| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,442,244 | C→A | 7.2% | L95F (TTG→TTT) | rplP ← | 50S ribosomal subunit protein L16 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,442,244 | 0 | C | A | 7.2% | 988.5 / 32.9 | 264 | L95F (TTG→TTT) | rplP | 50S ribosomal subunit protein L16 |
| Reads supporting (aligned to +/- strand): ref base C (119/126); new base A (8/11); total (127/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 | |||||||||||
Only 100 of 272 total aligned reads displayed.
TCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGA > CP009273/3442096‑3442392 | tcACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATc < 2:3710292/149‑1 (MQ=255) cGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAg > 2:3071423/1‑149 (MQ=255) cAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGc < 1:3174912/149‑1 (MQ=255) aGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCa > 1:2499321/1‑149 (MQ=255) tctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAAcc < 2:1441538/149‑1 (MQ=255) tctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAAcc < 2:3023541/149‑1 (MQ=255) ctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAAccc < 2:4419419/149‑1 (MQ=255) ctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAACTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAAccc < 2:2663512/149‑1 (MQ=255) ttGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAAt > 2:498465/1‑149 (MQ=255) tGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATa < 1:151783/149‑1 (MQ=255) gCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATAc < 2:4111531/149‑1 (MQ=255) tCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCa < 1:1470232/149‑1 (MQ=255) tCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCa < 1:1382150/149‑1 (MQ=255) cATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCAc > 2:4658651/1‑149 (MQ=255) aTTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACg > 2:3880093/1‑149 (MQ=255) ttACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGt < 2:3625272/149‑1 (MQ=255) tACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGACCACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGtt > 2:472164/1‑149 (MQ=255) aCATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGtta < 1:883655/149‑1 (MQ=255) cATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGTTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttac > 2:539068/1‑149 (MQ=255) cATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttac < 2:2699033/149‑1 (MQ=255) cATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttac < 2:859277/149‑1 (MQ=255) tCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacct < 1:4409995/149‑1 (MQ=255) tCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacct < 2:1904503/149‑1 (MQ=255) tCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacct < 1:4760195/149‑1 (MQ=255) cACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctt < 2:423496/149‑1 (MQ=255) aCCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATAATCCACGttacattt > 2:4714447/1‑149 (MQ=255) cGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctttac < 1:2641952/149‑1 (MQ=255) gTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctttacc < 1:2076294/149‑1 (MQ=255) gTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctttacc > 1:2366271/1‑149 (MQ=255) gTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGttacctttacc > 1:106733/1‑149 (MQ=255) cTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTtacctttacctt > 1:2196843/1‑149 (MQ=255) ttAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTacctttaccttt < 1:1165776/149‑1 (MQ=255) tACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCa > 2:816231/1‑149 (MQ=255) aCAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCAt > 2:436697/1‑149 (MQ=255) aCAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCAt > 1:3857888/1‑149 (MQ=255) aCAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCAt > 1:2908921/1‑149 (MQ=255) aaaGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATAc > 1:4253876/1‑149 (MQ=255) aaGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACACATACg > 2:2166880/1‑149 (MQ=255) gtggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCAc > 1:1633346/1‑149 (MQ=255) tggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACt > 1:4625835/1‑149 (MQ=255) gtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGc > 2:731869/1‑149 (MQ=255) ttttAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGcc > 1:599116/1‑149 (MQ=255) aTCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCgg > 2:1028857/1‑149 (MQ=255) tCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGc > 2:3118356/1‑149 (MQ=255) tCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGc > 1:1006477/1‑149 (MQ=255) cGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCt < 1:1302811/149‑1 (MQ=255) gCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCttt > 2:1086209/1‑149 (MQ=255) gCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCttt < 1:3709375/149‑1 (MQ=255) gCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCttt > 1:2743654/1‑149 (MQ=255) gTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCCGCGGCTTTTCa > 1:3329910/1‑149 (MQ=255) gctgctGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGAt > 2:1242512/1‑149 (MQ=255) ctgctgCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATc > 2:1614151/1‑149 (MQ=255) ctgctgCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATc < 2:1696655/149‑1 (MQ=255) ctgcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCAATTTAATACAGGACTTTACCCGGCTTAATCAAGGCAACCAAATTCTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGt < 1:4367511/149‑1 (MQ=255) tgcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGtt > 1:4066361/1‑149 (MQ=255) tgcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGtt > 1:2760391/1‑149 (MQ=255) ccAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTg > 1:472454/1‑149 (MQ=255) aGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTc > 2:3895291/1‑149 (MQ=255) aGCTTGAATGCGTCACGGGCCAGCTCGTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCGAGGCAACCCACTACTCCCCGTTACCTTGACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTc < 2:2434617/149‑1 (MQ=255) aTGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAac > 1:3452693/1‑149 (MQ=255) tGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAaca < 1:4451423/149‑1 (MQ=255) gCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAacac < 2:4082096/149‑1 (MQ=255) gCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAacac > 2:1593286/1‑149 (MQ=255) tCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACg < 1:3946085/149‑1 (MQ=255) cACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACgg > 1:2860121/1‑149 (MQ=255) cGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGAt > 2:3653662/1‑149 (MQ=255) gggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATc < 2:4705894/149‑1 (MQ=255) gCTCTTCCGGAACACCGTCCATTTCATACCGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATc < 2:1338154/149‑1 (MQ=255) gCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATc > 2:3879363/1‑149 (MQ=255) gCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGagc > 1:2836142/1‑147 (MQ=255) ctctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCt < 1:624891/149‑1 (MQ=255) ctctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCt < 1:3263235/149‑1 (MQ=255) ctctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCt < 2:1200437/149‑1 (MQ=255) ccGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCt < 2:3343536/149‑1 (MQ=255) ggAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTg < 1:3366457/149‑1 (MQ=255) aaCACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGAc < 2:2796387/149‑1 (MQ=255) cacCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGc > 2:2610395/1‑149 (MQ=255) cacCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGc < 2:1841950/149‑1 (MQ=255) tCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAAc < 1:498465/149‑1 (MQ=255) tttCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCa < 2:2288765/149‑1 (MQ=255) tACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGt < 1:2975000/149‑1 (MQ=255) aCAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTc < 2:3214049/149‑1 (MQ=255) aCAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTc < 1:4220015/149‑1 (MQ=255) aCAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTc < 1:1834522/149‑1 (MQ=255) ggACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGACCACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATa > 2:3963652/1‑149 (MQ=255) ggACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATa < 2:2932874/149‑1 (MQ=255) tttACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCac < 2:661508/149‑1 (MQ=255) tACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCacga < 1:4114261/149‑1 (MQ=255) aCCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCacgac > 2:1741966/1‑149 (MQ=255) cccGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCacgacg > 1:681738/1‑149 (MQ=255) ccGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGt < 1:3660695/149‑1 (MQ=255) gCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGtgct > 1:4570727/1‑149 (MQ=255) tGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGtgctgc > 1:2217321/1‑149 (MQ=255) tGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGtgctgc > 2:588532/1‑149 (MQ=255) gAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTgctgct > 2:2792505/1‑149 (MQ=255) gAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTgctgct > 1:404124/1‑149 (MQ=255) gAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTgctgct > 2:4301674/1‑149 (MQ=255) aaTCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCtt > 1:1661055/1‑149 (MQ=255) aaTCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCtt < 2:949442/149‑1 (MQ=255) aaTAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCtt < 1:1989226/149‑1 (MQ=255) | TCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGA > CP009273/3442096‑3442392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |