGATAATCGTCAAAAGCTATAGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGACACTCTCTCGTGCCTGTTCGCCGCAGAGc > 2:1644744/1‑150 (MQ=255) tCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGc < 2:637514/150‑1 (MQ=255) cGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCa > 2:2214066/1‑150 (MQ=255) cGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCa < 2:1387871/150‑1 (MQ=255) taatCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAActgct > 2:424404/1‑150 (MQ=255) tCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGAt > 1:819913/1‑150 (MQ=255) tCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGAt < 2:3188735/150‑1 (MQ=255) cTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATc < 2:549591/150‑1 (MQ=255) ggCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTg > 2:2848193/1‑150 (MQ=255) cGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGt < 1:121240/150‑1 (MQ=255) ggACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTcc < 1:3571848/150‑1 (MQ=255) gACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCg < 1:4056372/150‑1 (MQ=255) aCTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGc > 1:525364/1‑150 (MQ=255) tgatgaTGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCa > 2:2141680/1‑150 (MQ=255) tgatgaTGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCa < 1:2459046/150‑1 (MQ=255) tgatgCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCAgcg > 2:1670500/1‑150 (MQ=255) gCTGACATAGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCAGCGCCtt > 2:2585280/1‑150 (MQ=255) cTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCAGCGCCttt < 1:1961804/150‑1 (MQ=255) cTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCAGCGCCttt < 1:1961766/150‑1 (MQ=255) aCATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCAGCGCCTTTATc > 1:4400121/1‑150 (MQ=255) | TGCCAGGATCAATGCGCCTGGTGTTGATTGTACTGATTGTGATGTCGCTGATTTCCAGCGTAATCGCCGCGACCTGGTTGCAGTAAGGAGATGATGAATGACCGGTTCTATGATCGTAAATAATCTGGCGGGACTGATGATGCTGACATCGCTGTTTGTGATTAGCGTCAAAAGCTATCGCCTGTCATGCGGATTTTACGCCTGCCAGTCACTGGTGCTGGTGTCTATTTTCGCCACTCTCTCGTGCCTGTTCGCCGCAGAGCAACTGCTGATCTGGTCCGCCAGCGCCTTTATC > CP009273/2599524‑2599818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |