| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,439,800 | T→A | 19.2% | A35A (GCA→GCT) | rpsH ← | 30S ribosomal subunit protein S8 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,439,800 | 0 | T | A | 19.2% | 727.7 / 161.5 | 292 | A35A (GCA→GCT) | rpsH | 30S ribosomal subunit protein S8 |
| Reads supporting (aligned to +/- strand): ref base T (138/98); new base A (28/28); total (166/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
Only 100 of 299 total aligned reads displayed.
TGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACAATTACCAGCTA > CP009273/3439652‑3439947 | tGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGAtt > 1:2750684/1‑149 (MQ=255) aGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCAc > 1:4462572/1‑149 (MQ=255) gACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTAAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACTTTGGCGATTGCCACt > 2:1272926/1‑149 (MQ=255) ccTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCATCTTCCTTCAGCACGATGGCGATTGCCACttt > 1:1232970/1‑149 (MQ=255) cTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTc < 2:3183125/149‑1 (MQ=255) gggCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAg > 2:2844679/1‑149 (MQ=255) gcggcTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCt < 2:3567450/149‑1 (MQ=255) gcggcTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCt < 2:1080249/149‑1 (MQ=255) gcTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCAAGTTCAGGCTTGGTGTCGCC‑TCAACTTTAAAATCTTCAATAAAAACTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTgga > 1:2855183/1‑149 (MQ=255) gACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTggagg > 1:2368609/1‑149 (MQ=255) acacGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTggagga < 1:30676/149‑1 (MQ=255) cacGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGaa < 2:4707791/149‑1 (MQ=255) acGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAg > 1:4394250/1‑149 (MQ=255) cGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGAGTGCCACTTTCAGCTTGGAGGAAgg > 2:4136511/1‑149 (MQ=255) gAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATg > 2:1575038/1‑149 (MQ=255) gAATGATTTCTACAACAGCTTTGCCCTGTAAATACTTAAGAGTAAGTTCCAGTTCAGTCTTGGTGTCGCCTTCAACATTAAAATATTCAAAAAAACCTACTTCATTCAGAACGTTTGCGATTGACACTTTCAGATTGGAGGAATGCATg > 1:4138240/1‑149 (MQ=255) aaTGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGTAGGAAGGCATgg > 1:4329234/1‑149 (MQ=255) aTGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGt > 2:2408801/1‑149 (MQ=255) ttCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCg > 1:678289/1‑149 (MQ=255) tCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGc > 1:168545/1‑149 (MQ=255) tCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGc < 1:2667276/149‑1 (MQ=255) caacaGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCt < 2:2000767/149‑1 (MQ=255) caGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTg < 1:2914070/149‑1 (MQ=255) caGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTg > 1:2106351/1‑149 (MQ=255) caGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTg > 2:4231085/1‑149 (MQ=255) gCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGtt > 1:2171000/1‑149 (MQ=255) ttGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTcgc < 2:2164005/149‑1 (MQ=255) ccTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGcc < 1:361074/149‑1 (MQ=255) cTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCt > 1:3154084/1‑149 (MQ=255) tGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTg > 1:895852/1‑149 (MQ=255) tGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTg > 2:3701374/1‑149 (MQ=255) ggAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGa > 1:3775290/1‑149 (MQ=255) ggAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGa < 2:811603/149‑1 (MQ=255) gAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGAc > 2:3214072/1‑149 (MQ=255) aaTACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCg > 1:1052405/1‑149 (MQ=255) aaTACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCg > 2:2918703/1‑149 (MQ=255) aaTACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCg > 2:746363/1‑149 (MQ=255) aTACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGt < 2:1770334/149‑1 (MQ=255) aTACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGt < 2:4160086/149‑1 (MQ=255) aTACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGt < 2:275191/149‑1 (MQ=255) tACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGtt < 1:3701769/149‑1 (MQ=255) tACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGtt > 2:3958511/1‑149 (MQ=255) aCTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTa < 1:184727/149‑1 (MQ=255) ttCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTGTGTTCGCGGCCTGACCGTTACg > 2:2497592/1‑149 (MQ=255) cAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGa > 2:1519502/1‑149 (MQ=255) aGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGt < 1:793257/149‑1 (MQ=255) aGTTCCAGTTCAGGCTTGGTGTAGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGAGATTTCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGt > 2:3413936/1‑149 (MQ=255) gTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTc < 1:4576612/149‑1 (MQ=255) gTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTc > 1:1338339/1‑149 (MQ=255) ccAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGc > 2:3536465/1‑149 (MQ=255) ccAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGc > 1:488229/1‑149 (MQ=255) ccAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGc > 2:4478607/1‑149 (MQ=255) aGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCat > 1:310844/1‑149 (MQ=255) tCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATc > 1:1151499/1‑149 (MQ=255) cAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATcc < 2:1862038/149‑1 (MQ=255) ggCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCcgc > 1:2309643/1‑149 (MQ=255) ggCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCcgc > 2:4768790/1‑149 (MQ=255) ggTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCg < 1:4204355/149‑1 (MQ=255) ggTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCg > 1:4674037/1‑149 (MQ=255) ccTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTg > 1:2611004/1‑149 (MQ=255) ccTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTg > 2:1024106/1‑149 (MQ=255) ccTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTg > 2:2888896/1‑149 (MQ=255) tCAACTTTAAAATCTTCAATAAACCCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCAt < 2:3123351/149‑1 (MQ=255) aaCTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGc < 2:1373139/149‑1 (MQ=255) aaCTTTAAAATCTTCAATAAAACCTTCTGCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGc < 2:3824213/149‑1 (MQ=255) aCTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATAGCCACATTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCt > 1:788948/1‑149 (MQ=255) ttAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCAt > 1:3920807/1‑149 (MQ=255) aaaaTCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCt > 2:3336711/1‑149 (MQ=255) aTCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTc > 2:4381184/1‑149 (MQ=255) aTCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTc > 1:747895/1‑149 (MQ=255) aTCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTc > 1:3479870/1‑149 (MQ=255) cTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCtt < 2:62227/149‑1 (MQ=255) cAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTAc < 1:3553261/149‑1 (MQ=255) aaTAAAACCTTCTTCCTTCAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACt < 1:1515209/149‑1 (MQ=255) tAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTcc < 1:1802352/149‑1 (MQ=255) tAAAACCTTCTTCCTTCAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTcc > 2:4221236/1‑149 (MQ=255) aaaaCCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTccc > 1:1759661/1‑149 (MQ=255) aaCCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGt > 2:2717923/1‑149 (MQ=255) ccTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGa > 1:298147/1‑149 (MQ=255) cttcttCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGAt > 2:1535653/1‑149 (MQ=255) cttccttcAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCa > 1:1199467/1‑149 (MQ=255) ttccttcAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCaa > 2:1694526/1‑149 (MQ=255) ttccttcAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCaa > 2:669942/1‑149 (MQ=255) ttccttcAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCaa > 1:2137906/1‑149 (MQ=255) ccttcAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAAtt > 1:2223140/1‑149 (MQ=255) ccttcAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAAtt > 1:1963391/1‑149 (MQ=255) cttcAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTg > 2:862161/1‑149 (MQ=255) tcAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGt < 2:3981748/149‑1 (MQ=255) cAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTg < 1:4627134/149‑1 (MQ=255) cAGCACGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTg < 2:1293280/149‑1 (MQ=255) aGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGa < 2:2348949/149‑1 (MQ=255) gCACGTTGGCGATTGCCACTTTCAGCTTGGAGGGAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGAc > 2:3376858/1‑149 (MQ=255) aCGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACaa < 1:1034395/149‑1 (MQ=255) aCGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACaa < 2:3073730/149‑1 (MQ=255) cGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACAAt < 1:1575038/149‑1 (MQ=255) cGTTGGCGATAGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACAAt < 1:3985091/149‑1 (MQ=255) tGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACAATTAc < 2:3674429/149‑1 (MQ=255) gCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACAATTACCa < 1:3270813/149‑1 (MQ=255) gATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACAATTACCAGc < 2:2881110/149‑1 (MQ=255) aTTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACAATTACCAGCt > 1:1393697/1‑149 (MQ=255) | TGCGCAGACCTGGGCGGCTGACACGCTGAATGCTTTCTACAACAGCTTTGCCCTGGAAATACTTCAGAGTAAGTTCCAGTTCAGGCTTGGTGTCGCCTTCAACTTTAAAATCTTCAATAAAACCTTCTTCCTTCAGCACGTTGGCGATTGCCACTTTCAGCTTGGAGGAAGGCATGGTGACCGCAGCTTTGTTCGCGGCCTGACCGTTACGGATACGGGTCAGCATATCCGCGATCGGATCTTGCATGCTCATCTGTCTTTACTCCCGTGATTCAATTGGTGACAATTACCAGCTA > CP009273/3439652‑3439947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |