| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,439,422 | G→T | 7.1% | I26I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,439,422 | 0 | G | T | 7.1% | 607.6 / 2.1 | 247 | I26I (ATC→ATA) | rplF | 50S ribosomal subunit protein L6 |
| Reads supporting (aligned to +/- strand): ref base G (114/102); new base T (17/13); total (131/116) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 253 total aligned reads displayed.
CCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAG > CP009273/3439274‑3439570 | ccATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTg < 2:4215077/149‑1 (MQ=255) cATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGa > 2:4037477/1‑149 (MQ=255) ttCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGtaat > 1:898247/1‑149 (MQ=255) agcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAc > 1:2437318/1‑149 (MQ=255) agcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAATAAc > 1:1961233/1‑149 (MQ=255) cagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCt < 2:4656626/149‑1 (MQ=255) cagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCt < 2:4656598/149‑1 (MQ=255) agGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAATAAACTg > 2:2176433/1‑149 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGa < 1:3408224/149‑1 (MQ=255) gCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTAGCCGTTTTTACAGTTGATCGTAATAACCAGaac > 1:1042426/1‑147 (MQ=255) aCGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGt < 2:2320117/149‑1 (MQ=255) aCGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGt < 2:1591681/149‑1 (MQ=255) cgcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGtt < 2:1279999/149‑1 (MQ=255) ggTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATAGTTATAACCAGACCGGTGAttt > 1:1723252/1‑149 (MQ=255) gTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGAtttt > 2:4492365/1‑149 (MQ=255) gCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTc < 2:2113829/149‑1 (MQ=255) ccTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCa > 2:3583118/1‑149 (MQ=255) cTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCaa > 2:4389119/1‑149 (MQ=255) tgtgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAAc < 2:3230584/149‑1 (MQ=255) tgtgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAAc < 1:3597282/149‑1 (MQ=255) gtgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACg > 2:1845132/1‑149 (MQ=255) gCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTTAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTTTCGTAATAACCTGACCGTTGTTTTTTAAGTCAACGcc > 1:2299524/1‑149 (MQ=255) gCCCAACCGTCTGCGTAACCATCAAGCGGACCGAAGGTCAGGGTATTATATTCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTTCCTTTGTTCGTAATAACCTGACCGTTGATTTTTTCGTCAACGcc < 2:2024214/149‑1 (MQ=255) ccAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGGTGATTTTTACGTCAACGCCgg > 2:2965796/1‑149 (MQ=255) aCCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAg > 2:2914760/1‑149 (MQ=255) aCCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGTCAAAGCCGGCAg > 1:2537586/1‑149 (MQ=255) cGTCTGCGTAACCATCACGGGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGa < 1:1679147/149‑1 (MQ=255) cGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGa < 2:1366417/149‑1 (MQ=255) tCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaac < 1:4706890/149‑1 (MQ=255) tCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCGTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaac > 1:3937071/1‑149 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaacaa < 1:668810/149‑1 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaacaa < 1:1961905/149‑1 (MQ=255) gCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaacaac < 1:4467992/149‑1 (MQ=255) tAACCATCACGCGGACCGATGGTATGTGTATTATCTGATTTTTTAACTTCAACAGCATCGTTGAGTGTACGAGTCAGCTCGCCTTTTTTACATTTGATCGTAATAACCTGACCTTTTTTTTTTACGTCAACGCCGGCAGGAACAACGAc < 1:3274526/149‑1 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGAc < 2:2567405/149‑1 (MQ=255) aaCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAAAGCCGGCAGGAACAACGAcc > 2:4706100/1‑149 (MQ=255) aaCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGAcc > 2:4551349/1‑149 (MQ=255) ccATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCgg > 2:1186179/1‑149 (MQ=255) cgcgGACCTACGGTATGTGTTTTATCTTAATTTTTAACTTCAACAGCATCTGTTAGTGTACGAGACAGCTCGCCTTTTTTACCTTTGATCTTAATAACCTGACCTTTGATTTTTAGGTCAACGCCGGCAGGAACAACGACCGGTGCttt < 1:1824095/149‑1 (MQ=255) cgGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAg < 2:703974/149‑1 (MQ=255) gACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCGTTAGCa > 2:406292/1‑149 (MQ=255) gatggTCAGGGTATTATCTGAATTTTTAACTACAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATACCCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAacac < 1:787450/146‑1 (MQ=255) gAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTTTCGTAATAAACAGACCGTTTATTTTTAAGTCAACGCCGGCCGGAAAAACCACCCGTGCGTTAGcaccac > 1:1210526/1‑149 (MQ=255) gTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACgaga < 2:1468400/149‑1 (MQ=255) tCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGAc > 2:4615987/1‑149 (MQ=255) tCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAAAAACCAGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCCGTGCTTTAGCAACACGAGAc > 1:4232237/1‑149 (MQ=255) ctggtttttatCTGAATTTTTAACTACAACAGCATCGTTGAGAGTACGCGTCAGCTCGCCGTTTTTACTTTTTATCTTAATACCCTGACCTTTTATTTTTCCGTAAACGCCGGCCGGAACAACGACCGGTGCTTTAGCAACACGAGACa < 1:4534647/142‑1 (MQ=255) aGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGTTTTTTACGTCAACGCCGGCAGGAACAAAGACCGGTGCTTTAGCAACACGAGACAt > 2:4599582/1‑149 (MQ=255) ggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAttt > 2:2393965/1‑149 (MQ=255) ggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTAAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAttt > 2:627054/1‑149 (MQ=255) ggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCAGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAatt > 1:1895799/1‑149 (MQ=255) gTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATAGTAATAAACAGACCGTTGATTTTTAAGTAAAAGCCGGAAGGAACAACGAACCGTGCTTTTTCAACACGAGAAAattt > 1:3042333/1‑149 (MQ=255) attatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCGTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAtttttt > 1:3979187/1‑149 (MQ=255) tatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcc > 2:3748139/1‑149 (MQ=255) atCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcct > 2:1417728/1‑149 (MQ=255) cttaaTGTTTAACTTAAAAAGAATCTTTGTGTGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTTATTTTTACGTCAACGCCGGAAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctcc < 1:3156292/145‑1 (MQ=255) tGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCg > 2:3553600/1‑149 (MQ=255) cATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGAt < 2:1700734/149‑1 (MQ=255) aTGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATAGTAATAAACTGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACCACCCGTGCTTTAGCAACACGAGACATTTTTTACTCCgctg > 1:3688459/1‑146 (MQ=255) tGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCTTTGATTTTTCCGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTa < 1:4285761/149‑1 (MQ=255) tGTTTAAATTCAACAGCATGTTTGAGAGTACGATTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCTGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTa < 1:4285772/149‑1 (MQ=255) tAAATTAAACAGCATCGTTTTGATTACGAGTCAGCTCGCGTTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACTACAACGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCt < 1:56589/149‑1 (MQ=255) aaCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCATTGATCGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCCGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAATTTTTCCTCCGAGTAGGCTa > 1:1451701/1‑149 (MQ=255) aCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAAACAGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACCACCGGTGCTTTAGCAAAACGAGACATTTTTTCCGCCGATTAGGCTaa > 1:689558/1‑148 (MQ=255) acAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTa < 2:1329751/148‑1 (MQ=255) aaCAGCATCGTTGAGTGTACGTGACAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTCCGTCAACGCCGGCTGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGc < 1:158834/149‑1 (MQ=255) aaCAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTTACCGTTGATTTTTACGTAAACGCCGGCAGGACAAACGAACGGTGCTTTATCAACACGAGACAATTTTTCCTCCGAGTAGGCTAAGTAGc > 2:1647382/1‑149 (MQ=255) aCAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTCCGTAGCa > 2:2816236/1‑149 (MQ=255) cAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAATTTTTCCTCCGATGAGGCAACGTAGCAg > 2:111136/1‑149 (MQ=255) aGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGACCAACGACCGGTGCTTTCGCCACACGAGACATTTTTTCCTCCGATGAGGCGACGTAGCAGa > 2:1746784/1‑149 (MQ=255) aGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAACAGACCGTTGATTTTTACGTCAACGCCCGCAGGAAAAACGACCGGTGCGTTAGCAACACGCGACATTTTTTCCTCCGATTAGGCGACGTAGCAGa > 1:1068673/1‑149 (MQ=255) gCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGAt < 2:2246268/149‑1 (MQ=255) gCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGAt < 2:305793/149‑1 (MQ=255) aTCGTTGAGAGTACGAGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACGGTTGATTTTTACGTCAACGCGGCCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATaa < 1:1379088/149‑1 (MQ=255) tCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAAAAAACAGACCCTTGATTTTTACGTCAACCCCCGCAGGAACAACCACCGGTGCTTTAGCAACACCCGACAATTTTTACACCGATTAGGCTACGTATCAGATaaa > 1:2661925/1‑148 (MQ=255) ttGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATAGTAATAAACTGACCGTTTATTTTTAAGTCAAAGCCGGCAGGAACAAAGACCGGTGCTTTATCAAAAAGAGACATTTTTTGGTCAGATTATGCTACGTAGCAGATAAttta > 1:2687503/1‑148 (MQ=255) gTACGAGTCAGCTCGCCTTTTTTACCTTTGATCGAAATAACCTGACCTTTTATTTTTACGTCACCGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGccacc < 1:1278096/149‑1 (MQ=255) gTACGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCAGACCGTTTATTTTTAAGTCAACGCCCGCCGGAACAACCACCCGTGCTTTAGCAACACCAGACATTTTTTACACCGAGTAGGCTACGTAGCAGATAATTTCGccacc > 1:174433/1‑149 (MQ=255) tACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGccacca < 1:3495623/149‑1 (MQ=255) aCGAGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCaa < 1:726041/149‑1 (MQ=255) aCGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAATTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGccaccca > 2:1302692/1‑147 (MQ=255) aCGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTAAGGAGCAGAAAATTTAGCCACCaa > 2:1903265/1‑149 (MQ=255) gAGTCAGCTCGCCTTTTTTATCTTTGATCGTAATACCCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGa < 1:3991928/149‑1 (MQ=255) gTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCTGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAcc < 2:2840933/149‑1 (MQ=255) gTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGCCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAcc < 2:511895/149‑1 (MQ=255) gatggCCTTTTTTACCTTTTATCTTAATAACATGACCGTTTTTTTTAACTTCAACGCCGGAAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 1:3302155/145‑1 (MQ=255) gCTCGCCGTTTTTACCTTTGTTCGTAATAACGTGACGGTTGATTTTTCCGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 1:3290992/149‑1 (MQ=255) gCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 2:3237576/149‑1 (MQ=255) gCTCGCCGTTTTTACATTTGATCTTAATAACCTGACCGTTTATTTTTACGTCAACGCCGGCAGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 1:4478510/149‑1 (MQ=255) cTCGCAGTTTTTACATTTTATGTTAATAACCTGACGTTTGTTTTTTCCGTCACCGCCGGCTGTAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCt < 1:2033262/149‑1 (MQ=255) tCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTg < 2:789270/149‑1 (MQ=255) tCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTg < 1:3440783/149‑1 (MQ=255) gCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTCCGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgc > 2:192217/1‑149 (MQ=255) cGTTTTTACCTTTTATCGTAATAACCTGACCGTTGTTTTTTACGTCACCGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgc < 1:86011/149‑1 (MQ=255) gTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcg > 1:2260570/1‑149 (MQ=255) tttttACCTTTGATCTTAATAACCTTACCTTTTATTTTTACGTCACCGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcgc < 1:1608286/149‑1 (MQ=255) tttttACCTTTGATCGTAATAACCTGACCGTTTTTTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcgc < 1:1784943/149‑1 (MQ=255) ttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCt > 2:2204191/1‑149 (MQ=255) ccTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACg > 2:2914688/1‑149 (MQ=255) ttGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATc < 1:3829699/149‑1 (MQ=255) | CCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAG > CP009273/3439274‑3439570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |