| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,485,872 | C→A | 11.9% | intergenic (‑216/‑55) | ppiA ← / → tsgA | peptidyl‑prolyl cis‑trans isomerase A (rotamase A)/putative transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,485,872 | 0 | C | A | 11.9% | 1018.9 / 72.6 | 304 | intergenic (‑216/‑55) | ppiA/tsgA | peptidyl‑prolyl cis‑trans isomerase A (rotamase A)/putative transporter |
| Reads supporting (aligned to +/- strand): ref base C (164/103); new base A (22/15); total (186/118) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 307 total aligned reads displayed.
AGGCCATCCCTTTACCTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGG > CP009273/3485724‑3486020 | tCCCTTTACCTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAATCAGATCACAAAATCACCTAAAATCGCCCGc > 2:2306484/1‑149 (MQ=255) tCCCTTTACCTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGc < 1:3040852/149‑1 (MQ=255) ccTTTACCTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTc > 1:4038472/1‑149 (MQ=255) cTTTACCTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTcg > 1:4423936/1‑149 (MQ=255) tACCTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCgg > 1:2395816/1‑149 (MQ=255) aCCTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGc < 1:4239266/149‑1 (MQ=255) cTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCat > 1:2996462/1‑149 (MQ=255) ttttACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATcc > 2:4432971/1‑149 (MQ=255) tACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGc < 1:1418680/149‑1 (MQ=255) tACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGc > 2:2091575/1‑149 (MQ=255) tACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGc < 2:3721167/149‑1 (MQ=255) aCGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCt < 1:2650765/149‑1 (MQ=255) gTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTAt > 2:43274/1‑149 (MQ=255) atatatGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATTACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCatttta < 2:3266276/149‑1 (MQ=255) gTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGGCATTTTATTTTTg > 2:3064073/1‑149 (MQ=255) tAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCGATGCCATTTTATTTTTGa > 1:2228027/1‑149 (MQ=255) aaCCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGaa < 1:2792347/149‑1 (MQ=255) aCCTGACGATCACTTTTTATTCCGTGATCGAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAAc > 2:183114/1‑149 (MQ=255) aTCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCa > 1:1901116/1‑149 (MQ=255) aTCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCa > 2:2613970/1‑149 (MQ=255) tCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCaa > 2:2411787/1‑149 (MQ=255) tCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCaa < 1:1955120/149‑1 (MQ=255) aCTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTTCAATAAAACATTTAAACAGATCACAAAATCACATAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATc < 2:3363146/149‑1 (MQ=255) aCTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTCTGCCATTTTATTTTTGAACGCAGGCCAATc > 1:2447577/1‑149 (MQ=255) aCTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATc < 1:4779000/149‑1 (MQ=255) tttttATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCAt > 1:1175452/1‑149 (MQ=255) ttttATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATg > 1:2124267/1‑149 (MQ=255) ttATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGAc < 1:686673/149‑1 (MQ=255) ttATTCCGTGATCAAAATCACCTCTTAAAATGCAATGTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGAc < 2:4017567/149‑1 (MQ=255) ttAGTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGAc < 2:1910047/149‑1 (MQ=255) aTTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTa > 2:3643643/1‑149 (MQ=255) aTTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTAAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTa > 1:3881660/1‑149 (MQ=255) ttCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTaa < 1:3368544/149‑1 (MQ=255) ttCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTaa < 1:1820584/149‑1 (MQ=255) tCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAAc < 1:3683312/149‑1 (MQ=255) gTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGc > 2:713994/1‑149 (MQ=255) tGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCa > 2:1749002/1‑149 (MQ=255) gATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCaa > 1:4563872/1‑149 (MQ=255) aTCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAAt > 2:247294/1‑149 (MQ=255) aaaTCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCa > 1:3573263/1‑149 (MQ=255) aaaTCACCTCTTAAAATGCAATTTAGCAACCGATTACAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCa < 2:1005854/149‑1 (MQ=255) aaTCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCAt > 2:2569694/1‑149 (MQ=255) cACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCaa < 1:799927/149‑1 (MQ=255) aCCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAg > 1:921093/1‑149 (MQ=255) aCCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCACTCGCATCAAg > 2:4419855/1‑149 (MQ=255) ccTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGc > 1:461911/1‑149 (MQ=255) ccTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGc > 1:2207846/1‑149 (MQ=255) ttAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTcac > 2:4291449/1‑149 (MQ=255) ttAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTcac > 1:3291787/1‑149 (MQ=255) aaaaTGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACAt > 2:4231490/1‑149 (MQ=255) aaaTGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATg > 1:1202257/1‑149 (MQ=255) aTGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGa < 2:2033267/149‑1 (MQ=255) aTGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACAAGGa > 2:2594686/1‑149 (MQ=255) tGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGAt < 2:4774520/149‑1 (MQ=255) tGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGAt < 2:610766/149‑1 (MQ=255) gCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGAtt > 2:728305/1‑149 (MQ=255) aTTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGc < 1:3717875/149‑1 (MQ=255) tttAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACCTGGATTAGCt > 2:3776084/1‑149 (MQ=255) tAGCAACCGATTGCAATAAAGCATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCttt < 1:3590040/149‑1 (MQ=255) tAGCAACCGAGTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCCGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCttt > 2:4151381/1‑149 (MQ=255) aGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTtc > 2:2885262/1‑149 (MQ=255) gCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTtct > 1:1712610/1‑149 (MQ=255) aaCCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTtctct > 2:3901251/1‑149 (MQ=255) aaCCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTtctct < 1:3133689/149‑1 (MQ=255) aaCCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTtctct > 2:549437/1‑149 (MQ=255) aTTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTAc < 2:3573263/149‑1 (MQ=255) cAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCac > 2:1212780/1‑149 (MQ=255) aaaaCATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCactgac > 1:3923107/1‑149 (MQ=255) aaaaCATTTAAACAGATCACAAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCactgac > 1:1534041/1‑149 (MQ=255) aaaCATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCactgact > 1:2780473/1‑149 (MQ=255) aCATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTgg < 1:1303925/149‑1 (MQ=255) aCATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTgg > 2:1599637/1‑149 (MQ=255) cATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGt < 1:2464079/149‑1 (MQ=255) cATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGt > 1:1743026/1‑149 (MQ=255) aTTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTg > 1:4672267/1‑149 (MQ=255) aTTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTg > 2:4686683/1‑149 (MQ=255) aCAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTgg > 2:1305426/1‑149 (MQ=255) aCAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTgg > 2:34779/1‑149 (MQ=255) aGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGtt < 2:2377173/149‑1 (MQ=255) aGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGtt > 2:1433385/1‑149 (MQ=255) aGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGAGTAGCTTTCTCTCCTACGCACTGACTGGTGCggtggtg > 2:1433541/1‑148 (MQ=255) gATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTa < 1:1019517/149‑1 (MQ=255) aTCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTAt > 2:864799/1‑149 (MQ=255) acaAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGt > 1:3769108/1‑149 (MQ=255) caAAATCACCTAAAATAGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTc < 1:615502/149‑1 (MQ=255) aaaTCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCAc < 2:2172255/149‑1 (MQ=255) aaaTCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCAc > 1:2823266/1‑149 (MQ=255) aaTCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCAcc < 1:1093077/149‑1 (MQ=255) aaTCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCAcc > 1:2620471/1‑149 (MQ=255) aCCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGa < 1:743825/149‑1 (MQ=255) aCCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGa > 1:955998/1‑149 (MQ=255) ccTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGAt > 1:3500826/1‑149 (MQ=255) tAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATgg < 2:4592753/149‑1 (MQ=255) tAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATgg < 2:2202447/149‑1 (MQ=255) aaacTCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGt < 1:425415/149‑1 (MQ=255) aaaaTCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGt > 1:374967/1‑149 (MQ=255) aaaTCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTg < 2:2503926/149‑1 (MQ=255) aaTCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGa < 1:2501382/149‑1 (MQ=255) tCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATg < 1:3242814/149‑1 (MQ=255) cGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATgg < 2:169670/149‑1 (MQ=255) | AGGCCATCCCTTTACCTAATTTTACGTATCTGAAATATATGTAACCTGACGATCACTTTTTATTCCGTGATCAAAATCACCTCTTAAAATGCAATTTAGCAACCGATTGCAATAAAACATTTAAACAGATCACAAAATCACCTAAAATCGCCCGCTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCATGACTAACAGCAATCGCATCAAGCTCACATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGG > CP009273/3485724‑3486020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |