| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,434,260 | C→A | 86.8% | P111H (CCT→CAT) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,434,260 | 0 | C | A | 86.8% | 755.8 / 119.0 | 309 | P111H (CCT→CAT) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| Reads supporting (aligned to +/- strand): ref base C (21/20); new base A (125/143); total (146/163) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Only 100 of 317 total aligned reads displayed.
ACGTTCGTTATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCTCC > CP009273/4434113‑4434405 | ttcgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGcatcct > 2:3426184/1‑149 (MQ=255) ttcgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGcatcct > 2:3903586/1‑149 (MQ=255) cgttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTc < 2:2741705/149‑1 (MQ=255) gttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCt < 2:4779278/149‑1 (MQ=255) gttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCt < 2:1802908/149‑1 (MQ=255) gttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCt < 2:159101/149‑1 (MQ=255) ttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTg > 2:4474169/1‑149 (MQ=255) ttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTg < 1:3804566/149‑1 (MQ=255) ttATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGGGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTg > 2:3455151/1‑149 (MQ=255) tGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAAc < 2:2579548/149‑1 (MQ=255) agcagcCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAg < 1:1132521/149‑1 (MQ=255) gcagcCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCGGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACAGTCAGGTCAACCTCGACAGTAAAAAAATGCATCCTTCTGAACAgg < 2:25348/149‑1 (MQ=255) gcCAGGCGTGTCGTTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGATGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTg < 1:4683597/149‑1 (MQ=255) gcCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTg > 2:1300615/1‑149 (MQ=255) gcCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTg > 2:3449767/1‑149 (MQ=255) gcCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTg < 1:1164518/149‑1 (MQ=255) gcCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTg > 2:3054495/1‑149 (MQ=255) ccAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTga > 1:2952709/1‑149 (MQ=255) cAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTgaa < 1:300302/149‑1 (MQ=255) tGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAagag < 2:1092889/149‑1 (MQ=255) ggCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAgg < 1:2193041/149‑1 (MQ=255) gTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGa < 1:3979487/149‑1 (MQ=255) gTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGa < 1:3882129/149‑1 (MQ=255) tAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGAt < 2:3994023/149‑1 (MQ=255) tAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGAt < 2:3099854/149‑1 (MQ=255) aaGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGc < 1:2677879/149‑1 (MQ=255) aaGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGc < 1:2519589/149‑1 (MQ=255) cAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGc < 1:591989/149‑1 (MQ=255) cAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGc < 2:238626/149‑1 (MQ=255) aaTCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCt > 2:2957694/1‑149 (MQ=255) tCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTgg > 1:1483261/1‑149 (MQ=255) cATCTGGCTGTCGGGCTTGTGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGACAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGAtct < 1:1628097/149‑1 (MQ=255) cATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGAtct > 2:4450693/1‑149 (MQ=255) cTGGCTGTCGGGCTTGAGTGCCTGTGTAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGAtctctc < 2:1552141/149‑1 (MQ=255) ggCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCa < 1:2269009/149‑1 (MQ=255) ggCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCa > 1:894027/1‑149 (MQ=255) ggCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCa > 1:3251219/1‑149 (MQ=255) tGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGc > 1:4183460/1‑149 (MQ=255) tCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCg > 1:4476442/1‑149 (MQ=255) cGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGt < 1:3748378/149‑1 (MQ=255) gggCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTa < 1:2465704/149‑1 (MQ=255) gggCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCGGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTa < 2:3281700/149‑1 (MQ=255) gCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATc > 1:3913002/1‑149 (MQ=255) gCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATc > 1:1523843/1‑149 (MQ=255) gCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATc > 2:3118814/1‑149 (MQ=255) gAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCAt < 2:1436514/149‑1 (MQ=255) gTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCa > 2:223467/1‑149 (MQ=255) ccTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCAccc > 1:4326404/1‑149 (MQ=255) ccTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCAccc > 2:4703956/1‑149 (MQ=255) ccTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCAccc > 2:2874459/1‑149 (MQ=255) cagcagTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACggg > 2:853243/1‑149 (MQ=255) cagcagTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACggg > 1:1760947/1‑149 (MQ=255) cagcagTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACggg > 1:3104039/1‑149 (MQ=255) agcagTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGt < 2:2633676/149‑1 (MQ=255) agTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGc > 1:2426181/1‑149 (MQ=255) agTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGc < 2:2261112/149‑1 (MQ=255) gtgtTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCa > 1:1379547/1‑149 (MQ=255) gtgtTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCa > 1:20224/1‑149 (MQ=255) tgtTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCAc < 2:46877/149‑1 (MQ=255) tGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGa < 2:1382430/149‑1 (MQ=255) gTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGAc < 2:3717165/149‑1 (MQ=255) tATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACa > 1:4107948/1‑149 (MQ=255) ttAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCCGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAAc < 2:4293316/149‑1 (MQ=255) tAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACg < 2:3852814/149‑1 (MQ=255) aTGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTc > 1:2807942/1‑149 (MQ=255) aTGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTc < 1:1807331/149‑1 (MQ=255) aTGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTc > 1:375724/1‑149 (MQ=255) tGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCa > 2:799410/1‑149 (MQ=255) aTCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGAAACCCATCACACTCACACGGGTGGCACTGGACAACGTCAAc > 2:4628003/1‑149 (MQ=255) aTCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAAc > 1:4529862/1‑149 (MQ=255) cTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACAt < 2:3539682/149‑1 (MQ=255) tGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACAtt > 1:1623760/1‑149 (MQ=255) cgcTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAg > 1:1001781/1‑149 (MQ=255) cTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGAt > 1:1907787/1‑149 (MQ=255) tGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGAtt < 1:4410673/149‑1 (MQ=255) gAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATAACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtg < 1:1877128/149‑1 (MQ=255) aaaGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtga > 1:2822068/1‑149 (MQ=255) aaaGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtga > 2:4162813/1‑149 (MQ=255) aaaGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtga > 2:4088438/1‑149 (MQ=255) aaGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtgat < 2:2324516/149‑1 (MQ=255) aaGACATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATtgat < 2:4526500/149‑1 (MQ=255) aCATTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGac < 2:1944914/149‑1 (MQ=255) aTTCAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGacac < 1:3371447/149‑1 (MQ=255) cAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCTATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGAcaccac > 2:2218295/1‑149 (MQ=255) cAGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGAcaccac < 2:602714/149‑1 (MQ=255) aGGTCAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACg > 1:422378/1‑149 (MQ=255) cAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTAt < 1:2083250/149‑1 (MQ=255) cAACATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTAt < 2:3157226/149‑1 (MQ=255) aaCATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATc > 2:2012999/1‑149 (MQ=255) aaCATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATc < 1:798011/149‑1 (MQ=255) aCATCGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCg > 1:2099252/1‑149 (MQ=255) cGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGa > 1:3576848/1‑149 (MQ=255) cGACAGTAAAAAAATGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGa < 1:3503855/149‑1 (MQ=255) aaaaaTGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCa > 2:1058541/1‑149 (MQ=255) aaaaaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCa < 2:113595/149‑1 (MQ=255) aaaaaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCa < 1:1109550/149‑1 (MQ=255) aaaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCAcc < 2:558397/149‑1 (MQ=255) aaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCt < 2:4603583/149‑1 (MQ=255) aaTGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCt < 1:489954/149‑1 (MQ=255) tGCATCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCTcc > 1:3137791/1‑149 (MQ=255) | ACGTTCGTTATGAGCAGCCAGGCGTGGCGGTAAAAGCGGGCAATCTGCATCTGGCTGTCGGGCTTGAGTGCCTGTGGAACAGCAGTGTTTGTATTAATGATCTGGCGCTGAAAGACATTCAGGTCAACATCGACAGTAAAAAAATGCCTCCTTCTGAACAGGTTGAAGAAGAGGAAGATAGCGGTCCGCTGGATCTCTCCACGCCGTATCCCATCACCCTGACACGGGTGGCACTGGACAACGTCAACATTAAGATTGATGACACCACGGTATCGGTGATGGACTTCACCTCC > CP009273/4434113‑4434405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |