| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 540,762 | C→T | 12.3% | intergenic (‑14/+8) | allC ← / ← allD | allantoate amidohydrolase/ureidoglycolate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 540,762 | 0 | C | T | 12.3% | 945.7 / 90.0 | 301 | intergenic (‑14/+8) | allC/allD | allantoate amidohydrolase/ureidoglycolate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (115/149); new base T (26/11); total (141/160) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.65e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 310 total aligned reads displayed.
TTTTTTAAATTGCTGCTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATATCCTGATCCTGTCCGGGATA > CP009273/540614‑540910 | ttttttATATTGCTGCTGGGTTTCCAGACATTCCGGCGAATATAGTAATCGGGTCATCCCACCCGCTGGGTCAGCGCCTACAGAGGAAAGCCTGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTTATCATAAGAAAGTCCTGtc < 1:3489215/149‑1 (MQ=255) tttttAAATTGCTGCTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGtct < 2:2289749/149‑1 (MQ=255) ttttAAATTGCTGCTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGtctc < 1:4672686/149‑1 (MQ=255) ttttAAATTGCTGCTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGtctc < 1:3365231/149‑1 (MQ=255) tAAATTGCTGCTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCaat < 2:2724515/149‑1 (MQ=255) aTTGCTGCTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCaataat > 1:548079/1‑149 (MQ=255) ttGCTGCTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAatt > 2:668906/1‑149 (MQ=255) tgctgcTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCACTAatta > 2:3371950/1‑149 (MQ=255) tgctgGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTg < 2:4750434/149‑1 (MQ=255) gggTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATACTTATTGCGCa > 1:40333/1‑149 (MQ=255) gggTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCa > 1:818481/1‑149 (MQ=255) tttCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAg < 2:2133030/149‑1 (MQ=255) ccAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGa > 1:344349/1‑149 (MQ=255) cAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGAt > 1:1832117/1‑149 (MQ=255) gCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGAttt > 1:3636684/1‑149 (MQ=255) ccATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGAtttt < 2:4408053/149‑1 (MQ=255) cATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGAttttt < 1:2200513/149‑1 (MQ=255) aTTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTtttc < 1:643317/149‑1 (MQ=255) ccGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTtttcgtt < 1:949813/149‑1 (MQ=255) gCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAGTTATTGCGCAAAGGGATTtttcgtttcg > 1:4430478/1‑149 (MQ=255) cGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTttcgtttcgt < 2:1153972/149‑1 (MQ=255) gAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTttcgtttcgtc > 2:3044521/1‑148 (MQ=255) gAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTa < 1:2429160/149‑1 (MQ=255) tAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGa < 2:3195685/149‑1 (MQ=255) aaaGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGAc < 2:318642/149‑1 (MQ=255) aaaGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGAc > 2:205419/1‑149 (MQ=255) aaaCGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGtt < 2:1551504/149‑1 (MQ=255) aaCGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTta > 2:2616385/1‑149 (MQ=255) aCGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTtat > 2:1076293/1‑149 (MQ=255) cGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTtata < 1:3079733/149‑1 (MQ=255) gggTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATaa < 2:3387017/149‑1 (MQ=255) tCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAgc > 1:1580407/1‑149 (MQ=255) aTCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAgcgc > 1:1232489/1‑149 (MQ=255) aTCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAgcgc > 2:1494045/1‑149 (MQ=255) aTCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAgcgc < 1:919186/149‑1 (MQ=255) cccACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGt < 2:4627129/149‑1 (MQ=255) ccACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTc < 2:1115467/149‑1 (MQ=255) ccGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGaa > 1:3042634/1‑149 (MQ=255) ccGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGaa < 1:3139978/149‑1 (MQ=255) cGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGaaa > 2:3724435/1‑149 (MQ=255) cGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGaaa < 1:2741024/149‑1 (MQ=255) gggTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTaa > 1:4258881/1‑149 (MQ=255) gTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATCATTCTTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAAt > 2:4260755/1‑149 (MQ=255) tCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATa > 1:2137303/1‑149 (MQ=255) tCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATa > 2:1575890/1‑149 (MQ=255) cAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATAc > 2:380838/1‑149 (MQ=255) cAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATAc < 1:4474384/149‑1 (MQ=255) ccAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTa > 2:2428917/1‑149 (MQ=255) ccAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTa > 2:2231512/1‑149 (MQ=255) ccAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTa < 1:2598345/149‑1 (MQ=255) ccAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTa < 2:1783594/149‑1 (MQ=255) aaaaGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTaaa < 2:1364065/149‑1 (MQ=255) aaGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAata < 1:112589/149‑1 (MQ=255) agagGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAatat < 2:4582150/149‑1 (MQ=255) agGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATatca < 2:1800417/149‑1 (MQ=255) ggAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTCTTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATatcat > 1:1738883/1‑149 (MQ=255) ggAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATatcat > 1:2803016/1‑149 (MQ=255) aaGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATcaa > 1:1695377/1‑149 (MQ=255) aGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATcaac < 1:3764712/149‑1 (MQ=255) aGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATcaac < 1:209719/149‑1 (MQ=255) cAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAAt < 2:818652/149‑1 (MQ=255) aGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAAtt < 2:171927/149‑1 (MQ=255) aGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAAtt < 2:79679/149‑1 (MQ=255) gggCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAAttt > 1:1370549/1‑149 (MQ=255) gCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCg > 2:1297264/1‑149 (MQ=255) gCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATg > 2:4033358/1‑149 (MQ=255) gCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATg < 2:4142400/149‑1 (MQ=255) gTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGcc < 1:4212246/149‑1 (MQ=255) gTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGcc > 2:4764961/1‑149 (MQ=255) gTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGcc > 1:4537518/1‑149 (MQ=255) tttCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCACAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCt < 2:4021741/149‑1 (MQ=255) ttcttcTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTCTTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCtt > 2:3240679/1‑149 (MQ=255) ttcttcTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCtt < 2:2948810/149‑1 (MQ=255) cttctATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCg > 1:2073134/1‑149 (MQ=255) ctATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGAcg > 1:1996963/1‑149 (MQ=255) taGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGAcggcg < 1:4575979/149‑1 (MQ=255) aGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAATCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGAcggcgg > 1:2949802/1‑149 (MQ=255) aGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGAcggcgg > 2:3570875/1‑149 (MQ=255) cGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCg < 1:1327396/149‑1 (MQ=255) aaTGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCgttgt > 1:3521836/1‑149 (MQ=255) aTGTGTAATCATAAGAAAGTCCTGTCTCAATAATTCTTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCgttgtt > 2:3510916/1‑149 (MQ=255) aTGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCgttgtt > 1:3880640/1‑149 (MQ=255) aTGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCgttgtt < 2:4187231/149‑1 (MQ=255) tgtgTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGttt < 2:4287482/149‑1 (MQ=255) aaTCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAatat < 1:1520197/149‑1 (MQ=255) aaTCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAatat < 1:4521544/149‑1 (MQ=255) tCATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcc < 1:601092/149‑1 (MQ=255) tCATAAGAAAGTCCTGTCTCAATAATTATTGCTCAATGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcc < 2:2546104/149‑1 (MQ=255) tCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcc < 2:3046959/149‑1 (MQ=255) tCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcc < 2:833014/149‑1 (MQ=255) cATAAGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcct > 1:1895458/1‑149 (MQ=255) aaGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcctgat < 1:3279572/149‑1 (MQ=255) aGAAAGTCCTGTTTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcctgatc > 2:1183540/1‑149 (MQ=255) aGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcctgatc > 2:2825541/1‑149 (MQ=255) gAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATatcctgatcc < 2:2850754/149‑1 (MQ=255) tCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATATCCTGATCCTGTcc > 1:728221/1‑149 (MQ=255) ccTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATATCCTGATCCTGTCCg > 2:2515092/1‑149 (MQ=255) ccTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATATCCTGATCCTGTCCg > 2:535476/1‑149 (MQ=255) tGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATATCCTGATCCTGTCCggg > 1:4061209/1‑149 (MQ=255) gTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATATCCTGATCCTGTCCGGGa < 2:2586412/149‑1 (MQ=255) | TTTTTTAAATTGCTGCTGGGTTTCCAGCCATTCCGGCGAATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCTCAATAATTATTGCGCAAAGGGATTTTTCGTTTCGTATGACGTGTTATAAAGCGCGTCGGAAATTAAATACTGGTAAATATCATCAACAATTTCGATGCCTTCGACGGCGGCTTTGCGTTGTTTAATATCCTGATCCTGTCCGGGATA > CP009273/540614‑540910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |