| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,519,217 | A→T | 9.6% | F282I (TTC→ATC) | sgcC ← | putative PTS system EIIC permease component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,519,217 | 0 | A | T | 9.6% | 836.3 / 65.0 | 270 | F282I (TTC→ATC) | sgcC | putative PTS system EIIC permease component |
| Reads supporting (aligned to +/- strand): ref base A (124/120); new base T (15/11); total (139/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.17e-01 | |||||||||||
Only 100 of 279 total aligned reads displayed.
AGGTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGG > CP009273/4519069‑4519365 | ggTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGaaa > 1:1257690/1‑149 (MQ=255) gTCTGCGAGGGGTAACACTTTGTTGCCCGGTAATATGCTGGCCAGAAGTAACAGAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAat < 2:2962326/149‑1 (MQ=255) gTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAat < 1:2425985/149‑1 (MQ=255) tGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATAtt < 2:2091957/149‑1 (MQ=255) gCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATAttt > 1:3997456/1‑149 (MQ=255) cGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTc < 1:170188/149‑1 (MQ=255) ggTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGgaa > 1:3708592/1‑149 (MQ=255) gTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaag > 1:4405367/1‑149 (MQ=255) aaCACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaagaa > 1:3693600/1‑149 (MQ=255) aaCACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaagaa < 2:2030121/149‑1 (MQ=255) acacTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGCTATCAGTAGCAGAACGACAGCAATGGTGGTTGGATTCCACAGCGACACAGCAGAATCCAGACCGATATACACTTCACGTCCTTAGAAATATTTCTGTAAGAAc > 2:4365284/1‑149 (MQ=255) cacTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACt < 2:3355687/149‑1 (MQ=255) acTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACtt > 2:3020503/1‑149 (MQ=255) acTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACtt > 2:4658326/1‑149 (MQ=255) tttGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTc < 1:1161858/149‑1 (MQ=255) gttgCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTg > 2:4133309/1‑149 (MQ=255) cccGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCAcc < 2:1964084/149‑1 (MQ=255) aTGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGAt < 2:4509822/149‑1 (MQ=255) tGCTGGCCAGAATTAACAGAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATg < 2:2636066/149‑1 (MQ=255) tGCTGGCCAGAATTAACAGAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATg < 2:4688151/149‑1 (MQ=255) gCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATgg < 2:2127494/149‑1 (MQ=255) gCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATgg < 2:4626031/149‑1 (MQ=255) tGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgc > 2:1742436/1‑149 (MQ=255) ggCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgca > 2:516794/1‑149 (MQ=255) ggCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgca < 2:306220/149‑1 (MQ=255) ggCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgca > 1:2463557/1‑149 (MQ=255) gCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcag > 2:4547412/1‑149 (MQ=255) ccAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcagc < 2:2274065/149‑1 (MQ=255) ccAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcagc < 1:3780588/149‑1 (MQ=255) ccAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcagc > 1:3273916/1‑149 (MQ=255) cAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcagca > 1:932332/1‑149 (MQ=255) cAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcagca < 1:3526635/149‑1 (MQ=255) cAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcagca > 2:1150422/1‑149 (MQ=255) cAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcagca > 1:1340473/1‑149 (MQ=255) aGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGcagcag > 1:3440594/1‑149 (MQ=255) aTTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGcc < 2:2566690/149‑1 (MQ=255) ttAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGccc < 1:4113487/149‑1 (MQ=255) tAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCt > 2:3232758/1‑149 (MQ=255) tAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCt < 2:3252580/149‑1 (MQ=255) aaCATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTc < 1:1567859/149‑1 (MQ=255) tAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGTCACTcaaca > 1:4778371/1‑149 (MQ=255) aTGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAAt > 2:642294/1‑149 (MQ=255) ggTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAg < 2:336621/149‑1 (MQ=255) tCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCgg < 1:558226/149‑1 (MQ=255) tCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCgg < 2:3611115/149‑1 (MQ=255) cAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGa < 1:2386441/149‑1 (MQ=255) aGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGAt > 2:861191/1‑149 (MQ=255) gTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATc > 1:4748584/1‑149 (MQ=255) gCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATg > 1:2344402/1‑149 (MQ=255) gCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATg > 1:2528973/1‑149 (MQ=255) cAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgc < 1:3689021/149‑1 (MQ=255) cAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgc < 1:2954360/149‑1 (MQ=255) aGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgcg > 2:2437049/1‑149 (MQ=255) aGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgcg > 1:2708682/1‑149 (MQ=255) ccGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCgg < 2:3525541/149‑1 (MQ=255) ccGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCgg < 2:1571711/149‑1 (MQ=255) ccGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCgg < 1:1907694/149‑1 (MQ=255) ccGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTCTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCgg < 1:742/149‑1 (MQ=255) cGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCggg < 1:3020503/149‑1 (MQ=255) gACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGa > 2:4201368/1‑149 (MQ=255) gACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAGCAATCAGGCGGATCATGCGCGGGa > 2:3125237/1‑149 (MQ=255) gACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGa > 2:4351786/1‑149 (MQ=255) aaTGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAacaaca > 1:2784763/1‑149 (MQ=255) tggtggTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGACCAACAcc > 2:2786766/1‑149 (MQ=255) ggtTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGa < 2:2374888/149‑1 (MQ=255) ggtTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGa < 2:4772286/149‑1 (MQ=255) ggATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGc > 2:1726683/1‑149 (MQ=255) gATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGcc > 2:942633/1‑149 (MQ=255) cccAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAAc < 1:1037149/149‑1 (MQ=255) cccAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAAc > 1:2215295/1‑149 (MQ=255) aGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGt > 1:2082215/1‑149 (MQ=255) aGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGt > 1:4481906/1‑149 (MQ=255) tCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatc > 2:2055182/1‑149 (MQ=255) cacaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatca < 2:2939648/149‑1 (MQ=255) cacaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatca < 1:1957121/149‑1 (MQ=255) cacaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatca > 1:2647340/1‑149 (MQ=255) cacaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatca < 1:3122116/149‑1 (MQ=255) cacaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatca < 2:185080/149‑1 (MQ=255) agcagTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAAtcatca < 2:4069936/149‑1 (MQ=255) agTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCACCGGGAATCATCAGAc > 2:2236570/1‑149 (MQ=255) tATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTg < 1:3785527/149‑1 (MQ=255) aTCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTgg < 1:2251192/149‑1 (MQ=255) gACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCaa < 1:815711/149‑1 (MQ=255) gACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCaa > 2:3936111/1‑149 (MQ=255) ccGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAAcc > 1:1486996/1‑149 (MQ=255) ccGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAAcc > 2:774712/1‑149 (MQ=255) cGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCt < 2:3856577/149‑1 (MQ=255) tataCACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTa > 2:2212740/1‑149 (MQ=255) ataCACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTaa < 2:736104/149‑1 (MQ=255) ataCACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTaa < 2:4602634/149‑1 (MQ=255) cacTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGc > 1:3189054/1‑149 (MQ=255) ttCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCtt < 1:4701578/149‑1 (MQ=255) aCGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCAc < 1:4521846/149‑1 (MQ=255) gTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCa > 1:2153349/1‑149 (MQ=255) gTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCa < 2:1184161/149‑1 (MQ=255) tCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAg > 2:106742/1‑149 (MQ=255) tttGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgccg > 2:1457474/1‑149 (MQ=255) tttGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgccg > 2:1882713/1‑149 (MQ=255) tttGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgccg > 1:3923246/1‑149 (MQ=255) aaaTATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCATCAACAATCAGGCGGATCATGCGCGGGAACAACACCAAGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAg > 1:3987636/1‑149 (MQ=255) | AGGTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGG > CP009273/4519069‑4519365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |