| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,927,097 | G→T | 10.6% | A129A (GCG→GCT) | rbsD → | putative cytoplasmic sugar‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,927,097 | 0 | G | T | 10.6% | 1092.6 / 61.4 | 317 | A129A (GCG→GCT) | rbsD | putative cytoplasmic sugar‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (141/141); new base T (21/14); total (162/155) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 322 total aligned reads displayed.
TCCACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATGGCGCTGGTG > CP009273/3926949‑3927245 | tCCACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCg > 2:2705263/1‑149 (MQ=255) cACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGaa < 1:4133106/149‑1 (MQ=255) aaaCGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCTAATATc > 1:1267201/1‑149 (MQ=255) aaaCGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCTAATATc > 2:4587647/1‑149 (MQ=255) aaaCGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATc > 1:2857080/1‑149 (MQ=255) aaCGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCa > 2:775729/1‑149 (MQ=255) cGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCAtt < 2:3272327/149‑1 (MQ=255) ttGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATtct > 2:297638/1‑149 (MQ=255) tGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATtctc < 1:1084694/149‑1 (MQ=255) gCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTctct > 2:907394/1‑149 (MQ=255) ctcactcaCCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCtg < 1:4642547/149‑1 (MQ=255) tcactcacCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCtgt < 2:1779560/149‑1 (MQ=255) actcacCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGc > 2:1459517/1‑149 (MQ=255) tcacCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTg > 1:375404/1‑149 (MQ=255) ccTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCTAATATCATTCTCTGTGCTGGCg > 2:3599800/1‑149 (MQ=255) ccTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCg > 2:2009257/1‑149 (MQ=255) ttGAGCAGCTGCAAAAACACCAGTGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGTAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTg < 2:1698339/149‑1 (MQ=255) cagcTGCACAACCACCAGGGAAAGACCATTGAAATTCGGTCCACCACGCATGACCAATTCACACCACCAACCGCAGAAAGTCAGGCGGTAATGCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGtt < 2:4307438/149‑1 (MQ=255) agcTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTc > 1:2294068/1‑149 (MQ=255) agcTGCAAAAACACCACGTAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTc < 2:3177416/149‑1 (MQ=255) gcTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCt > 1:21941/1‑149 (MQ=255) gcTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCt > 1:3054067/1‑149 (MQ=255) tGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGa > 2:4353455/1‑149 (MQ=255) gCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAg > 1:4176721/1‑149 (MQ=255) cAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAgg < 2:4460909/149‑1 (MQ=255) aaaaaCACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGc > 2:4251041/1‑149 (MQ=255) aaaaaCACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGc < 2:3064825/149‑1 (MQ=255) aaaaaCACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGc < 1:2583474/149‑1 (MQ=255) aaaCACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCg > 2:1564616/1‑149 (MQ=255) aaaCACCAGGGAAATACCATTGAAATTCGGTACACCACGCATGAACAATTCAAACAACCAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCg < 2:2477709/149‑1 (MQ=255) acacCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTc < 1:439660/149‑1 (MQ=255) cacCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCa < 2:3385690/149‑1 (MQ=255) ccAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATg > 2:3766600/1‑149 (MQ=255) ccAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATg < 2:110329/149‑1 (MQ=255) gggAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGaa < 2:1363516/149‑1 (MQ=255) gAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGc > 2:2805306/1‑149 (MQ=255) aaaTACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCa < 1:1579245/149‑1 (MQ=255) aaTACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCAt < 1:287553/149‑1 (MQ=255) tACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTa > 1:4404649/1‑149 (MQ=255) ccATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACt > 2:923587/1‑149 (MQ=255) cATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACtt > 2:2851359/1‑149 (MQ=255) cATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACtt > 1:343904/1‑149 (MQ=255) cATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACtt > 2:3081682/1‑149 (MQ=255) cATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACtt > 1:705108/1‑149 (MQ=255) aTTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTc < 1:3144387/149‑1 (MQ=255) gAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGc > 1:1305342/1‑149 (MQ=255) gAAATTCGTTACACCACGCAAGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGc < 2:4019798/149‑1 (MQ=255) aaTTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCTAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCtt > 1:121273/1‑149 (MQ=255) aTTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTATGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTa > 1:3331343/1‑149 (MQ=255) ttCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTaa > 2:944149/1‑149 (MQ=255) ttCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTaa > 1:225155/1‑149 (MQ=255) ttCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTaa > 1:1684598/1‑149 (MQ=255) cGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAg < 1:871806/149‑1 (MQ=255) ttACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGc > 2:3412247/1‑149 (MQ=255) ttACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGc > 2:1012362/1‑149 (MQ=255) ttACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGc < 1:4474019/149‑1 (MQ=255) tACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTCAAGGCa > 2:2660265/1‑149 (MQ=255) tACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCa > 1:3682945/1‑149 (MQ=255) acacCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCAt > 1:3250122/1‑149 (MQ=255) ccacGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGa < 1:1426612/149‑1 (MQ=255) ccacGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGa > 2:4192905/1‑149 (MQ=255) acGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATa > 1:4314494/1‑149 (MQ=255) cATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAg < 1:665118/149‑1 (MQ=255) tGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGcc > 2:67732/1‑149 (MQ=255) gAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCt < 1:2112845/149‑1 (MQ=255) aCAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTc < 1:1829555/149‑1 (MQ=255) aaTTCAAACCACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTccc < 2:4440440/149‑1 (MQ=255) aaTTCAAACAACAAACCACAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTccc < 1:4260196/149‑1 (MQ=255) aTTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCTAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCg > 2:4656601/1‑149 (MQ=255) aTTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCg < 2:2294068/149‑1 (MQ=255) ttCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCgg > 1:1014385/1‑149 (MQ=255) acaaACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTaaaa > 2:2100195/1‑149 (MQ=255) aaaCCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGc > 1:2736206/1‑149 (MQ=255) cGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCctc < 1:30337/149‑1 (MQ=255) cAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCTAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCtctc > 2:1849060/1‑149 (MQ=255) gAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCgg > 1:2645115/1‑149 (MQ=255) aaGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGgc < 2:3974659/149‑1 (MQ=255) aGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCTAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGc > 2:1338514/1‑149 (MQ=255) gCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGt < 1:1646657/149‑1 (MQ=255) gTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTaa > 1:2370562/1‑149 (MQ=255) gTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTaa > 2:2533729/1‑149 (MQ=255) aaTTCGCAGCGGAGAATGTTCTCCGTATGCTAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAAt < 2:1267201/149‑1 (MQ=255) ttCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGt > 2:894280/1‑149 (MQ=255) tCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTc < 2:4156528/149‑1 (MQ=255) aGCGGAGAATGTTCTCCGTATGCTAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATc < 1:2258133/149‑1 (MQ=255) aGCGGAGAATGTTCTCCGTATGCTAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATc < 1:2468502/149‑1 (MQ=255) gCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATcc > 1:2050444/1‑149 (MQ=255) gCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATcc > 2:3433084/1‑149 (MQ=255) gCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATcc > 1:1615025/1‑149 (MQ=255) ggAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCgg > 2:61146/1‑149 (MQ=255) agaATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGc > 2:477052/1‑149 (MQ=255) ttCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTg < 1:3484670/149‑1 (MQ=255) tcCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATg < 2:3860171/149‑1 (MQ=255) tcCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATg < 2:1646378/149‑1 (MQ=255) ccGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATgg < 2:4424814/149‑1 (MQ=255) tATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATGgcgc > 2:1395522/1‑149 (MQ=255) tGCTAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATGGCGCtg < 1:3599800/149‑1 (MQ=255) tGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATGGCGCtg > 1:3911951/1‑149 (MQ=255) gCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATGGCGCtgg < 1:1711769/149‑1 (MQ=255) gAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATGGCGCtggtg < 2:1776185/149‑1 (MQ=255) | TCCACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGGCGTGACGTTCTGAGGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGTTAAATGTCTATCCGGGCCGCGTGATGGCGCTGGTG > CP009273/3926949‑3927245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |