| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,104,078 | G→T | 11.4% | T108K (ACG→AAG) | fpr ← | ferredoxin‑NADP reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,104,078 | 0 | G | T | 11.4% | 1030.5 / 68.1 | 303 | T108K (ACG→AAG) | fpr | ferredoxin‑NADP reductase |
| Reads supporting (aligned to +/- strand): ref base G (141/127); new base T (20/15); total (161/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 305 total aligned reads displayed.
TTCCTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTAT > CP009273/4103930‑4104225 | ttCCTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCg < 2:1972731/149‑1 (MQ=255) cTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGttt < 2:1808867/149‑1 (MQ=255) cTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGttt < 2:1627216/149‑1 (MQ=255) tGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTc > 2:3212823/1‑149 (MQ=255) cATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGc < 1:203268/149‑1 (MQ=255) aTCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTGTTCGCa > 2:4669723/1‑149 (MQ=255) aTCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCa > 1:558158/1‑149 (MQ=255) aTCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCa > 1:3657868/1‑149 (MQ=255) cAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGt < 1:2122899/149‑1 (MQ=255) cAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGt > 1:2548977/1‑149 (MQ=255) aGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTg > 1:63052/1‑149 (MQ=255) aGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTg < 1:3927159/149‑1 (MQ=255) aaaTAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCAc < 1:2166102/149‑1 (MQ=255) aaaTAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCAc < 1:1193994/149‑1 (MQ=255) aaTAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACt < 1:4671440/149‑1 (MQ=255) tAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTc > 1:2445572/1‑149 (MQ=255) aGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCa > 1:1510781/1‑149 (MQ=255) ttAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCg > 2:65059/1‑149 (MQ=255) ttAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCg > 2:2955370/1‑149 (MQ=255) cggcggCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGcaca < 1:1378253/149‑1 (MQ=255) ggcggcATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACaa < 2:2479573/149‑1 (MQ=255) gcggcATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACaaa < 2:3271801/149‑1 (MQ=255) gcATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGaa > 1:2895072/1‑149 (MQ=255) tAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATcc > 2:3684558/1‑149 (MQ=255) aaCGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCt > 1:1336390/1‑149 (MQ=255) gcggcgTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGc < 1:3250397/149‑1 (MQ=255) gcggcgTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGc > 2:1713535/1‑149 (MQ=255) cggcgTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCt > 2:3074802/1‑149 (MQ=255) ggcgTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCtt < 1:3763587/149‑1 (MQ=255) gTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGc > 2:4443516/1‑149 (MQ=255) gTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGc > 2:462845/1‑149 (MQ=255) gCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTa < 2:2542952/149‑1 (MQ=255) aCCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAac > 1:3127577/1‑149 (MQ=255) ccAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAacc > 2:1429434/1‑149 (MQ=255) ccAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAacc > 1:2358736/1‑149 (MQ=255) aGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAaccac > 2:1732486/1‑149 (MQ=255) ggACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAaccacc < 1:3893478/149‑1 (MQ=255) ggACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAaccacc < 2:3941521/149‑1 (MQ=255) ggACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAaccacc > 2:474464/1‑149 (MQ=255) aCCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTg > 1:1028868/1‑149 (MQ=255) cAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCAAAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCa > 1:1182304/1‑149 (MQ=255) aGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCAc < 2:3174124/149‑1 (MQ=255) aGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCAc < 2:130760/149‑1 (MQ=255) aGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGGACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCAc < 2:2976088/149‑1 (MQ=255) tttttGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTc < 2:2300585/149‑1 (MQ=255) tttttGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTc > 1:1655210/1‑149 (MQ=255) ttGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATc > 2:1224661/1‑149 (MQ=255) aaGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGcc < 2:4467806/149‑1 (MQ=255) aGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCt > 2:3502438/1‑149 (MQ=255) gCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTg < 2:2607611/149‑1 (MQ=255) gATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGt > 1:2478080/1‑149 (MQ=255) aTCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGtt < 1:2811016/149‑1 (MQ=255) tCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGttt < 2:2084809/149‑1 (MQ=255) tCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGttt < 2:4106763/149‑1 (MQ=255) aaaTCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGTATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAg < 2:1060500/149‑1 (MQ=255) cTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTgcc < 1:953999/149‑1 (MQ=255) tttACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTgccg > 1:686784/1‑149 (MQ=255) tttACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTgccg > 2:2755917/1‑149 (MQ=255) tACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTgccgcc > 2:863622/1‑149 (MQ=255) gTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTCCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGt < 2:3547837/149‑1 (MQ=255) gAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCtt > 2:2441060/1‑149 (MQ=255) aaTCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTa > 1:1804727/1‑149 (MQ=255) aTCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTaa > 1:3236770/1‑149 (MQ=255) aTCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTaa > 1:3578586/1‑149 (MQ=255) tCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAAt > 1:433789/1‑149 (MQ=255) tCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTACGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAAt > 1:916203/1‑149 (MQ=255) gATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAAttt > 2:4305845/1‑149 (MQ=255) gATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAAttt > 2:397376/1‑149 (MQ=255) gATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAAttt > 1:2936049/1‑149 (MQ=255) taaataaGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGc > 1:1881940/1‑149 (MQ=255) aataaGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCa > 1:1682812/1‑149 (MQ=255) aataaGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCa < 1:3282442/149‑1 (MQ=255) ataaGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCAt > 2:2655970/1‑149 (MQ=255) aGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCgg < 2:4687129/149‑1 (MQ=255) aGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGACATCgg > 1:488380/1‑149 (MQ=255) gggCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCggg > 2:3818644/1‑149 (MQ=255) gggCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCggg < 2:3574551/149‑1 (MQ=255) gCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGa > 2:2402322/1‑149 (MQ=255) ccAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGAc < 1:4577291/149‑1 (MQ=255) aaTCGCTGTACCGGTTGCCAGCATCCAGAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACGTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACgg < 2:3419358/149‑1 (MQ=255) tCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTg < 2:2220984/149‑1 (MQ=255) tGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCa > 2:833294/1‑149 (MQ=255) tGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCa < 1:1526317/149‑1 (MQ=255) tGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCa > 2:3139766/1‑149 (MQ=255) gTTGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTaaaa < 1:4204606/149‑1 (MQ=255) gTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTaaaa < 1:4484363/149‑1 (MQ=255) ttGCCAGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAAc < 1:2969831/149‑1 (MQ=255) ttGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAAc > 1:1937136/1‑149 (MQ=255) cAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCa > 1:2645274/1‑149 (MQ=255) aGCATCCATAGCTTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAg < 2:4206825/149‑1 (MQ=255) cATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGAt < 2:1110147/149‑1 (MQ=255) aTCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTACAACTCCAGATc > 1:3414676/1‑149 (MQ=255) tCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCg < 2:3276813/149‑1 (MQ=255) ccATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCgg < 1:4075437/149‑1 (MQ=255) ccATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCgg < 2:1155122/149‑1 (MQ=255) ccATAGCGTTTCGCAGTGCGGCACTTCATCGAGAACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCgg < 2:3839086/149‑1 (MQ=255) aGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGAtt < 1:4443516/149‑1 (MQ=255) aGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGAtt < 1:691249/149‑1 (MQ=255) aGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGAtt > 1:3075831/1‑149 (MQ=255) gCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTa < 1:2620848/149‑1 (MQ=255) | TTCCTGCATCAGTGGCAAATAGCTTAAGTCGGCGGCATAACGTGCGGCGTGCACCAGGACCAGATTTTTGAAGCGATCTAAATCTTTACCTAGTTGCAGAATCGATAAATAAGGGCCAATCGCTGTACCGGTTGCCAGCATCCATAGCGTTTCGCAGTGCGGCACTTCATCGAGCACAAAGAATCCTGCCGCTTCGCTAACCACCTGCACTTCATCGCCTGGTTTCAGTGCCGCCAGTCGTGGGCTTAATTTGCCATCGGGGACGGTGACCAGGTAAAACTCCAGATCGGGATTAT > CP009273/4103930‑4104225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |