| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,980,852 | G→T | 11.8% | R131S (CGT→AGT) | hemY ← | putative protoheme IX synthesis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,980,852 | 0 | G | T | 11.8% | 1118.7 / 76.3 | 333 | R131S (CGT→AGT) | hemY | putative protoheme IX synthesis protein |
| Reads supporting (aligned to +/- strand): ref base G (124/169); new base T (16/24); total (140/193) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 358 total aligned reads displayed.
AGCAGCTTATCCACGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGCACGGCGA > CP009273/3980704‑3981000 | gcagcTTATCCACGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACgt < 1:3684259/149‑1 (MQ=255) gcTTATCCACGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACgttgt < 2:4626370/149‑1 (MQ=255) gcTTATCCACGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACgttgt < 2:3102060/149‑1 (MQ=255) cTTATCCACGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACgttgtt < 1:2739900/149‑1 (MQ=255) tATCCACGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGGTGTTgc > 2:780956/1‑149 (MQ=255) tCCACGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTgcgc > 1:3777074/1‑149 (MQ=255) aCGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGc < 2:2421058/149‑1 (MQ=255) cGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCt < 2:3910823/149‑1 (MQ=255) tGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGc < 2:1924323/149‑1 (MQ=255) tGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGc < 2:3892378/149‑1 (MQ=255) ggCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCa < 2:2415260/149‑1 (MQ=255) gCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAg > 2:3822358/1‑149 (MQ=255) cGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGc < 1:613542/149‑1 (MQ=255) gTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGcc > 2:2687336/1‑149 (MQ=255) gcagcaTGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAg > 2:286896/1‑149 (MQ=255) gcagcaTGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAg < 2:261904/149‑1 (MQ=255) cagcaTGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGt < 2:3816686/149‑1 (MQ=255) agcaTGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTa < 2:2793932/149‑1 (MQ=255) caTGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGa > 1:26485/1‑149 (MQ=255) tGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATa > 1:3852168/1‑149 (MQ=255) ggTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAg > 2:4540034/1‑149 (MQ=255) gTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGt > 1:35051/1‑149 (MQ=255) ttttCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGtt < 2:400226/149‑1 (MQ=255) tCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTcac < 2:3533365/149‑1 (MQ=255) ttACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTcaccac > 1:4164052/1‑149 (MQ=255) tACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCaccacc > 2:3400/1‑149 (MQ=255) tACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCaccacc < 1:3182351/149‑1 (MQ=255) tACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCaccacc < 1:4252567/149‑1 (MQ=255) gggCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGgt > 1:3743836/1‑149 (MQ=255) ggCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGgtt < 1:2973653/149‑1 (MQ=255) ggCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGgtt > 1:3871362/1‑149 (MQ=255) gCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGgttg > 2:209911/1‑149 (MQ=255) ccAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGgttgt < 2:1390533/149‑1 (MQ=255) ccAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGgttgt < 1:2539462/149‑1 (MQ=255) gTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTcc > 2:3753309/1‑149 (MQ=255) ttGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCcg > 2:4405743/1‑149 (MQ=255) ttGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCcg > 2:3995575/1‑149 (MQ=255) ttGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCcg > 2:2014071/1‑149 (MQ=255) tGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCcgc < 1:1799410/149‑1 (MQ=255) gCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCcgcg < 2:4195516/149‑1 (MQ=255) cAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGt > 1:2877289/1‑149 (MQ=255) gACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGa > 1:4492473/1‑149 (MQ=255) gACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGa > 2:2820221/1‑149 (MQ=255) gACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGa > 2:1302369/1‑149 (MQ=255) aCGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGAt < 1:3822352/149‑1 (MQ=255) gTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTACGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCg > 2:2207111/1‑149 (MQ=255) gggTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCAttt > 2:4155748/1‑149 (MQ=255) ggTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCAtttt < 1:1954126/149‑1 (MQ=255) gTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCAttttt > 1:3104248/1‑149 (MQ=255) gTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCAttttt > 1:711813/1‑149 (MQ=255) tttCTACCCGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGcc > 2:2151685/1‑149 (MQ=255) cTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATc < 2:1446609/149‑1 (MQ=255) tACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCa < 2:2293262/149‑1 (MQ=255) aCCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAg > 1:3609427/1‑149 (MQ=255) ggAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCtt > 2:3020932/1‑149 (MQ=255) gAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCttt < 2:1521237/149‑1 (MQ=255) aTGGTGTCGTTGCCGGCCAGCTCCGCTGCGGGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTc < 2:2221662/149‑1 (MQ=255) aTGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTc < 1:4139668/149‑1 (MQ=255) aTGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTc < 2:1561910/149‑1 (MQ=255) gtgtCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGTTGTTGGTTGGCGCGTGCTTCATCACCACTTTGGTGCGCTGCTTGGGCAGCCAGTAGATAGTTCTCAACCGGTTGTTCCGCGTGATCTGCATTTTTAGCCATCAGCTTTTCAAc < 1:532404/149‑1 (MQ=255) cGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGc < 1:4527310/149‑1 (MQ=255) cGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGc < 2:4560167/149‑1 (MQ=255) tGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGa < 1:766777/149‑1 (MQ=255) gCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGAt < 1:1164092/149‑1 (MQ=255) gCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATc > 2:2515145/1‑149 (MQ=255) cAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGc < 2:3229387/149‑1 (MQ=255) gCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCt > 2:441462/1‑149 (MQ=255) gCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGc > 2:628812/1‑149 (MQ=255) tGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCa < 1:4048898/149‑1 (MQ=255) tGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCa < 1:3899658/149‑1 (MQ=255) cgcgTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGt < 2:3639176/149‑1 (MQ=255) gTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTc > 1:949529/1‑149 (MQ=255) gTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTc < 1:1295824/149‑1 (MQ=255) gTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTc < 1:1501675/149‑1 (MQ=255) gTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTc < 1:3057161/149‑1 (MQ=255) cAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTcagca > 2:4515742/1‑149 (MQ=255) aGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTcagcag < 1:4546232/149‑1 (MQ=255) aTGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAgcg > 1:3941717/1‑149 (MQ=255) gttggttgGCGCGTGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGcc < 1:3237959/149‑1 (MQ=255) gttggttgGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGcc < 1:2853892/149‑1 (MQ=255) ttggttggCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCt > 1:2013119/1‑149 (MQ=255) ggttggCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGt < 1:1461474/149‑1 (MQ=255) gttggCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGtt < 2:4662804/149‑1 (MQ=255) gttggCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGtt < 1:4673578/149‑1 (MQ=255) gttggCGCGTGCTTCATCACCACGTGGTTGCGCTGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGtt < 2:4061542/149‑1 (MQ=255) tggCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCg < 1:497601/149‑1 (MQ=255) ggCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCgg > 2:2334232/1‑149 (MQ=255) cgcgTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTc < 1:1135947/149‑1 (MQ=255) gcgTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCt > 1:4433055/1‑149 (MQ=255) gcgTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCt < 2:3484404/149‑1 (MQ=255) tGCTTCATCACCACTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCt > 1:3453416/1‑149 (MQ=255) gCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCtt > 2:2118343/1‑149 (MQ=255) catcaCCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGt > 1:2253436/1‑149 (MQ=255) tcaCCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGc > 2:3123978/1‑149 (MQ=255) tcaCCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGc > 1:1865706/1‑149 (MQ=255) caccacGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGCa < 1:336292/149‑1 (MQ=255) accacTTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGCAc < 1:3490050/149‑1 (MQ=255) accacGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGCAc > 1:2374437/1‑149 (MQ=255) acGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGCACGGc < 2:4752465/149‑1 (MQ=255) gttgttGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGCACGGCGa < 2:3284308/149‑1 (MQ=255) | AGCAGCTTATCCACGCCGTGGCGTGCAGCATGGTTTTCATTACGGGCCAGTTGCAGACGTACGCGGGTGATTTCTACCGGAATGGTGTCGTTGCCGGCCAGCTCCGCTGCGCGTTCCAGATGTTGGTTGGCGCGTGCTTCATCACCACGTTGTTGCGCGGCTTCGGCAGCCAGTAGATAGTTCACCACCGGTTGTTCCGCGTGATCGGCATTTTTCGCCATCAGCTTTTCAACTTGCTGATAATCGCCTTCCGCCAGTTTCAGCAGCGCCTGTTCGGTCTGCTTACGTGCACGGCGA > CP009273/3980704‑3981000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |