| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,457,896 | C→A | 7.4% | P206T (CCT→ACT) | gspL → | general secretory pathway component, cryptic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,457,896 | 0 | C | A | 7.4% | 1137.8 / 38.1 | 304 | P206T (CCT→ACT) | gspL | general secretory pathway component, cryptic |
| Reads supporting (aligned to +/- strand): ref base C (113/168); new base A (17/6); total (130/174) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.01e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 307 total aligned reads displayed.
CTGGCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTTCTCGCCA > CP009273/3457748‑3458043 | cTGGCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATc < 1:1944865/149‑1 (MQ=255) ggCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCt > 2:1163222/1‑149 (MQ=255) gCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTg < 2:4048603/149‑1 (MQ=255) cTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGa > 2:1857647/1‑149 (MQ=255) ttCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATa > 2:4585140/1‑149 (MQ=255) gCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCa < 2:1005972/149‑1 (MQ=255) gCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCa > 2:3704479/1‑149 (MQ=255) cAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCAt < 1:3212354/149‑1 (MQ=255) aGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATc > 1:771089/1‑149 (MQ=255) gTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCa > 1:3660823/1‑149 (MQ=255) gTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCa < 2:2218507/149‑1 (MQ=255) tGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCAc > 2:2299611/1‑149 (MQ=255) tGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCAc < 2:2788160/149‑1 (MQ=255) ccGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTg < 1:4713403/149‑1 (MQ=255) gCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAg < 1:3386086/149‑1 (MQ=255) cacaTGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGt < 1:3902317/149‑1 (MQ=255) caTGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGttt > 1:311983/1‑149 (MQ=255) aTGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTg < 2:28051/149‑1 (MQ=255) gCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTa < 1:3450408/149‑1 (MQ=255) gCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTa > 2:3402136/1‑149 (MQ=255) ccTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTAt < 2:672825/149‑1 (MQ=255) cTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTAtt > 1:4185179/1‑149 (MQ=255) cTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTAtt > 1:3832631/1‑149 (MQ=255) ttCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTc > 2:1079630/1‑149 (MQ=255) ttCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTc < 2:2159186/149‑1 (MQ=255) tCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCt < 1:1843232/149‑1 (MQ=255) cAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTg > 2:133396/1‑149 (MQ=255) aCGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGcc < 2:1583720/149‑1 (MQ=255) aaCTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGat > 2:1486222/1‑149 (MQ=255) aaCTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGat < 2:2008078/149‑1 (MQ=255) aCTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGata > 1:134548/1‑149 (MQ=255) cTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGatat < 2:866573/149‑1 (MQ=255) tGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATAtt < 2:232642/149‑1 (MQ=255) tGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATAtt > 1:4447890/1‑149 (MQ=255) tGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATAtt < 1:3204808/149‑1 (MQ=255) tGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATAtt < 2:572785/149‑1 (MQ=255) tGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATAtt < 2:502070/149‑1 (MQ=255) aTGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCa < 1:3635359/149‑1 (MQ=255) gAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCAtt < 1:3545543/149‑1 (MQ=255) gAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCAtt < 2:2765685/149‑1 (MQ=255) acacTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTcc < 1:356482/149‑1 (MQ=255) acacTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTcc < 1:1302710/149‑1 (MQ=255) cacTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCa < 2:4276504/149‑1 (MQ=255) acTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCAGACTGAAATACCATCACTGAGTGTGGATTCTGCCGCTATTGCATTCCAg > 1:942751/1‑149 (MQ=255) cTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAgc > 1:3385286/1‑149 (MQ=255) tGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAgcg > 1:3982400/1‑149 (MQ=255) ttACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTa < 1:1006298/149‑1 (MQ=255) cAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGa < 2:3029162/149‑1 (MQ=255) gCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACa < 1:590313/149‑1 (MQ=255) aTCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACAtg > 1:4403513/1‑149 (MQ=255) gcCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATgg < 2:3437045/149‑1 (MQ=255) aGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTAtt < 2:4069162/149‑1 (MQ=255) ttCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTAttttt < 1:2005246/149‑1 (MQ=255) tCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTc > 1:2746080/1‑149 (MQ=255) gCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTa < 1:2793479/149‑1 (MQ=255) ccTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTaa > 2:3809237/1‑149 (MQ=255) ccTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTaa > 2:1420469/1‑149 (MQ=255) tGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAAc < 1:2411854/149‑1 (MQ=255) gagaATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACa < 1:4549307/149‑1 (MQ=255) gaATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGa > 2:1994567/1‑149 (MQ=255) aaTATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaa > 1:1254180/1‑149 (MQ=255) aaTATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaa > 1:1164729/1‑149 (MQ=255) atatGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaa < 1:851013/149‑1 (MQ=255) atatGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaa > 2:4213982/1‑149 (MQ=255) atatGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaa > 1:1121491/1‑149 (MQ=255) tatGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaaa > 2:3039944/1‑149 (MQ=255) atGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAAc > 1:1610784/1‑149 (MQ=255) atGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAAc < 2:2974707/149‑1 (MQ=255) atGCTTTGTTATGGTGTAGTACCTCACGGCGGTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGTTATTTTTCGTAAACAGAAAAc < 2:1787871/149‑1 (MQ=255) ttGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTaa < 1:1657072/149‑1 (MQ=255) ttGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTaa < 1:2132857/149‑1 (MQ=255) tGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAg < 2:726729/149‑1 (MQ=255) ttATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCa < 2:4444164/149‑1 (MQ=255) tATGGTGTAGTACCTCAAGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCaa > 2:4123664/1‑149 (MQ=255) aTGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCaaa < 2:2635680/149‑1 (MQ=255) tGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAAt < 1:2317507/149‑1 (MQ=255) gtagtaCCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCggg < 1:3615571/149‑1 (MQ=255) tagtaCCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGa < 1:2895266/149‑1 (MQ=255) agtaCCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGaa < 1:2865079/149‑1 (MQ=255) gtaCCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGaaa < 1:1931917/149‑1 (MQ=255) gtaCCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGaaa > 2:1102223/1‑149 (MQ=255) tCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGc < 1:1069167/149‑1 (MQ=255) cACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCt < 2:607265/149‑1 (MQ=255) aCGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTc > 2:88908/1‑149 (MQ=255) gTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTcgcccg > 2:3216424/1‑149 (MQ=255) tGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTcgcccgcc < 2:3982317/149‑1 (MQ=255) tGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTcgcccgcc < 2:63325/149‑1 (MQ=255) gCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCt > 2:790165/1‑149 (MQ=255) ggCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAg < 1:2373279/149‑1 (MQ=255) ggCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAg < 1:1528359/149‑1 (MQ=255) gCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGt > 2:1123171/1‑149 (MQ=255) aTCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGc < 1:476278/149‑1 (MQ=255) aCTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGtc > 1:1473218/1‑149 (MQ=255) cTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGtct < 2:2520195/149‑1 (MQ=255) cTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGtct < 2:3057210/149‑1 (MQ=255) ttATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGtctc < 2:3493820/149‑1 (MQ=255) tCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATTACATGATGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCgat > 1:2550505/1‑147 (MQ=255) tCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGtt > 1:3766333/1‑149 (MQ=255) cAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTtct < 2:2986441/149‑1 (MQ=255) aTCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTTCTCGcc > 2:2108939/1‑149 (MQ=255) | CTGGCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACCTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTTCTCGCCA > CP009273/3457748‑3458043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |