| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,181 | G→C | 7.7% | intergenic (‑115/+480) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,181 | 0 | G | C | 7.7% | 595.7 / 6.2 | 204 | intergenic (‑115/+480) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (52/134); new base C (10/8); total (62/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.83e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 220 total aligned reads displayed.
TACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACG > CP009273/360033‑360325 | tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCACTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCGCAAC‑GTGCAAATCCGCGCCcg > 2:3533708/1‑149 (MQ=37) aacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattTATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCGCTAC‑GTTCAAATCCGCTCCcggc < 2:2696411‑M1/80‑1 (MQ=255) caacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCATGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCGcggcgg < 2:274263‑M1/82‑1 (MQ=255) caacagataaaacgaaaggcccagtctttcgactgagcctttcgttttagttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCcggcgg < 1:4351098‑M1/82‑1 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGa < 2:3032783/149‑1 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAAC‑GTTCAAATCCGCACCcggcggc > 1:4381440/1‑148 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGAt < 2:767952/149‑1 (MQ=255) acagataaaacgaaaggcccagtctttcgactgagcctttcgtgtgatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCGCAAC‑GGTCCAATCCGCGcccggcggct < 2:4412122‑M1/84‑3 (MQ=255) cagataaaacgaccggccccgtctttcgactgagcctattgttttttttgatgcgtgggtaattAATTCCTGTATGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGAtt > 1:67071‑M1/65‑149 (MQ=255) aGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGAttt > 1:2538986/1‑149 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACCTGAGAATTCCGATCCCCCATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTc < 2:2517679/149‑1 (MQ=255) ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:2360267/149‑1 (MQ=255) caccaTCCAGTGCAGGCGCTCCGATTATAAGCTGTCAAAATTGAGAATTCCGATCCCAAATGCCTGGCTGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCt < 1:167309/149‑1 (MQ=18) aacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTa < 2:3846510‑M1/92‑1 (MQ=255) acgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCTCTCCCGGGGGCTTTGTCCTAc < 1:1302424‑M1/93‑1 (MQ=255) acgaaaggcccagtctttcgactgagcctttcgttgtatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCGTCGCAAC‑GTTCAAATCCGCTCCCGGCGGAGGTGTCCTAc < 2:788832‑M1/93‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCTGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACt < 1:2739514/149‑1 (MQ=255) gaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAAC‑GTTCAAATCCGCTCCCGGCGGAGTTGGCCTACTc < 2:484454‑M1/95‑1 (MQ=255) acctgggCAGGAGCTCCGATTATAAGCTGACAAAAATTACAATTCCGACCCCCACTTCCTGGCAGTTTTTGGGGGGCGTCGTGCCCCCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCa < 1:2816468/143‑1 (MQ=17) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAg < 2:1495115/149‑1 (MQ=255) tGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgaga < 2:2934794/149‑1 (MQ=255) ccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGagag < 2:1016148‑M1/102‑1 (MQ=255) cAGGAGCTCCGATGAGAAGCTGTCAAACATGTGACTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGc < 2:4524250/149‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt < 1:326007/149‑1 (MQ=255) tctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGCGAGCGtt < 2:2826236‑M1/106‑1 (MQ=255) tctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt > 1:3846510‑M1/44‑149 (MQ=255) gAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt > 2:2293967/1‑149 (MQ=255) gAGCTCCGATGAGAAGCTGTCAACCATGAGACTTCCGAGCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt < 2:4678573/149‑1 (MQ=255) ctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGTCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCCGGAGAGCGTTc < 2:484755‑M1/107‑1 (MQ=255) ctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGTCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGCTATGTCATACTCAGGAGagcgatc < 2:1598599‑M1/107‑4 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTTCTTAGCAAC‑GTTCAAATACGCTCCCGGCGGATTTGTACTACTGAGGAGAACGtta > 1:3102378/1‑148 (MQ=21) tttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCa > 2:2722865‑M1/42‑149 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCACC‑GGGCAAATCCGCGCCCCGCGGCTTTGTCCTACTCAGGAGAGCGtgag > 1:881977/1‑146 (MQ=18) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑CGTAAAATCCGCAACCCGCCGCTTTGTCCAACTCAGGTGAGCCTTCACCGa > 1:4094301/1‑149 (MQ=18) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGac < 1:2618312/149‑1 (MQ=255) actgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAAC‑GGTCAAAACCCCTCCCCGCGGATTTTTCCAACACAGGCTAGCGTTAAccgcc < 1:4704755‑M1/113‑3 (MQ=255) tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATACGCTCCCGGCGGATTTGTACAACTCAGGAGAGCGTTCACCGacaa < 2:1804288‑M1/115‑1 (MQ=255) gagcctttcgatctacatgatgcccggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCATCCGGTCCGTTGCTTAGCAAC‑TATCAAATCCGCTCACGTCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa > 2:3530260‑M1/34‑149 (MQ=255) atAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaac < 2:2018676/149‑1 (MQ=255) atAAGCTGTCAAACATGAGAATTCCGATCCCCAATGCCTGGCAGTTTCTGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaac < 2:2756262/149‑1 (MQ=255) agcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaac < 2:4263171‑M1/117‑1 (MQ=255) aGCTGTCAAACATGAGAATTCCGATCCCCAATGCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAaacaac < 2:4104528/149‑1 (MQ=255) tttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAacaaca > 2:3458560‑M1/29‑149 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAacaaca < 2:4427911/149‑1 (MQ=255) tGTCAAACATGAGAAGTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGa < 1:1862134/149‑1 (MQ=255) aaaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaa < 2:4134254/149‑1 (MQ=255) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa < 2:1890509/149‑1 (MQ=255) tatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAc < 2:519941‑M1/129‑1 (MQ=255) atttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCAAC‑GTTCAAAAACCCAACCGGCGGATTTGTCCTACACAGGAGATCGTTCACCCCCAAACAAAAGataaaaac < 1:4641480‑M1/130‑3 (MQ=255) atttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACACAGGAGAGCGTTCACCGACAAACAACAAATAAAACg < 1:1137990‑M1/130‑1 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa < 2:850524/149‑1 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAAA‑CTTCAAATACGCTCCCCGCGGATTTTTCCGACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAAGaa > 1:1020639/1‑149 (MQ=14) tGAGAATTCCGATCCCCAAGTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa < 2:2880206/149‑1 (MQ=255) gagaATTCCGATCCCCATTTCGTGGCTGTTTTTGGCGGGGGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaaa < 1:1786042/149‑1 (MQ=14) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTGGCAACGGTGCAAACCCCGCCCCGCCGCATTT‑TCCGAAACAGGGGAGCGGTCACCGAACCACAACAGCTaaaaacaaaa > 1:883186/1‑143 (MQ=9) aTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGcc > 2:3504501/1‑149 (MQ=255) ttCCGATCCCGAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc < 2:2538986/149‑1 (MQ=255) ctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCa < 2:1173793‑M1/139‑1 (MQ=255) ctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCa < 2:4663357‑M1/139‑1 (MQ=255) cctaTCCCAAATTCGTGGCTGTTTTGGGCGGGGGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGTATTTGTCCTACTCAGGTGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAg < 1:1757393/146‑1 (MQ=11) ccGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAg > 2:86147/1‑149 (MQ=40) cGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTTTCCTACTCAGGAGAGCGTGCCCCGACAAACAACAGATAAAACGTAAGGCCCAGt > 2:2280625/1‑149 (MQ=255) ggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTACCGGCGGATTTTTCCTACACAGGAGAGCGTTCACCGACAAACAACAGATAAAACCAAATGCCCAGTCt < 1:3162039‑M1/143‑1 (MQ=255) aTCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 2:3590867/149‑1 (MQ=38) gaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAAC‑GTTCAAATACCCTCCCGGCGGATTTTTCCTACTCAGGCGAGCGTTCACCCACAAACAACACATAAAAACAAATGGCCACTCtt < 1:3835019‑M1/144‑1 (MQ=255) aattAATTCCTGGCAGTTTCTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt > 1:788832‑M1/5‑149 (MQ=255) ttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCg > 1:3528965‑M1/3‑113 (MQ=255) ttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACAACAGATAAAACGAAAGGCCCAGTCTTTCg < 2:3951133‑M1/147‑1 (MQ=255) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTGGCAAC‑CTTAAAATACGCACCCGGCGGATTTTTACTACACAGGAGAGCGTTCACCGACCAAAAACAGAAAAAAACAAAGGCCCCCTCTTTCg > 1:268401/1‑149 (MQ=11) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAAA‑GTTCAAATCCGCTCCCGGCGGATTTGTACGAATCAGGAGAGCGTTGACCGACAAACAACAGATAAAACGAAAGGCCCCGTCgtttg > 1:1179310/1‑147 (MQ=11) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTCGCAAC‑GTTCAAATACGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAATGCCCCGTCTTTCGAc > 1:1550023/1‑149 (MQ=11) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATACGCTCCCGGGGGATTTGTCCGACTCAGGAGAGCGTTCACCGGCAAACAACAGATAAAACGAAAGGCCCAGTGTTTGGAc > 2:2107195/1‑149 (MQ=11) aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 2:309379/149‑1 (MQ=32) tCCTGGCATTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:124110/149‑1 (MQ=11) tCCTGGCAGTTTATGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:4774920/149‑1 (MQ=11) gCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:4738670/149‑1 (MQ=11) gCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:484676/149‑1 (MQ=11) cGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCGACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 2:1206818/149‑1 (MQ=17) cGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTGCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 2:1918684/149‑1 (MQ=17) gCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:2940403/149‑1 (MQ=33) gCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:2100977/149‑1 (MQ=33) ccACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACACACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt < 2:1958703/149‑1 (MQ=21) ccACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt < 1:765286/149‑1 (MQ=34) ccACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt < 2:2463399/149‑1 (MQ=34) ccACCCTCCGGGCCGTTGCGTAGCAAC‑GTTCAAATCCGCGCCCGGCGGATTTGTCCTACTCAGGCGGGCGGTCACCCCCACACAACAGATAAAACGAAAGGCCCACTCTTTCGACGGTGCCGGTCGGGGTGTTTGATGCCTgggggtgg > 2:2898756/1‑145 (MQ=2) aCCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATGTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGCTAAAACGACAGGCCCAGTCTTTCGTCTGAGCCGTTCGTTTTTTTTGCTGCGTGggggattgg > 2:2616023/1‑149 (MQ=11) aCCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATACGCAACCGGCGGATTTGTCCTACACAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCACTCTGTCGACTGAGCCGGTCGTTGTATTTGATGCCTGgggaattgg > 2:1305550/1‑149 (MQ=11) cccTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattttt > 2:678469/1‑146 (MQ=21) cTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattg > 2:2781088/1‑145 (MQ=35) gTTGCTTCGCAAC‑TTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCtt < 1:2004893/149‑1 (MQ=255) gTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCCCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGGTTTCTTTGATGCCGGGGGACTTGGGAATTAAGTCtt > 2:2578369/1‑149 (MQ=14) gCTTCGCAAC‑GTTCAACTCCGCTCCCGGCGGATTTGTCCTACTCCGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGaa < 1:2227489/149‑1 (MQ=255) aaC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa < 1:93457/149‑1 (MQ=255) aaC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTGTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa > 2:194937/1‑149 (MQ=255) aC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAg > 1:3572154/1‑149 (MQ=255) c‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaa < 1:2373103/121‑1 (MQ=33) cGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCCCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAt < 1:2445230/149‑1 (MQ=255) cGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACCGATAAAACGACAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAATTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAt < 2:1378236/149‑1 (MQ=255) gCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATa > 2:4551927/1‑149 (MQ=255) tCCCGGCGGAGTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCGTTCGTTTTATTTGCTGCCTGGGGACTTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACg > 1:588535/1‑149 (MQ=255) | TACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACG > CP009273/360033‑360325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |