Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,646,984 G→T 85.5% pseudogene (394/483 nt) yhiS → pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,646,9840GT85.5% 610.5 / 112.4 260pseudogene (394/483 nt)yhiSpseudogene
Reads supporting (aligned to +/- strand):  ref base G (18/20);  new base T (102/120);  total (120/140)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 260 total aligned reads displayed.

TTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTTAA  >  CP009273/3646838‑3647130
                                                                                                                                                   |                                                                                                                                                  
ttAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGaa                                                                                                                                                  <  1:821577/149‑1 (MQ=255)
ttAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGaa                                                                                                                                                  <  1:3846961/149‑1 (MQ=255)
ttAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGaa                                                                                                                                                  <  1:3375224/149‑1 (MQ=255)
  aaaGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTaaaa                                                                                                                                                <  2:2652347/149‑1 (MQ=255)
    aGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCACTTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAg                                                                                                                                              >  2:3037961/1‑149 (MQ=255)
     gCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGa                                                                                                                                             <  1:3252753/149‑1 (MQ=255)
      ccTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGat                                                                                                                                            <  2:1358582/149‑1 (MQ=255)
      ccTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCA‑AAAAAAAATGTCACACACGCCTTAATTAAAGAGGCCACTGACTAATTAAAAAGat                                                                                                                                            >  1:4675578/1‑149 (MQ=255)
        tttACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGatat                                                                                                                                          <  2:93114/149‑1 (MQ=255)
        tttACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGatat                                                                                                                                          <  2:2416643/149‑1 (MQ=255)
           aCGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATaaa                                                                                                                                       >  2:4234702/1‑149 (MQ=255)
             gACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAAtt                                                                                                                                     >  2:60108/1‑149 (MQ=255)
              acacTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTa                                                                                                                                    >  1:2699214/1‑149 (MQ=255)
              acacTCTCCAGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTa                                                                                                                                    <  2:3367208/149‑1 (MQ=255)
                acTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATg                                                                                                                                  >  1:1040597/1‑149 (MQ=255)
                acTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATg                                                                                                                                  >  1:1499951/1‑149 (MQ=255)
                 ctctCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATgg                                                                                                                                 >  2:1781043/1‑149 (MQ=255)
                 ctctCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATgg                                                                                                                                 >  2:4171720/1‑149 (MQ=255)
                      ccGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTgg                                                                                                                            <  2:4396648/149‑1 (MQ=255)
                          tACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑CAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaat                                                                                                                        <  1:878912/149‑1 (MQ=255)
                            cAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaatag                                                                                                                      <  2:1072/149‑1 (MQ=255)
                               tAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaatagaaa                                                                                                                   <  2:7547/149‑1 (MQ=255)
                                aaaaTTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaatagaaat                                                                                                                  >  2:1365550/1‑149 (MQ=255)
                                 aaaTTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaatagaaata                                                                                                                 >  2:3806346/1‑149 (MQ=255)
                                  aaTTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑‑AAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATAcc                                                                                                               <  2:2738405/149‑1 (MQ=255)
                                    ttCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCa                                                                                                              >  1:4234144/1‑149 (MQ=255)
                                       aaaCATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCt                                                                                                           <  1:301111/149‑1 (MQ=255)
                                          cATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGt                                                                                                        >  1:1600302/1‑149 (MQ=255)
                                            tGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTaa                                                                                                      >  1:1716451/1‑149 (MQ=255)
                                              ggCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTaaaa                                                                                                    >  1:3386132/1‑149 (MQ=255)
                                                 aGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAgta                                                                                                 <  2:1815544/149‑3 (MQ=255)
                                                  gAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAAt                                                                                                >  1:1108295/1‑149 (MQ=255)
                                                  gAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAAt                                                                                                >  2:3247213/1‑149 (MQ=255)
                                                    aaTGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTc                                                                                              >  2:2045249/1‑149 (MQ=255)
                                                       gTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCt                                                                                           <  2:4057273/149‑1 (MQ=255)
                                                       gTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCt                                                                                           >  2:2594666/1‑149 (MQ=255)
                                                         cTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAATAGAATTCGCTTa                                                                                         >  2:4001897/1‑149 (MQ=255)
                                                            aaTATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCa                                                                                      >  2:4137120/1‑149 (MQ=255)
                                                            aaTATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCa                                                                                      >  2:2320015/1‑149 (MQ=255)
                                                               atCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAAt                                                                                   <  2:1465233/149‑1 (MQ=255)
                                                               atCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATG‑AAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATc                                                                                  >  1:4584546/1‑149 (MQ=255)
                                                                 cAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCa                                                                                 <  2:209068/149‑1 (MQ=255)
                                                                 cAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCa                                                                                 <  2:209115/149‑1 (MQ=255)
                                                                    ttCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTa                                                                              >  2:674313/1‑149 (MQ=255)
                                                                    ttCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTa                                                                              <  1:1320533/149‑1 (MQ=255)
                                                                      cGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTAcc                                                                            <  1:1981605/149‑1 (MQ=255)
                                                                        aaGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAg                                                                          >  2:13029/1‑149 (MQ=255)
                                                                          gTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGaa                                                                        <  1:3354576/149‑1 (MQ=255)
                                                                           tATTTCAATACGAGACGCTTAACCCAAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGaa                                                                        <  2:3137861/149‑1 (MQ=255)
                                                                           tATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAat                                                                       >  2:1691143/1‑149 (MQ=255)
                                                                           tATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAat                                                                       >  1:2443850/1‑149 (MQ=255)
                                                                           tATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAat                                                                       >  2:3690511/1‑149 (MQ=255)
                                                                            aTTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAata                                                                      >  2:1192041/1‑149 (MQ=255)
                                                                               tCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATataa                                                                   >  2:1336155/1‑149 (MQ=255)
                                                                               tCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATataa                                                                   <  1:734709/149‑1 (MQ=255)
                                                                                 aaTACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATataata                                                                 <  1:1552682/149‑1 (MQ=255)
                                                                                 aaTACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATataata                                                                 <  1:3943475/149‑1 (MQ=255)
                                                                                  aTACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATAc                                                                <  1:1420753/149‑1 (MQ=255)
                                                                                  aTACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATAc                                                                <  1:3809764/149‑1 (MQ=255)
                                                                                  aTACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATAc                                                                <  1:4465520/149‑1 (MQ=255)
                                                                                    aCGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCa                                                              <  1:3548410/149‑1 (MQ=255)
                                                                                    aCGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCa                                                              <  2:686886/149‑1 (MQ=255)
                                                                                    aCGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCa                                                              >  1:2631255/1‑149 (MQ=255)
                                                                                     cGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCat                                                             <  1:2310542/149‑1 (MQ=255)
                                                                                     cGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCat                                                             <  1:3688235/149‑1 (MQ=255)
                                                                                       agaCGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCataa                                                           <  2:2885745/149‑1 (MQ=255)
                                                                                        gaCGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCataat                                                          >  1:2121430/1‑149 (MQ=255)
                                                                                        gaCGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCataat                                                          >  1:65328/1‑149 (MQ=255)
                                                                                        gaCGCTTAACCC‑‑AAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCataata                                                         <  2:1973236/149‑1 (MQ=255)
                                                                                          cGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAatat                                                        <  2:4459546/149‑1 (MQ=255)
                                                                                                 ccc‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGattat                                                 <  1:391309/149‑1 (MQ=255)
                                                                                                   c‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGAttatta                                               <  2:1669399/149‑1 (MQ=255)
                                                                                                     aaaaaaaaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAg                                              >  1:1252675/1‑149 (MQ=255)
                                                                                                       aaaaaaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCa                                            >  1:4679947/1‑149 (MQ=255)
                                                                                                          aaaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACtt                                         >  1:3360849/1‑149 (MQ=255)
                                                                                                           aaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACttt                                        <  2:1573778/149‑1 (MQ=255)
                                                                                                             tGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTtat                                      <  1:522289/149‑1 (MQ=255)
                                                                                                               tCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATaa                                    <  2:3527843/149‑1 (MQ=255)
                                                                                                               tCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATaa                                    <  2:3527979/149‑1 (MQ=255)
                                                                                                               tCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATaa                                    <  1:343721/149‑1 (MQ=255)
                                                                                                                 acacacGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATc                                  <  2:3342508/149‑1 (MQ=255)
                                                                                                                 acacacGCCTTATTTAAAGAGGCCACTGCATAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATc                                  <  2:4297876/149‑1 (MQ=255)
                                                                                                                  cacacGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCa                                 <  2:2678636/149‑1 (MQ=255)
                                                                                                                      cGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGa                             <  1:616797/149‑1 (MQ=255)
                                                                                                                        ccTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAAt                           >  1:3139756/1‑149 (MQ=255)
                                                                                                                          ttATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATaa                         <  1:2884087/149‑1 (MQ=255)
                                                                                                                           tATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATaaa                        >  1:1023654/1‑149 (MQ=255)
                                                                                                                           tATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATaaa                        >  1:3064628/1‑149 (MQ=255)
                                                                                                                                    agGCCACTGACTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCTCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAttt               <  2:2735245/149‑1 (MQ=255)
                                                                                                                                     ggCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtttt              >  2:2000319/1‑149 (MQ=255)
                                                                                                                                      gCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTa             <  1:1901290/149‑1 (MQ=255)
                                                                                                                                       ccACTGCCTAATTAAAAAGATATACATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTAt            <  2:4598321/149‑1 (MQ=255)
                                                                                                                                        cACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg           <  1:4150969/149‑1 (MQ=255)
                                                                                                                                         aCTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGt          >  1:3519562/1‑149 (MQ=255)
                                                                                                                                             ccTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACtt      >  1:2540421/1‑149 (MQ=255)
                                                                                                                                              cTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACttt     <  1:2272620/149‑1 (MQ=255)
                                                                                                                                               tAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACtttt    <  1:201129/149‑1 (MQ=255)
                                                                                                                                               tAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACtttt    >  2:3865793/1‑149 (MQ=255)
                                                                                                                                                aaTTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTTa   >  1:4104660/1‑149 (MQ=255)
                                                                                                                                                aaTTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTTa   <  2:4722947/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TTAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCC‑AAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTTAA  >  CP009273/3646838‑3647130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑