| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,570,897 | G→T | 10.5% | S128Y (TCT→TAT) | hsdS ← | specificity determinant for hsdM and hsdR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,570,897 | 0 | G | T | 10.5% | 977.7 / 55.8 | 281 | S128Y (TCT→TAT) | hsdS | specificity determinant for hsdM and hsdR |
| Reads supporting (aligned to +/- strand): ref base G (129/122); new base T (12/18); total (141/140) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 297 total aligned reads displayed.
CGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACATTGCAATAAC > CP009273/4570749‑4571045 | cgcCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGagaag < 2:771684/149‑1 (MQ=255) ccAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGAt < 1:3555158/149‑1 (MQ=255) ccAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGAt < 1:1561885/149‑1 (MQ=255) gcagcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAATAtttt < 2:2378840/149‑1 (MQ=255) agcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtgt < 2:196508/149‑1 (MQ=255) aTCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAATATTTTGTGAAAt > 1:1527312/1‑149 (MQ=255) gTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCa > 1:2229296/1‑149 (MQ=255) tttttCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCaa < 1:4051433/149‑1 (MQ=255) ttttCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAAt < 1:1903746/149‑1 (MQ=255) tCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATaaa < 1:4305488/149‑1 (MQ=255) aGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAATATTTTGTGAAATGAGCAATAAAAc < 1:2687426/149‑1 (MQ=255) gCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAAcc > 2:1125279/1‑149 (MQ=255) gCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAAcc > 1:321984/1‑149 (MQ=255) gatgatTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAg > 1:4554338/1‑149 (MQ=255) gatgatTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAg > 2:2158187/1‑149 (MQ=255) atgatTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGa > 1:4318586/1‑149 (MQ=255) atTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGaaaa < 1:3296252/149‑1 (MQ=255) tttttGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAata > 1:654327/1‑149 (MQ=255) ttttGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAatat < 2:2786892/149‑1 (MQ=255) ttttGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAatat < 2:4439195/149‑1 (MQ=255) ggCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAATATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGttttt < 1:3719819/149‑1 (MQ=255) ggCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGttttt < 2:4684628/149‑1 (MQ=255) ggCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGttttt > 2:2297418/1‑149 (MQ=255) ggCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGttttt < 1:2195240/149‑1 (MQ=255) cAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCa < 2:3801682/149‑1 (MQ=255) aaGTGGTGTGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAg < 2:2927109/149‑1 (MQ=255) aaGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAg < 1:4165021/149‑1 (MQ=255) aaGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAg < 2:503567/149‑1 (MQ=255) aaGTGGTGGGATTGGTATATTGATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAg < 1:4460507/149‑1 (MQ=255) aGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAgg > 2:1272167/1‑149 (MQ=255) gtggtgGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGa < 2:3978692/149‑1 (MQ=255) gtggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGt > 1:4495369/1‑149 (MQ=255) gtggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGt > 2:1600671/1‑149 (MQ=255) gtggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGt > 1:3539922/1‑149 (MQ=255) ggATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAAt < 1:699796/149‑1 (MQ=255) gATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATa > 1:3381612/1‑149 (MQ=255) ttGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATaca > 1:3025957/1‑149 (MQ=255) atatTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCa > 1:2870252/1‑149 (MQ=255) atatTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAG‑TTTTCAGGACGTAATACACCGCaa > 2:3483085/1‑149 (MQ=255) tatTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCaa > 1:3709367/1‑149 (MQ=255) tatTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCaa > 1:8524/1‑149 (MQ=255) tatTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCaa > 2:3621966/1‑149 (MQ=255) caaatcaaaGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATgcgc < 1:2017532/149‑1 (MQ=255) caaatcaaaGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATgcgc < 2:2852899/149‑1 (MQ=255) atcaaaGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGa > 1:576239/1‑149 (MQ=255) tcaaaGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGaa > 2:3054560/1‑149 (MQ=255) aaGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACt > 1:108214/1‑149 (MQ=255) gCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTAc > 1:1706402/1‑149 (MQ=255) gCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTAc < 2:4282714/149‑1 (MQ=255) cTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACa < 1:1000491/149‑1 (MQ=255) ttGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACAt > 2:171973/1‑149 (MQ=255) tGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACAtt < 1:1220328/149‑1 (MQ=255) tGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACAtt < 2:1420776/149‑1 (MQ=255) gCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAAt > 2:1772012/1‑149 (MQ=255) cTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATg < 2:2741278/149‑1 (MQ=255) ttAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATgg < 1:3592908/149‑1 (MQ=255) ttAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATgg < 1:522971/149‑1 (MQ=255) tAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGt < 1:1865248/149‑1 (MQ=255) aaTATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGATCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTa > 1:278881/1‑149 (MQ=255) atatTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGGGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAg > 1:758166/1‑149 (MQ=255) atatTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAg > 1:2060586/1‑149 (MQ=255) tattaATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGc < 1:1757368/149‑1 (MQ=255) ttaATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAATATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTg < 1:131237/149‑1 (MQ=255) ttaATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTg > 2:388886/1‑149 (MQ=255) ttaATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTg > 2:2005276/1‑149 (MQ=255) aaTATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTGATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGAt < 2:4243583/149‑1 (MQ=255) atatTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAATATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGAtg > 1:1821557/1‑149 (MQ=255) atatTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGAtg > 2:870285/1‑149 (MQ=255) tttGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGc < 1:3982396/149‑1 (MQ=255) tGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCgg < 1:1603203/149‑1 (MQ=255) gCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGa < 1:3905995/149‑1 (MQ=255) aCCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGAtt < 2:3025957/149‑1 (MQ=255) agcagAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTAc > 2:150758/1‑149 (MQ=255) gcagAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTAcc > 1:1821434/1‑149 (MQ=255) aaaGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACt > 1:3139570/1‑149 (MQ=255) aaaGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACAAACt > 2:1831420/1‑149 (MQ=255) aaaGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATGTCCCAACt > 2:98879/1‑149 (MQ=255) tgatgaAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACgg < 1:1231278/149‑1 (MQ=255) atgaAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGAt < 1:492762/149‑1 (MQ=255) atgaAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGAt < 2:697743/149‑1 (MQ=255) atgaAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGAt < 2:576239/149‑1 (MQ=255) atgaAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGAt > 2:2224187/1‑149 (MQ=255) tgaAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGAtt < 2:892149/149‑1 (MQ=255) tgaAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGAtt > 2:1667997/1‑149 (MQ=255) gaAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGAttt < 1:132353/149‑1 (MQ=255) aaaTTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTg > 2:2648982/1‑149 (MQ=255) ttttGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTc < 1:4750503/149‑1 (MQ=255) ttGTTTCGATAAAGAGAATATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTccc < 1:816446/149‑1 (MQ=255) ttGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTccc < 2:1296090/149‑1 (MQ=255) ttCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCtgat > 2:4470153/1‑149 (MQ=255) gATAAAGAGAATATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGAc < 1:1118541/149‑1 (MQ=255) aTAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACa < 1:2619208/149‑1 (MQ=255) aTAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACa > 2:204731/1‑149 (MQ=255) aTAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACa > 1:159682/1‑149 (MQ=255) aaaGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACAtt < 2:2515810/149‑1 (MQ=255) aaaGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACAtt < 2:1475131/149‑1 (MQ=255) aaGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACATTg > 2:3168941/1‑149 (MQ=255) agaagaTTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACATTGCaa > 2:1279208/1‑149 (MQ=255) agaagaTTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACATTGCaa < 1:3628763/149‑1 (MQ=255) agaTTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACATTGCAATaa > 2:3685243/1‑149 (MQ=255) | CGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATACACCGCAAAATGCGCCGAAACTACATTCAAATGGTAGATGCTGATGTGCGGATTTACCAACTACGGATTTGCTCCCTGATGACATTGCAATAAC > CP009273/4570749‑4571045 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |