| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,591,139 | C→A | 100% | D66Y (GAT→TAT) | dnaT ← | DNA biosynthesis protein (primosomal protein I) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,591,139 | 0 | C | A | 99.3% | 1024.4 / ‑1.8 | 309 | D66Y (GAT→TAT) | dnaT | DNA biosynthesis protein (primosomal protein I) |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base A (142/160); total (145/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 309 total aligned reads displayed.
CTCTCTTAGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGTGATCGTG > CP009273/4590993‑4591283 | ctctTAGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCtt > 2:2021898/1‑149 (MQ=255) ctctTAGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCtt < 1:4102061/149‑1 (MQ=255) ctTAGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTcc > 1:1202945/1‑149 (MQ=255) ctTAGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTcc < 1:545941/149‑1 (MQ=255) ctTAGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTcc < 2:3255937/149‑1 (MQ=255) tAGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCg < 2:1423959/149‑1 (MQ=255) aGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGACTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCgg > 2:1381494/1‑149 (MQ=255) gcgcCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGa < 1:1031817/149‑1 (MQ=255) gcCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGAcg > 2:1648395/1‑149 (MQ=255) gcCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGAcg > 2:2157394/1‑149 (MQ=255) gcCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGAcg > 1:2478475/1‑149 (MQ=255) cGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGcc < 1:4414967/149‑1 (MQ=255) ccATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCt > 2:2881059/1‑149 (MQ=255) ccATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGAGATAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCt > 1:3500864/1‑149 (MQ=255) tAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCtttt > 1:1248929/1‑149 (MQ=255) gcgcCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTttct > 2:3531099/1‑149 (MQ=255) gccgccAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTttcttc < 2:2400556/149‑1 (MQ=255) ccgccAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCTGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTcc < 2:1188971/149‑1 (MQ=255) ccgccAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCTGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTcc < 2:3678079/149‑1 (MQ=255) cgccAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCa < 2:719433/149‑1 (MQ=255) ccAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAgc < 2:3393245/149‑1 (MQ=255) cAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAgcg > 1:1643071/1‑149 (MQ=255) aGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAgcgc > 1:1668565/1‑149 (MQ=255) gATAAACTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCcagca < 1:3502049/149‑1 (MQ=255) tAAACTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGt < 2:570303/149‑1 (MQ=255) tAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGt > 2:2990139/1‑149 (MQ=255) aaaaTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGtt < 2:4541235/149‑1 (MQ=255) aaaTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTc < 1:333878/149‑1 (MQ=255) tCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGc < 1:222119/149‑1 (MQ=255) ggCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCca > 2:4235374/1‑149 (MQ=255) cATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcagg > 2:4315670/1‑149 (MQ=255) tCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcg > 1:2573439/1‑149 (MQ=255) gggTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcgtg > 1:1374304/1‑149 (MQ=255) gTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcgtgca < 2:4256000/149‑1 (MQ=255) ccAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcgtgcaggcg > 2:3402989/1‑149 (MQ=255) cAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcgtgcaggcgt > 1:400270/1‑149 (MQ=255) aGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcgtgcaggcgtg < 2:2847873/149‑1 (MQ=255) gTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGa > 1:145199/1‑149 (MQ=255) cGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACgg < 2:1345459/149‑1 (MQ=255) cGGAGACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACgg < 2:1431900/149‑1 (MQ=255) aTACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGAGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCAt > 2:578809/1‑149 (MQ=255) tACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATa > 1:1531317/1‑149 (MQ=255) cATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATaaa < 2:2064083/149‑1 (MQ=255) cATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGGTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCGTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATaaa < 2:197388/149‑1 (MQ=255) gCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGc > 1:79061/1‑149 (MQ=255) gCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGc < 1:27929/149‑1 (MQ=255) cGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGcc < 1:1833901/149‑1 (MQ=255) cGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGcc < 2:3873007/149‑1 (MQ=255) gAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCg < 1:4227225/149‑1 (MQ=255) aaTTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCgg > 2:1865025/1‑149 (MQ=255) aaTTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCgg < 2:1374279/149‑1 (MQ=255) aaTTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCgg < 2:890055/149‑1 (MQ=255) aaTTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCgg < 1:3834466/149‑1 (MQ=255) aaTTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGCCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCgg > 2:2836368/1‑149 (MQ=255) aTTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCtgg < 2:3277382/149‑1 (MQ=255) tCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCa > 2:2339897/1‑149 (MQ=255) cATGGGTCCAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGt < 2:856912/149‑1 (MQ=255) tGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACCTAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAACACGCCGGGGCATTGTTa < 2:4084900/149‑1 (MQ=255) gggTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAg < 2:652512/149‑1 (MQ=255) aGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCCGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATa < 1:703161/149‑1 (MQ=255) aGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATa < 1:1522027/149‑1 (MQ=255) aCGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGc > 1:4572659/1‑149 (MQ=255) gggAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCaa < 1:2272054/149‑1 (MQ=255) ggAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCCGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCCTTGTTAGCAAATACGGCAAc > 1:462542/1‑149 (MQ=255) gAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAAcc < 2:2260550/149‑1 (MQ=255) aGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACca > 2:216904/1‑149 (MQ=255) gCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGTAACcac < 1:1995897/149‑1 (MQ=255) gCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACcac > 2:1740840/1‑149 (MQ=255) gCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACcac > 1:3567139/1‑149 (MQ=255) gCTTGCGGTTCCTGATAGATTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACAcc < 1:1746328/149‑1 (MQ=255) gCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACAcc > 1:2068025/1‑149 (MQ=255) ttGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGc < 2:106632/149‑1 (MQ=255) ttCCTGATAGAGTTGATCGTCCAGAGCGACATAGCGTCCCGGACGCGCCAGCTTTTCTTCCCGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAg < 1:4269035/149‑1 (MQ=255) tCCTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGc < 2:2506589/149‑1 (MQ=255) ccTGATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCt < 1:2353471/149‑1 (MQ=255) gATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCtttt < 2:4369443/149‑1 (MQ=255) gATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCtttt < 1:2447112/149‑1 (MQ=255) gATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCtttt < 1:3913752/149‑1 (MQ=255) gATAGAGTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCtttt > 1:2852720/1‑149 (MQ=255) agagTTGATCGTCCAGAGCGAAATTGCTTCCCGTACGCGCCAGCTTTTCTTCCAGCGCCAGCTGTTCAGCCTGGGGTGCAGGGGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGcc < 1:3362138/149‑1 (MQ=255) gagTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGTCa < 1:290797/149‑1 (MQ=255) gTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGa > 1:1119417/1‑149 (MQ=255) gTTGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGa > 1:4078320/1‑149 (MQ=255) ttGATCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGaa < 1:3602347/149‑1 (MQ=255) aTCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACgg > 2:4524733/1‑149 (MQ=255) aTCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACgg < 2:4640813/149‑1 (MQ=255) aTCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACgg > 1:984710/1‑149 (MQ=255) tCGTCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGt < 2:2675980/149‑1 (MQ=255) tCCAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTg > 2:2726636/1‑149 (MQ=255) ccAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTgg > 1:273810/1‑149 (MQ=255) ccAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTgg > 2:3055349/1‑149 (MQ=255) cAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGt > 2:2789608/1‑149 (MQ=255) cAGAGCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGt < 2:1827660/149‑1 (MQ=255) cAGAGCGACATAGCTACCCGGACGCTCCAGCTTTACATCCAGCGCCAGCAGATCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCAATGTTAGCAAATACGGCAACCACACCGCCATCAGCTATTGCCAGAACGGTGTGGt > 2:4763813/1‑149 (MQ=255) agagCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGTg > 1:3989519/1‑149 (MQ=255) gagCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAACACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGTGa < 2:1643071/149‑1 (MQ=255) agCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGTGAt < 2:413827/149‑1 (MQ=255) gCGACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGTGATc > 1:92298/1‑149 (MQ=255) gACATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGTGATCgt > 1:501614/1‑149 (MQ=255) aCATAGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGTGATCgtg > 2:3997473/1‑149 (MQ=255) | CTCTCTTAGCGCCACGCCCCATAGCGCCGCCAGGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCATTGTTAGCAAATACGGCAACCACACCGCCTTCAGCTTTTGCCAGAACGGTTTGGTGATCGTG > CP009273/4590993‑4591283 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |