| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,342,293 | C→A | 8.9% | intergenic (+119/‑108) | yjdJ → / → yjdK | putative acyl‑CoA transferase/uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,342,293 | 0 | C | A | 8.9% | 1018.4 / 45.1 | 279 | intergenic (+119/‑108) | yjdJ/yjdK | putative acyl‑CoA transferase/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base C (104/150); new base A (13/12); total (117/162) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 287 total aligned reads displayed.
ACGCGGGAGTATGATGATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTT > CP009273/4342145‑4342441 | aCGCGGGAGTATGATGATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTc < 1:1133702/149‑1 (MQ=255)aCGCGGGAGTATGATGATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTc < 2:1793243/149‑1 (MQ=255) ggAGTATGATGATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTAATccc > 2:1872747/1‑149 (MQ=255) gAGTATGATGATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCTGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATcccc < 2:798472/149‑1 (MQ=255) ggatgatgATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCtt < 1:1441419/147‑1 (MQ=255) tctgatgaTATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTACTCCCCttt > 2:579627/3‑149 (MQ=255) tATGATGATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCttt > 2:3698326/1‑149 (MQ=255) tgatgaTATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTAc < 1:2758190/149‑1 (MQ=255) tgatgaTATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTAc > 1:2285847/1‑149 (MQ=255) tgatgaTATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTAc < 1:1837835/149‑1 (MQ=255) tgatgaTATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTAc > 2:396860/1‑149 (MQ=255) gatATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAg < 1:1369608/149‑1 (MQ=255) cGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑aaaaa > 1:2663326/1‑149 (MQ=255) gCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑aaaaaa > 2:1143678/1‑149 (MQ=255) gCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTAATCCCCTTTACTGAGC‑aaaaaa > 2:4453862/1‑149 (MQ=255) ttttGGTAGAGTACATAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGTTAGGGGCATGCACAAATAATGGGAAGTGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGaa < 1:1870359/146‑1 (MQ=255) gATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAat > 2:2211368/1‑149 (MQ=255) gggAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATAtc > 2:2693299/1‑149 (MQ=255) gagaGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATAtctc < 1:2239375/149‑1 (MQ=255) gagaGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATAtctc < 1:886678/149‑1 (MQ=255) gagTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCt < 1:4404774/149‑1 (MQ=255) gTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCtat < 2:2394736/149‑1 (MQ=255) gTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCtat < 2:2655685/149‑1 (MQ=255) gTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCtat < 1:4107947/149‑1 (MQ=255) cAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATg > 2:1284112/1‑149 (MQ=255) gagTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACACAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATgag > 2:4537310/1‑149 (MQ=255) gagTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAAGAATATCTCCTATATga < 2:29234/149‑1 (MQ=255) gTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGaa < 1:306665/149‑1 (MQ=255) gTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGaa < 1:3251375/149‑1 (MQ=255) taaagATATTTTTCATTCTCTCCGCGATTTGATGCAGGAGAGCATCTGAAGTGTAGGTGGTTGCACAAAGAATGGGCAGAGAGCGCTTTTTTTTGTACCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAat < 2:1221000/145‑1 (MQ=255) cACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTAATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAatc < 2:4720048/149‑1 (MQ=255) aCGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAatca < 1:4624300/149‑1 (MQ=255) cGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTAATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAatcat > 1:4524240/1‑149 (MQ=255) tatTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCaa < 1:695976/149‑1 (MQ=255) atTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAAt < 1:2961005/149‑1 (MQ=255) tttttCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGGAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATc < 1:833256/149‑1 (MQ=255) ttttCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCg < 2:3366922/149‑1 (MQ=255) ttttCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCg > 1:2391227/1‑149 (MQ=255) ttCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTAATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCggg > 1:4161098/1‑149 (MQ=255) cATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGt > 1:927305/1‑149 (MQ=255) aTTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGtt < 1:3738861/149‑1 (MQ=255) ctctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTtaat < 2:486867/149‑1 (MQ=255) ctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTtaataa < 1:4080266/149‑1 (MQ=255) ccGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGt > 2:3288298/1‑149 (MQ=255) gcgATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGttt < 1:2066433/149‑1 (MQ=255) gcgATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGttt < 1:2466492/149‑1 (MQ=255) aTGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGc > 1:1815675/1‑149 (MQ=255) gtgATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGt < 2:639082/149‑1 (MQ=255) tgATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTc > 2:1123089/1‑149 (MQ=255) gATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTcc < 2:3390578/149‑1 (MQ=255) gATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTcc < 2:2494824/149‑1 (MQ=255) tGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTcccc < 1:977777/149‑1 (MQ=255) aGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCaga < 1:2691257/149‑1 (MQ=255) ggAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCagag > 2:725727/1‑149 (MQ=255) ggAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCagag > 1:1632821/1‑149 (MQ=255) gagaGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGc > 2:1559803/1‑149 (MQ=255) gagCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGACTCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGt > 2:4090717/1‑149 (MQ=255) aTCTGACGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTaa < 1:4672293/149‑1 (MQ=255) tCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAat > 1:2100721/1‑149 (MQ=255) tCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAat > 1:3540359/1‑149 (MQ=255) tCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAat < 1:4781513/149‑1 (MQ=255) gAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATAtt > 1:1724717/1‑149 (MQ=255) ggTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATa < 2:1694583/149‑1 (MQ=255) gTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAg < 1:1104391/149‑1 (MQ=255) tAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAgg < 2:3110190/149‑1 (MQ=255) tAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAgg < 2:1467260/149‑1 (MQ=255) aGGGGGATGCACAAAGACTGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTAATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGa < 2:3897674/149‑1 (MQ=255) aGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGa < 2:590632/149‑1 (MQ=255) aGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTAATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGa < 2:2273667/149‑1 (MQ=255) ggggATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGt < 2:2509760/149‑1 (MQ=255) ggggATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGt < 2:3792737/149‑1 (MQ=255) ggATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCa < 2:3371388/149‑1 (MQ=255) ggATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCa < 2:849927/149‑1 (MQ=255) gATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCat < 2:3259028/149‑1 (MQ=255) aTGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCata < 1:3466037/149‑1 (MQ=255) aTGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCata < 2:4486451/149‑1 (MQ=255) aTGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCata < 2:675126/149‑1 (MQ=255) gCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATCAGTTTTGCGTCCCCAGAGCGGTTAATATTGATAGGAGTCAtatt > 2:3500962/1‑149 (MQ=255) gCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCAtatt > 2:1111106/1‑149 (MQ=255) gCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCAtatt > 2:1111037/1‑149 (MQ=255) acaAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCAtattat > 2:4510039/1‑149 (MQ=255) aaaGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATgg > 1:4739986/1‑149 (MQ=255) gAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAg < 1:2451273/149‑1 (MQ=255) gAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTAATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCCTATTATGGAAg > 1:1672170/1‑149 (MQ=255) gagagCGCGTTTTTTTGTCCCAAGTAATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACa > 2:3568986/1‑149 (MQ=255) agagCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACaa < 2:1839308/149‑1 (MQ=255) gTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAAt < 2:3998417/149‑1 (MQ=255) tttttttGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATa > 2:413620/1‑149 (MQ=255) tttttttGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATa > 2:3057913/1‑149 (MQ=255) ttttttGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATAc < 1:3779293/149‑1 (MQ=255) ttttGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGAGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACtt < 2:3923740/149‑1 (MQ=255) tCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTAtgtt < 2:1981661/149‑1 (MQ=255) ccAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTAtgttgt < 1:1921785/149‑1 (MQ=255) ccAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTAtgttgt < 2:2360866/149‑1 (MQ=255) cAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATgttgtt < 2:2860541/149‑1 (MQ=255) gTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCt < 1:3410939/149‑1 (MQ=255) gTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCt < 1:4256608/149‑1 (MQ=255) tCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCtt > 1:521185/1‑149 (MQ=255) cATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCttt > 2:4264788/1‑149 (MQ=255) cATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCttt > 1:4044459/1‑149 (MQ=255) | ACGCGGGAGTATGATGATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTT > CP009273/4342145‑4342441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |