| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,515,432 | T→A | 7.3% | S63S (TCA→TCT) | yjhI ← | putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,515,432 | 0 | T | A | 7.3% | 870.0 / 45.9 | 274 | S63S (TCA→TCT) | yjhI | putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (102/152); new base A (12/8); total (114/160) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01 | |||||||||||
Only 100 of 277 total aligned reads displayed.
GATAGATAGCCGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTGGGTTAATAT > CP009273/4515284‑4515578 | gatagataGCCGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGt > 2:575363/1‑149 (MQ=255)gatagataGCCGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGt > 2:2307194/1‑149 (MQ=255) agatagCCGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGaa < 2:2854582/149‑1 (MQ=255) gatagCCGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAAt > 1:3385956/1‑149 (MQ=255) atagCCGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAAta < 2:2612061/149‑1 (MQ=255) gCCGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAAtagta < 1:407422/149‑1 (MQ=255) ccGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAAtagtag < 1:790538/149‑1 (MQ=255) ccGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAAtagtag < 2:1086239/149‑1 (MQ=255) aaTGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgt > 1:504295/1‑149 (MQ=255) aTGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgtt > 1:4581927/1‑149 (MQ=255) aTGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgtg > 2:1227421/1‑148 (MQ=255) tGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgttt > 1:3529783/1‑149 (MQ=255) gCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgtttt < 1:812919/149‑1 (MQ=255) gCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGAGAATAGTAGCCgtttt < 1:1075248/149‑1 (MQ=255) ctcCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgtttttgt > 2:3244753/1‑149 (MQ=255) ctcCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgtttttgt > 1:3085475/1‑149 (MQ=255) tcCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgtttttgtt < 1:2921097/149‑1 (MQ=255) cATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgtttttgtttt < 1:4208019/149‑1 (MQ=255) cATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCgtttttgtttt > 1:1179332/1‑149 (MQ=255) tCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTtta > 2:1793791/1‑149 (MQ=255) tCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTtta > 2:1974108/1‑149 (MQ=255) tCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTtta > 2:4183890/1‑149 (MQ=255) cGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTttaa > 2:1053894/1‑149 (MQ=255) aGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTGTTTGTTTTTATTTAAGaa > 1:3806483/1‑149 (MQ=255) aTGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAAc < 2:42911/149‑1 (MQ=255) aaCCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTTTTTTTAATTAAGAAACCACaaa > 1:2994649/1‑148 (MQ=255) aCCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATc < 1:1723539/149‑1 (MQ=255) aCCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATc < 1:1722720/149‑1 (MQ=255) ccAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATcc > 2:4427187/1‑149 (MQ=255) gTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATccacc < 1:2114199/149‑1 (MQ=255) gTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATccacc > 2:1399412/1‑149 (MQ=255) ccACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCAt > 1:1405518/1‑149 (MQ=255) cTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTAc < 1:996754/149‑1 (MQ=255) ttttCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGACACCACAATCCACCATTACa > 2:3059189/1‑149 (MQ=255) aGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCaa < 1:2708255/149‑1 (MQ=255) gCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAAt < 1:2557640/149‑1 (MQ=255) gACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATaa > 2:88296/1‑149 (MQ=255) aCAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATtaaataaa > 2:4060013/1‑149 (MQ=255) aCAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATaaa < 2:3357857/149‑1 (MQ=255) aCAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAAACACAATACACCATTACATTCAATaaa > 1:3859303/1‑149 (MQ=255) aCAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTGTTTGTTTTTTATTAAGAAACCACAATACACCATTACAATCaaaaaa > 1:2219668/1‑149 (MQ=255) aaCTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAAtt < 1:4119128/149‑1 (MQ=255) aCTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTa < 1:3225763/149‑1 (MQ=255) aCTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTa < 1:836028/149‑1 (MQ=255) tCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAg < 1:101383/149‑1 (MQ=255) ccTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGc < 1:3817993/149‑1 (MQ=255) aTTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGgct < 1:4308214/149‑1 (MQ=255) aTTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGgct < 2:3215169/149‑1 (MQ=255) ggCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGgctgct < 2:1722243/149‑1 (MQ=255) gCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCtt < 2:76497/149‑1 (MQ=255) gCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCtt < 2:3496707/149‑1 (MQ=255) ccGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCttt < 2:3515221/149‑1 (MQ=255) aGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGt < 1:2856174/149‑1 (MQ=255) gTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTa > 2:3558278/1‑149 (MQ=255) tCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTAc < 2:3334340/149‑1 (MQ=255) cACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACt < 2:2332482/149‑1 (MQ=255) ccTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTTTTTTTTATTAATAAAACACAAAACACCATTACAATCAAAAAAATAATCAGGCGGCTTTTGGGGTaattg > 1:2005805/1‑145 (MQ=255) ccTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTgg < 1:2749507/149‑1 (MQ=255) cTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTTTTTTTAATTAATAAACCACAATACACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGa > 1:1547489/1‑149 (MQ=255) cTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTGTTTGTTTTTTATTAATAAACCACAATACACCAATACAATAAATAAAATAATCAGGCTGCGTTTGGGGTTCTGGa > 1:2418481/1‑149 (MQ=255) tatatTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAatttat > 1:306142/1‑149 (MQ=255) tatTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCtt < 1:680810/128‑1 (MQ=255) tatTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTAGTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAatttattt < 2:213779/149‑1 (MQ=255) tttGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTtaat < 2:1274797/149‑1 (MQ=255) gACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAAc < 2:3990967/149‑1 (MQ=255) gtgtAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCa < 1:4495643/149‑1 (MQ=255) gtgtAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGATTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCa < 2:4416136/149‑1 (MQ=255) gtAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCata < 1:4403341/149‑1 (MQ=255) cGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAAc < 2:4664905/149‑1 (MQ=255) gCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACt < 1:1853262/149‑1 (MQ=255) ccTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACtt < 2:504295/149‑1 (MQ=255) tGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGc < 2:731948/149‑1 (MQ=255) tGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACATGc > 2:176747/1‑149 (MQ=255) gACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGcc < 2:3796127/149‑1 (MQ=255) cAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCAt > 2:640887/1‑149 (MQ=255) aaCCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATa < 1:373225/149‑1 (MQ=255) aCCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAATAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCAAAc > 1:168672/1‑149 (MQ=255) cccAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATAcc > 2:1448478/1‑149 (MQ=255) cccAATTCGTAGTTTTTTATTCCCAGAGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATAcc > 2:269269/1‑149 (MQ=255) ccAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCa > 2:3855293/1‑149 (MQ=255) cAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCaa < 1:1429492/149‑1 (MQ=255) aaTTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAAACACAATACACCATTAAAATCAATAAATTTAGAATGCTGCTTTTGGGGTACTGGAATTTATTTAATTAATACATATAACTTGCCATACCAAc > 1:4618949/1‑149 (MQ=255) ttCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAAccc < 2:2740523/149‑1 (MQ=255) ttCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATACACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAAccc > 2:1825880/1‑149 (MQ=255) tCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCa < 1:4402457/149‑1 (MQ=255) tCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCa < 2:4108174/149‑1 (MQ=255) gTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATg < 1:3593165/149‑1 (MQ=255) gTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTTTTTTTAATTAAGAAAACACAAAACACCAATAAAATAAATAAAATAATCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAAATTGCCATACAAACCCCTGCaa > 1:1763108/1‑149 (MQ=255) gTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCaa < 1:2070598/149‑1 (MQ=255) gTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCaa > 2:1338803/1‑149 (MQ=255) ttttttATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAAt < 1:605552/149‑1 (MQ=255) tttttATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAAAACACCATTACATTAAATAAATTAATCAGGCTGGTTTTGGGGTACTGGAATTTATTTTATAAATACATATAACTTGCCCTACCAAACCAAGCAAtg > 1:4561917/1‑149 (MQ=255) tttATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAAtgtg > 2:2382776/1‑149 (MQ=255) tATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTggg < 2:1671255/149‑1 (MQ=255) aTTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTGGGt > 2:244322/1‑149 (MQ=255) ttCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTGGGtt < 1:3901850/149‑1 (MQ=255) cccAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTGGGTTaa < 1:1053894/149‑1 (MQ=255) cccAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTGGGTTaa < 1:3261146/149‑1 (MQ=255) cccAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTGGGTTaa < 1:588489/149‑1 (MQ=255) ccAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTGGGTTAat > 2:1996602/1‑149 (MQ=255) | GATAGATAGCCGAAATGCTCTCCATCGCCCCAAGATGACAAACCAGTCCACTTTTCAGCGACAACTCCTGCATTGGCCGCTTAGTCACCTCAAATATATTTTGACGGTGTAACGCCTGACAACCCAATTCGTAGTTTTTTATTCCCAGTGAATAGTAGCCGTTTTTGTTTTTAATTAAGAAACCACAATCCACCATTACATTCAATAAATTAAGCAGGCTGCTTTTGGGGTACTGGAATTTATTTAATAACTCCATATAACTTGCCATACCAACCCATGCAATGTGGGTTAATAT > CP009273/4515284‑4515578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |