| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,813,962 | T→A | 10.1% | Q190L (CAA→CTA) | ligB ← | DNA ligase, NAD(+)‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,813,962 | 0 | T | A | 10.1% | 966.1 / 79.0 | 308 | Q190L (CAA→CTA) | ligB | DNA ligase, NAD(+)‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (148/129); new base A (15/16); total (163/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
Only 100 of 330 total aligned reads displayed.
AGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTGCTTT > CP009273/3813815‑3814110 | aGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATttgttgttg < 2:1236013/149‑1 (MQ=255) ctctTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGa < 1:3915878/149‑1 (MQ=255) ctTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGata < 1:1122730/149‑1 (MQ=255) ctTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGata < 2:4232942/149‑1 (MQ=255) ttttAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTAGGatat < 2:133511/149‑1 (MQ=255) ttttAAACGAACAGACATTAACTGCGGTCCATCCGGCAATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGatat < 2:2835281/149‑1 (MQ=255) tttAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATg > 2:892558/1‑149 (MQ=255) ttAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGc < 1:675411/149‑1 (MQ=255) tAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGcc > 1:3185682/1‑149 (MQ=255) tAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGcc > 2:1757358/1‑149 (MQ=255) tAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTGTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGcc < 1:4369300/149‑1 (MQ=255) aaaCGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGccc < 1:2764559/149‑1 (MQ=255) aaCGATCAGACATTAACTGCGGTCCATCCGGCCAGGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGcccc < 1:464252/149‑1 (MQ=255) cGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTc < 2:658799/149‑1 (MQ=255) cAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTAGGATATGCCCCTCgcgc > 1:1803676/1‑149 (MQ=255) gACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTg > 1:648993/1‑149 (MQ=255) aTTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGgag < 2:3824424/149‑1 (MQ=255) ggTCCATCCGGCCATGCCCAGACAAACACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTc < 2:4090201/149‑1 (MQ=255) gTCCATCCGGCCATGCCCAGACAAACACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTcc < 1:3695527/149‑1 (MQ=255) gTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCCTTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTcc > 2:4679618/1‑149 (MQ=255) ccATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTcccc > 2:3902872/1‑149 (MQ=255) cATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTccccc < 2:565513/149‑1 (MQ=255) aTCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCt > 1:1545610/1‑149 (MQ=255) aTCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCt > 2:4780577/1‑149 (MQ=255) tCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTg > 1:2507242/1‑149 (MQ=255) cGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGaa > 2:3837291/1‑149 (MQ=255) cGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATGTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGaa > 2:870400/1‑149 (MQ=255) gCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACt < 2:1413152/149‑1 (MQ=255) aGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTAttgttg < 1:1947542/149‑1 (MQ=255) gACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTgg < 2:814349/149‑1 (MQ=255) aCAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTACCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGc > 1:2975349/1‑149 (MQ=255) cAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCt > 1:1535865/1‑149 (MQ=255) aaaaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTaa > 1:338553/1‑149 (MQ=255) aaaaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAACAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTaa > 1:2622540/1‑149 (MQ=255) aaaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTaaa > 1:663016/1‑149 (MQ=255) aaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAg > 2:4500513/1‑149 (MQ=255) aaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCACCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAg < 2:1097254/149‑1 (MQ=255) aCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAgg < 1:3833707/149‑1 (MQ=255) ccAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCg > 1:547146/1‑149 (MQ=255) cAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTAGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGc > 2:723081/1‑149 (MQ=255) agagAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCt > 1:193936/1‑149 (MQ=255) aTTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACgg > 1:3980584/1‑149 (MQ=255) aTTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACgg > 1:2449021/1‑149 (MQ=255) ttCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTAGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGt > 1:698355/1‑149 (MQ=255) tCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGtt < 2:4588591/149‑1 (MQ=255) cAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGttt < 2:377796/149‑1 (MQ=255) aGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTg > 2:1491791/1‑149 (MQ=255) aGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTg < 2:1664831/149‑1 (MQ=255) gCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGc > 1:3734357/1‑149 (MQ=255) gCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGc > 1:1130867/1‑149 (MQ=255) gtCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGca > 1:4321490/1‑149 (MQ=255) tCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGcac < 1:1275725/149‑1 (MQ=255) cGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTAGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGcaca < 1:583229/149‑1 (MQ=255) cTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGc < 1:3602492/149‑1 (MQ=255) tATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCg > 2:3057029/1‑149 (MQ=255) tATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCg < 2:3723428/149‑1 (MQ=255) tCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGa < 1:837495/149‑1 (MQ=255) tGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTaa < 1:2191738/149‑1 (MQ=255) ggCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAg > 2:4081166/1‑149 (MQ=255) gcgcATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGc > 2:1393400/1‑149 (MQ=255) gcgcATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTAGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGc < 1:2521447/149‑1 (MQ=255) gcATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTa > 1:4031934/1‑149 (MQ=255) catcatCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTaa > 2:3482823/1‑149 (MQ=255) atcatcAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAAc < 1:873694/149‑1 (MQ=255) catcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACtt < 2:3615088/149‑1 (MQ=255) catcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACtt < 2:4392919/149‑1 (MQ=255) atcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACttt > 1:3479634/1‑149 (MQ=255) atcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACttt < 1:2065887/149‑1 (MQ=255) tcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTc < 2:2465015/149‑1 (MQ=255) caAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCt < 1:3093334/149‑1 (MQ=255) aaGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTg > 1:474075/1‑149 (MQ=255) cAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTc < 1:2340182/149‑1 (MQ=255) cAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTAGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTc > 2:2373233/1‑149 (MQ=255) cAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTAGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTc < 1:2030576/149‑1 (MQ=255) cAGCAACTTTTGCGCGGGCATTTAGTCCCCCCATTTGTTGTAGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTc < 2:4124112/149‑1 (MQ=255) aGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTcc < 1:2427507/149‑1 (MQ=255) gCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCa > 1:3746837/1‑149 (MQ=255) gCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCa > 1:4209117/1‑149 (MQ=255) aCTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTc < 1:3871238/149‑1 (MQ=255) aCTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTc > 2:1627710/1‑149 (MQ=255) aCTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTc > 1:4352716/1‑149 (MQ=255) cgcgGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCt < 1:1836728/149‑1 (MQ=255) gcgGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCtt < 2:2507242/149‑1 (MQ=255) cgGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCttt < 2:2083108/149‑1 (MQ=255) cATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAgg > 2:3129966/1‑149 (MQ=255) aTTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGc < 1:1606946/149‑1 (MQ=255) aTTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGc > 1:945238/1‑149 (MQ=255) tATTCCCCCCATTTGTTGTAGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCAt < 1:3334908/149‑1 (MQ=255) agtCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCAtt < 2:2172435/147‑1 (MQ=255) aTTCCCCCCATTTGGTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCAtt < 2:3354784/149‑1 (MQ=255) tCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTAc < 1:4284333/149‑1 (MQ=255) tCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTAc < 1:2274983/149‑1 (MQ=255) ccccccATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTAcc < 1:3320687/149‑1 (MQ=255) cccccATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACcg < 1:797858/149‑1 (MQ=255) cccccATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACcg > 2:3276942/1‑149 (MQ=255) cccccATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCGAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACcg < 2:1812688/149‑1 (MQ=255) tttGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTg > 1:2592295/1‑149 (MQ=255) ttgttgttgGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGa < 1:1014531/149‑1 (MQ=255) gttgttgGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGAtt < 2:2622540/149‑1 (MQ=255) gttgGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTGCt > 1:1448199/1‑149 (MQ=255) | AGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTGCTTT > CP009273/3813815‑3814110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |