| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 560,284 | A→C | 16.1% | I384R (ATA→AGA) | intD ← | DLP12 prophage; putative phage integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 560,284 | 0 | A | C | 16.1% | 550.5 / 124.9 | 248 | I384R (ATA→AGA) | intD | DLP12 prophage; putative phage integrase |
| Reads supporting (aligned to +/- strand): ref base A (89/119); new base C (20/20); total (109/139) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 | |||||||||||
Only 100 of 261 total aligned reads displayed.
TGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTG > CP009273/560136‑560432 | aCCGTATAATTCACGCGATTACACCGCTTTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTtcta < 2:3755352/149‑1 (MQ=255) aCCGTATAACTCACGCGATGACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTtata < 1:1639627/149‑1 (MQ=255) ataATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATAtcctc < 2:2527902/149‑1 (MQ=255) taATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATAtcctcc < 1:2879809/149‑1 (MQ=255) aCGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAAtt < 2:3000578/149‑1 (MQ=255) gcgATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTc < 1:3050744/149‑1 (MQ=255) gATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCAAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCag < 1:4499315/149‑1 (MQ=255) aTTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCaga > 2:2939472/1‑149 (MQ=255) aTTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCaga < 1:4061290/149‑1 (MQ=255) tACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTNTTTATATCCTCCATAATTTCAGAGt > 1:853447/1‑149 (MQ=255) cacCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTgg < 2:1143973/149‑1 (MQ=255) ccGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGa < 1:933696/149‑1 (MQ=255) cGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGAc < 2:3828894/149‑1 (MQ=255) cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACat > 2:927404/1‑149 (MQ=255) cATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACat < 1:1423360/149‑1 (MQ=255) ttGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGACTCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACatat > 2:3803739/1‑149 (MQ=255) tGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATAtt < 2:3201206/149‑1 (MQ=255) gTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTGCTGTATATCCTCCATAATTTCAGAGTGGGACATATTTggg > 2:2836211/1‑149 (MQ=255) gTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTCCAGGGCGCGCCATTACAATTCAATCAGTTACGCCATCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTggg > 1:3985004/1‑149 (MQ=255) tATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGa < 1:3557091/149‑1 (MQ=255) tATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGa < 2:3106080/149‑1 (MQ=255) aTCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGAc < 2:3332125/149‑1 (MQ=255) aTCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGAc > 1:3005074/1‑149 (MQ=255) cAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACAt < 2:4342370/149‑1 (MQ=255) cAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACAt < 2:1952949/149‑1 (MQ=255) cAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACAt < 2:1498999/149‑1 (MQ=255) cAACGCGCCCTGAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACAt < 2:4632761/149‑1 (MQ=255) aaCGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACAtt < 1:3131749/149‑1 (MQ=255) aCGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTa > 2:3499310/1‑149 (MQ=255) gcgcCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATc < 1:1293081/149‑1 (MQ=255) cccTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCAcc > 1:1849219/1‑149 (MQ=255) ccTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCa < 2:65668/149‑1 (MQ=255) gCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAAt < 1:4486938/149‑1 (MQ=255) cTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATg < 1:3400119/149‑1 (MQ=255) cTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATg < 2:3081906/149‑1 (MQ=255) cTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATg < 2:4048285/149‑1 (MQ=255) cTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATg > 2:4383419/1‑149 (MQ=255) tCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgt < 1:4343037/149‑1 (MQ=255) tCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgt > 1:3506545/1‑149 (MQ=255) cAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgtc < 2:2155575/149‑1 (MQ=255) aGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgtcg > 1:4402484/1‑149 (MQ=255) gTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgtcgt > 2:3645490/1‑149 (MQ=255) ttGTATAGAGCAACGACCTTCTATGTCGTGGGCCGCAGGTTCGAATCCTGCATGGCGAGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgtcgtc < 2:1239784/149‑1 (MQ=255) ttGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATgtcgtc > 1:1050388/1‑149 (MQ=255) tGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCt < 2:2685910/149‑1 (MQ=255) tAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTAttt < 2:2614458/149‑1 (MQ=255) agagCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTAtttt > 1:2367082/1‑149 (MQ=255) gagCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTc < 1:1722905/149‑1 (MQ=255) gagCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTc > 1:2065692/1‑149 (MQ=255) gagCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTc < 2:4437336/149‑1 (MQ=255) gCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCt < 1:2643653/149‑1 (MQ=255) gCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCt < 2:1369736/149‑1 (MQ=255) aCGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGc > 2:2228086/1‑149 (MQ=255) aCGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGc > 1:124099/1‑149 (MQ=255) aCGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGc > 1:3963578/1‑149 (MQ=255) ttCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGctc < 1:1380795/149‑1 (MQ=255) aaGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTc < 2:2350660/149‑1 (MQ=255) tCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCaaa < 2:1783115/149‑1 (MQ=255) tCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCaaa < 1:1869632/149‑1 (MQ=255) tGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGa < 1:3542084/149‑1 (MQ=255) gggCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGTGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGAt < 1:1464631/149‑1 (MQ=255) ggCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGAtt > 2:2679052/1‑149 (MQ=255) ggTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCa < 1:2042333/149‑1 (MQ=255) gTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCaa > 2:4000355/1‑149 (MQ=255) gTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAACTATTAGGCGCaa > 1:3789490/1‑149 (MQ=255) tCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAgg < 1:2476597/149‑1 (MQ=255) aaTCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGa > 1:577079/1‑149 (MQ=255) aaTCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTATTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGa < 1:167471/149‑1 (MQ=255) aTCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTATGCGCAAGGTGAg > 1:4131797/1‑149 (MQ=255) aTCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAg < 2:1317402/149‑1 (MQ=255) ccTGCAGGGCGCGCCATTACAAGTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCa < 2:3460892/149‑1 (MQ=255) aGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCATTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATTTCGTCTATTTTCCTCGCATGCTCGGTCAAATGATTAGGCGCAAGGTGAGCATACCt < 2:2022332/149‑1 (MQ=255) gggCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTa > 2:4250963/1‑149 (MQ=255) ccATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCa > 1:696876/1‑149 (MQ=255) ccATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCa > 1:4696911/1‑149 (MQ=255) cATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCAt > 1:3176370/1‑149 (MQ=255) cATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCAt < 2:553004/149‑1 (MQ=255) cATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCAt > 1:1188732/1‑149 (MQ=255) cATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCAt > 1:2858025/1‑149 (MQ=255) aTTACAATTCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCAtt < 1:3321525/149‑1 (MQ=255) aTTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCAtt > 1:4614485/1‑149 (MQ=255) ttACAATTCAATCAGTTACGCCTTCATTATATACTCCATAAATTCAGAGTGGGACATATTTGGGACAAAATCACCAAAAAAGTCGTCAAATTTCCTCGCATGCTCTGACAAAAGATTAGGCGCAAGGTGATCATACCTACGAACCAtat > 2:1407338/1‑147 (MQ=255) aCAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACATACGAACCATTTCt > 1:961862/1‑149 (MQ=255) cAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTa > 2:3727923/1‑149 (MQ=255) aTTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATg > 1:4020199/1‑149 (MQ=255) tCAATCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGa > 2:386972/1‑149 (MQ=255) aaTCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACt > 2:4196663/1‑149 (MQ=255) aTCAGTTACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTc > 1:2064975/1‑149 (MQ=255) tCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGTACTcc > 2:2981763/1‑149 (MQ=255) tCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTcc > 1:4242678/1‑149 (MQ=255) aGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCa > 1:1583006/1‑149 (MQ=255) gTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTGTATTTTACTCGCATTCTCTGTCAAATGATTAGGCGCAAGGTGAGCATAACTACGAACCAATTCTATGGACTCCCAt > 1:3696329/1‑149 (MQ=255) gTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCAt < 2:4473908/149‑1 (MQ=255) ttACGCCTTCTTTCTATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATc > 1:4764574/1‑149 (MQ=255) ttACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATc > 1:3193392/1‑149 (MQ=255) gCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGcc > 1:1765845/1‑149 (MQ=255) ccTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGccc > 2:4223921/1‑149 (MQ=255) cttTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCAttt < 1:3598463/149‑1 (MQ=255) atatCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTg < 2:1555375/149‑1 (MQ=255) atatCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTg > 2:2391052/1‑149 (MQ=255) | TGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTACAATTCAATCAGTTACGCCTTCTTTATATCCTCCATAATTTCAGAGTGGGACATATTTGGGACATTATCACCAAAAATGTCGTCTATTTTCCTCGCATGCTCTGTCAAATGATTAGGCGCAAGGTGAGCATACCTACGAACCATTTCTATGGACTCCCATCCGCCCATTTCCTG > CP009273/560136‑560432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |