| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,719,168 | A→T | 5.2% | intergenic (‑63/+260) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,719,168 | 0 | A | T | 5.2% | 899.1 / 6.3 | 293 | intergenic (‑63/+260) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| Reads supporting (aligned to +/- strand): ref base A (90/185); new base T (16/2); total (106/187) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.92e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 299 total aligned reads displayed.
TGAAGAGGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGT > CP009273/2719019‑2719317 | tGAAGAGGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTa < 2:591240/150‑1 (MQ=255) gagGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAgg > 2:3996272/1‑150 (MQ=255) agGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTATTTTTTTTGTAAAggg > 1:13017/1‑149 (MQ=255) cccccACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTATTTTTTTTGTAAAGGAAat > 2:3693050/1‑150 (MQ=255) cccccACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGGTTGTTTATTTTTTTTGTAAAGGGAat > 2:423647/1‑150 (MQ=255) cccACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAat‑at < 1:2238897/150‑1 (MQ=255) cccACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAat‑at < 1:2181476/150‑1 (MQ=255) cccACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAat‑at < 1:1597779/150‑1 (MQ=255) cccACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAat‑at < 1:4239380/150‑1 (MQ=255) ccACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAt‑att < 1:3708908/150‑1 (MQ=255) cacaATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAt‑atta < 1:3592182/150‑1 (MQ=255) cacaATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTATTTTTTTTTTAAAGGTAAt‑atta > 1:675690/1‑150 (MQ=255) acaATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAt‑attat < 1:2008592/150‑1 (MQ=255) caATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAATGAAAT‑ATtata > 2:4319523/1‑150 (MQ=255) aaTCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATTCCATTATGTCTCCTGCCGTAATCCGATGATTATGTCGGTCGCGTTTGTTTTTTTTTTTTTTAAATGAAAA‑AAtataa > 1:91692/1‑149 (MQ=255) aaTCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATAc < 1:2446462/150‑1 (MQ=255) tCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACAt < 2:3561446/150‑1 (MQ=255) cccAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATttg < 1:4620185/150‑1 (MQ=255) cccAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACAtttt > 2:1819678/1‑149 (MQ=255) cAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATttgtt < 1:368405/150‑1 (MQ=255) cAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATttgtt < 2:3051733/150‑1 (MQ=255) cAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATttgtt < 2:2832417/150‑1 (MQ=255) cAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATttgtt < 2:4373647/150‑1 (MQ=255) aaTGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGc < 1:26983/150‑1 (MQ=255) aTGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCa < 2:1733111/150‑1 (MQ=255) aTGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTGTTGTTTTTTTTTTTTTTTAATGAAAT‑ATTATACAtttttttga > 1:3541732/1‑147 (MQ=255) cggcgACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCatat < 1:2867079/150‑1 (MQ=255) ggcgACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGGAAT‑ATTATACATTTGTTGCATATc < 1:1452679/150‑1 (MQ=255) gcgACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCa < 1:2044284/150‑1 (MQ=255) cgacgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTTTTTTTTTTGTAAATGAAAT‑ATTATAAATTTGTTTCATATAAt > 1:2367043/1‑150 (MQ=255) gacgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCAtt < 1:2467959/150‑1 (MQ=255) gacgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCAtt < 1:335858/150‑1 (MQ=255) cgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTAt < 2:1888297/150‑1 (MQ=255) gaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATg > 1:3436085/1‑150 (MQ=255) gTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCa < 2:3307176/150‑1 (MQ=255) tATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAATGGAAAT‑ATTATACATTTGTTGCATATCATTATGCaa < 1:1344722/150‑1 (MQ=255) tATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCaa < 2:3153565/150‑1 (MQ=255) aTCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCaaa > 2:3818125/1‑149 (MQ=255) cACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCt < 1:4276178/150‑1 (MQ=255) tactTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTaa < 2:2701345/150‑1 (MQ=255) actTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTTTAAAGGAAAT‑ATTATACATTTGTTTCATATAATTATGCAACCATaaa > 1:616958/1‑149 (MQ=255) actTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGGTTGTTTATTTTTTTTTTTAATGAAAT‑AATATAAAATTTTTTCATATAAATATGAAAACATaaa > 1:1660723/1‑149 (MQ=255) ctTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAAcc < 2:477285/150‑1 (MQ=255) gTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATg < 1:4261146/150‑1 (MQ=255) tCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGa < 2:4533675/150‑1 (MQ=255) tCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGa < 2:4089939/150‑1 (MQ=255) tCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGa < 2:2571532/150‑1 (MQ=255) gTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAAtt < 1:2077577/150‑1 (MQ=255) tttGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAAttt < 2:2167250/150‑1 (MQ=255) atGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATttagtt < 2:4616321/149‑1 (MQ=255) tGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATttagtta < 2:2375318/150‑1 (MQ=255) tCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGc < 2:1238268/150‑1 (MQ=255) gCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGGGTGTTTATTTTTTTTGGTAAGGAAAA‑ATAATAAAATTGTTTGATATAATTATGCAAACATAAACAAGAATTTAGTTAGCAgg > 1:3952605/1‑150 (MQ=255) cGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTGTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATAAATTTGTTTGATATAATTATTCAACCATAAACAAGAATTTAGTTAGCAGGaa > 1:977997/1‑150 (MQ=255) gTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGGAAG‑ATTATACATTTGTTTCATATAATTATTCAACCTTAAACATGTATTTATTTAGCAGGaaa > 2:1960421/1‑150 (MQ=255) tACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAAt < 1:2635402/150‑1 (MQ=255) aCAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTATTTTTTTTGTAAAGGGAATAATTAAAAATTTTTTG‑AAAAAATTATTCAACCATAAACAAGAATATAGTTATCAAGaaaaag > 1:3224728/1‑148 (MQ=255) gTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGtt < 1:23427/150‑1 (MQ=255) gTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGtt < 2:2368177/150‑1 (MQ=255) gTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGtt < 1:1864076/150‑1 (MQ=255) aCTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTAt < 1:3898535/150‑1 (MQ=255) tttCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATAAATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTg < 1:1007320/150‑1 (MQ=255) tCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTgag < 2:3433750/150‑1 (MQ=255) cAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTgagg < 2:1339452/150‑1 (MQ=255) cAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTgagg < 2:2111042/150‑1 (MQ=255) aGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTgagga < 1:875880/150‑1 (MQ=255) aGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTATTTTTTTTGTAAATGAAAT‑ATTATAAATTTTTTGCATATCATTATTCAACCATAACCATGAAATTAATTAGCAGGAAAATGGTTATTgagga > 1:1284287/1‑150 (MQ=255) catgccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTTTTTATTTTTTTTGTAAAGTTAAT‑ATTATACAATTGTTGCATATAATTATTAAACCATAACCATGAATTTATATAGCAGGAAAATGGTTATTTAGGAGca > 2:1307437/1‑149 (MQ=255) atgccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCtt < 1:325838/150‑1 (MQ=255) tgccatTATGTCTCCTGCCATAATCCGATGCTTTTGTCGGTCGCGTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTTTTGCATATCATTATGCAACCTTAAACATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTa > 1:3775714/1‑150 (MQ=255) tATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATa < 1:1714707/150‑1 (MQ=255) aTGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTTTTTTTTTTTTAAAGGTAAT‑ATTTTAAATTTTTTGAATATAATTATTCAACCCTAAACAAGAAATTATTTTGAAGGAAAATGGTTTTTGTGGAGGTTAAGGGTaa > 1:2094826/1‑150 (MQ=255) tGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTGTACATTTGTTGCATATAATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATaaa > 2:1913043/1‑150 (MQ=255) gTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAAt < 2:1631106/150‑1 (MQ=255) tGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTgg < 2:1522346/150‑1 (MQ=255) gCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTTTTGCATATCATTATTCAACCATAAACATGAATTTAGTTAGCAGGAAAATGGATATTGAGGAGATTAAAGAAAAATTTCTGGt > 2:2282352/1‑150 (MQ=255) gCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGt < 1:1077251/150‑1 (MQ=255) gCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGt < 1:3748997/150‑1 (MQ=255) aaTCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAATGAAAT‑ATTATACAATTGTTTCAAATAATTATTCAACCATAACCATGAATTTAGTTAGCAGGAAAAAGGTTATTGAGGAGCTTAAGGATAAATTTATGGTAagga > 1:1540947/1‑150 (MQ=255) aaTCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTATGGTAagga > 2:4174793/1‑150 (MQ=255) gCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGt < 2:3524881/150‑1 (MQ=255) ttttGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTAt < 1:4388091/150‑1 (MQ=255) ttttGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTAt < 1:2986125/150‑1 (MQ=255) tttGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATg < 1:1236579/150‑1 (MQ=255) cgCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGc > 2:1791284/1‑150 (MQ=255) cgCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGc > 2:3261896/1‑150 (MQ=255) gCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCATCCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCa < 2:659739/150‑1 (MQ=255) aatattGTTTATTTTTTTTGTAAAGGAAAT‑ATTAAACATTAGTTGCATATCAGTAAGCAAACTTAACCATGAAATTAGTTAGCAGGAAAATGGTGATTGAGGAGCTTTAGGATAAATTTAGTGACAGGAGGACACGAATGGAAGTGGGCa > 2:366036/5‑150 (MQ=255) cTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCaa < 1:1785396/150‑1 (MQ=255) cTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCaa > 1:1091911/1‑150 (MQ=255) tttGTTTATTTTTTTTTTAAAGGAAAT‑ATTATACATTTTTTGCATATCATTATGCAACCTTAACCATTAATTTATTTAGCAGGAAAAATGTTATAGAGGAGATTAAGGATAAATTTATGGTAATGAGGACACTTATTGAAGTTGGCaatt > 1:2257105/1‑148 (MQ=255) tttATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTggg > 1:2212811/1‑150 (MQ=255) tttATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTggg < 2:1669820/150‑1 (MQ=255) tttttttGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGc < 2:2773702/150‑1 (MQ=255) ttttttGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGcc < 1:1961201/150‑1 (MQ=255) tttttGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCg < 2:1148931/150‑1 (MQ=255) ttttGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGt < 1:3693050/150‑1 (MQ=255) ttGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTAt < 2:2892594/150‑1 (MQ=255) tAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCg > 1:3988876/1‑150 (MQ=255) tAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCg > 1:4215101/1‑150 (MQ=255) | TGAAGAGGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTGTAAAGGAAAT‑ATTATACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGT > CP009273/2719019‑2719317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |