| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,747,595 | C→A | 6.4% | W65L (TGG→TTG) | yiaW ← | DUF3302 family inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,747,595 | 0 | C | A | 6.4% | 1687.2 / 11.6 | 541 | W65L (TGG→TTG) | yiaW | DUF3302 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (289/195); new base A (2/55); total (291/250) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.91e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 555 total aligned reads displayed.
TCAGTAAATCCATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATAGAAGATCACCAG > CP009273/3747447‑3747743 | gTAAATCCATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCaaa < 2:547230/149‑1 (MQ=255) gTAAATCCATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCaaa > 1:1691387/1‑149 (MQ=255) aTCCATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCca > 1:1260566/1‑149 (MQ=255) aTCCATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCca > 1:4589264/1‑149 (MQ=255) aTCCATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCca > 1:856214/1‑149 (MQ=255) ccATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCcaca > 2:1117885/1‑149 (MQ=255) cATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACaa < 2:2938239/149‑1 (MQ=255) cATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACaa > 2:1291865/1‑149 (MQ=255) aTAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACaaa > 2:3920979/1‑149 (MQ=255) tAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACaaaa > 2:2125928/1‑149 (MQ=255) tAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACaaaa > 2:3144890/1‑149 (MQ=255) aaGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACaaaaa > 1:3309622/1‑149 (MQ=255) aGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAAc > 2:3736013/1‑149 (MQ=255) gTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACg > 1:3109304/1‑149 (MQ=255) gTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACg > 1:2162830/1‑149 (MQ=255) gTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACg > 1:378551/1‑149 (MQ=255) tATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACgg > 1:3719756/1‑149 (MQ=255) ttACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGcc < 2:1679393/149‑1 (MQ=255) ttACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGcc > 2:793913/1‑149 (MQ=255) ttACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGcc > 2:4053733/1‑149 (MQ=255) ttACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGcc > 2:3348802/1‑149 (MQ=255) aCTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAg > 2:1481053/1‑149 (MQ=255) tCGTCAGAAGTGTATTTGAGTTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTTTTGCAGTTGAATAACGTATGATTCTTGGATTTGAATTCCCCATCCCCGCTCCGGGCGTTAACGCGTGGCCCAAATCCACAAAAACGGCCAGAt < 2:3054917/149‑1 (MQ=255) tCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGAt > 1:4155307/1‑149 (MQ=255) gcGGCATAAGCGGTTTTGTTGTCGGGGAGCTGTTTCTCCAGCCCGGCAAGGCGCTGTTGCAGTTGATTACGGGATGAATATTGGTTTTGCTTTCCCCATCCCCGCTCGGGGGGGTAATGCGTGGCCAAAATCAACAAAAACGGCCAGAt < 2:3823831/148‑1 (MQ=255) cGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATa > 1:886843/1‑149 (MQ=255) gCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAAc > 2:1900018/1‑149 (MQ=255) gCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAAc > 1:579499/1‑149 (MQ=255) gCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAAc > 1:2717039/1‑149 (MQ=255) agaagaGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACAt > 2:602009/1‑149 (MQ=255) gaagaGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATg > 1:3195873/1‑149 (MQ=255) gtggATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCTGTTGAATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTaa < 2:1820383/147‑1 (MQ=255) gagGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTaa > 2:3455335/1‑149 (MQ=255) gATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGt < 2:4347844/149‑1 (MQ=255) gATTGGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATTAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGTTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGt < 2:2598485/149‑1 (MQ=255) aTTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTa > 1:4440711/1‑149 (MQ=255) aTTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTa > 1:2547355/1‑149 (MQ=255) tttGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTaa > 1:1091157/1‑149 (MQ=255) ggcttgCTGTTTCTCCCGCCCGGAATTGCGCTGTTGATTTTGCATAACGTATTAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCAAAATCCAAAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCa < 1:298962/144‑1 (MQ=255) cGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCTGTTGCATAACGTATTAATCAGGGATTTGATTTCCCCATCCCCGCTCGGGGCGGTAAAGCGTGGCCCAAACCCACAAACACGGCCAGATAACATGTAACGTAAAAAGACTCAcc < 1:3906679/149‑1 (MQ=255) gTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCa > 2:4177302/1‑149 (MQ=255) tttCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAg > 2:4590245/1‑149 (MQ=255) ttCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGc > 1:209976/1‑149 (MQ=255) tcCAGCCCGGCATTGGGCTGTTGCTGTGGAATAAGGTATGAATCATGGATTTGAATTCCCCATCCCCGCGCCGGGGGGTAATGGGTGGCCAAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAAc < 1:3507263/149‑1 (MQ=255) cAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACAt > 2:2186153/1‑149 (MQ=255) aGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATg > 2:1452225/1‑149 (MQ=255) gCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGa > 1:4012467/1‑149 (MQ=255) gCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGc > 1:1121698/1‑149 (MQ=255) aaTGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGt > 1:1006481/1‑149 (MQ=255) tGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCNGGNCGGTAAAGCGTGNCCCAAATCCACAAANACGGCCAGATAACATGTAACGTAAAAAGACTCACNCAACCAGCAACATGAATGGCGTCg > 1:343171/1‑149 (MQ=255) tGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCg > 1:3663101/1‑149 (MQ=255) gcTGTTGCAGTTGCATAACGGATGAAACATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACACACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCa < 2:3083240/149‑1 (MQ=255) gcTGTTGAAGTTGCAAAACGGATTAATAATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCTTGGCCCAAATCAACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCa < 1:4387441/149‑1 (MQ=255) gttgcagttgcaTAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGa > 2:2653619/1‑149 (MQ=255) ttgcagttgcaTAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAACTCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAg > 2:449192/1‑149 (MQ=255) agttgcaTAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGgatg > 1:2780489/1‑149 (MQ=255) agttgcaTAACGGATGAATCAGGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGgatg < 2:3520702/149‑1 (MQ=255) caTAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTAc > 1:15418/1‑149 (MQ=255) aaCGGATTAATCTTGGATTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCAAAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGtt < 1:2286643/149‑1 (MQ=255) cGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGCTGATTACGtttt > 2:3793659/1‑149 (MQ=255) gtattaaTCTTGGCTGTGCATGCCCCACCCCCGCGCGGGGCGTTAAAGCGTGCCCCAAACCCACAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGttttt < 1:2448467/144‑1 (MQ=255) ggtttaaTCATGGCTTTGCATCCCCCCCCCCCGCGCCGGGGGTAAAAGCGTGCCCAAAACCCAAAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGttttt < 1:4075861/144‑1 (MQ=255) ggATGAATCATGGCTTTGCATGCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATCACGttttt < 2:2710823/149‑1 (MQ=255) tattaaTCATGGCTTTGCATTCCCCACCCCCGCGCCGGGCGTTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGtttttt < 1:150289/145‑1 (MQ=255) gATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGtttttt > 1:3620320/1‑149 (MQ=255) ttGAATCATGGCTTTGCTTTCCCCATCCCCGCTCCGGGCGTTAACGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTg < 1:1919782/148‑1 (MQ=255) aaTCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCa > 2:1210388/1‑149 (MQ=255) cATGGCTTTGCAGTCCCCACCCCCGCGCCGGGCGGTAAAGCGTGGCCCAAAACCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATc < 2:431313/149‑1 (MQ=255) ttGGCTTTGCATTCCCCATCCCCGCTCCGGGCGTTAAAGCGTGGCCCAAAACAAAAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCa < 1:2918570/148‑1 (MQ=255) aTGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCa < 2:1571537/149‑1 (MQ=255) tGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAg < 2:2241493/149‑1 (MQ=255) gCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGt > 1:2612066/1‑149 (MQ=255) gCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGt < 2:2339067/149‑1 (MQ=255) tttGCATTCCCCCTCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCCGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAg < 2:2757226/149‑1 (MQ=255) tttGCAGTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAg < 2:764246/149‑1 (MQ=255) tGCATTCCCCAGCCCCGCGCCGGGCGGTAAAGGGTGGCCCAAATCCACAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAggg < 1:618550/149‑1 (MQ=255) cATTCCCCATCCCCGCTCCGGGCGGAAAAGCGTGGCCCAAATCCACAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGaa < 2:3000679/149‑1 (MQ=255) ttCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAata > 1:2699338/1‑149 (MQ=255) ccATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCAt > 1:4265882/1‑149 (MQ=255) aTCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGt < 2:1941001/149‑1 (MQ=255) tCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTa > 2:1537503/1‑149 (MQ=255) cccGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTaaa > 1:3387635/1‑149 (MQ=255) cGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAaat < 1:1829505/149‑1 (MQ=255) tCCGGGCGGTAACGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAaataat < 1:1901338/149‑1 (MQ=255) gggCGGTAACGCGTGGCCCAAACCCAAAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGAt < 1:4221763/149‑1 (MQ=255) gggCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGAt > 2:4403618/1‑149 (MQ=255) ggCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATc < 1:502571/149‑1 (MQ=255) gggttAAAGCGTGGCCCAAAACCAAAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATcc < 1:1446879/145‑1 (MQ=255) ggTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAACAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCa < 2:290209/149‑1 (MQ=255) tAACGCGTGGCCCAACTCCACAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATa < 2:2070751/149‑1 (MQ=255) tAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATa > 2:90140/1‑149 (MQ=255) tAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATa > 2:2483132/1‑149 (MQ=255) aacgCGGGGCCCAAATCCAAAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATag < 1:970577/146‑1 (MQ=255) aaaGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATag > 1:2370237/1‑149 (MQ=255) aaaGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATag > 2:2727456/1‑149 (MQ=255) ggTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATagaaga < 1:666420/148‑1 (MQ=255) cGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATagaaga < 1:1193164/149‑1 (MQ=255) cGTGGCCAAAAACCAAAAACACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATagaaga < 1:1343203/149‑1 (MQ=255) ccAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATAGAAGATCACCa > 1:284248/1‑149 (MQ=255) ccAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATAGAAGATCACCa < 1:4630640/149‑1 (MQ=255) | TCAGTAAATCCATAAGTATTACTCGGCAGAAGAGGATTTGATGTCGGCGAGCTGTTTCTCCAGCCCGGCAATGCGCTGTTGCAGTTGCATAACGGATGAATCATGGCTTTGCATTCCCCATCCCCGCTCCGGGCGGTAAAGCGTGGCCCAAATCCACAAAAACGGCCAGATAACATGTAACGTAAAAAGACTCACCCAACCAGCAACATGAATGGCGTCGGCATGAGGATGATTACGTTTTTTGGCAATCAGGTAGGGAATATCATGTAAAATAATGATCCCATAGAAGATCACCAG > CP009273/3747447‑3747743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |