| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 955,568 | A→T | 100% | intergenic (+17/‑152) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 955,568 | 0 | A | T | 97.9% | 932.6 / 4.7 | 274 | intergenic (+17/‑152) | aroA/ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
| Reads supporting (aligned to +/- strand): ref base A (3/3); new base T (109/159); total (112/162) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 283 total aligned reads displayed.
CCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATG > CP009273/955422‑955713 | ccGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCaattaa < 1:3201456/149‑1 (MQ=255)ccGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTAGTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCaattaa < 1:861839/149‑1 (MQ=255) gATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAg < 2:3533928/149‑1 (MQ=255) cGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCaaa < 2:3740409/149‑1 (MQ=255) gATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAt > 2:4297381/1‑149 (MQ=255) gATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAt < 2:1562498/149‑1 (MQ=255) aTGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtc < 2:2319587/149‑1 (MQ=255) gtgtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtctt > 2:460935/1‑149 (MQ=255) gtgtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtctt < 2:39925/149‑1 (MQ=255) tgtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAAtcttt < 2:4469327/149‑1 (MQ=255) gtTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtctttc < 2:625302/149‑1 (MQ=255) tttCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtctttct > 1:1094665/1‑149 (MQ=255) tttCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAAtctttct < 1:731406/149‑1 (MQ=255) ctcGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCACATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTa < 2:4091148/149‑1 (MQ=255) tcGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTAt > 1:3005164/1‑149 (MQ=255) cGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATc < 2:875853/149‑1 (MQ=255) gCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTc < 2:1266186/149‑1 (MQ=255) ttGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGc > 1:2520044/1‑149 (MQ=255) cAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACAt < 1:2896579/149‑1 (MQ=255) cAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACAt > 1:4524306/1‑149 (MQ=255) cAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACAt > 1:1723112/1‑149 (MQ=255) gATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTg > 1:4181331/1‑149 (MQ=255) tACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCCATTAATAGCCAAATCTGTCTTTATCAAAACGTCGGCACATTGTc > 2:3705368/1‑149 (MQ=255) tACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTc < 1:4633861/149‑1 (MQ=255) tACACCAGTGAAGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTc < 1:3450847/149‑1 (MQ=255) acacCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCg < 2:3241011/149‑1 (MQ=255) cacCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCgg > 1:3739189/1‑149 (MQ=255) aGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑tt > 2:1103897/1‑149 (MQ=255) gTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑ttt > 1:4091632/1‑149 (MQ=255) tGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑tttt > 2:3449662/1‑149 (MQ=255) gACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑ttttt < 1:545045/149‑1 (MQ=255) aCGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑tttttt < 2:3802451/149‑1 (MQ=255) cGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑ttttttt < 2:3917856/149‑1 (MQ=255) aTTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTc > 2:1406322/1‑149 (MQ=255) aTTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTc < 1:1406053/149‑1 (MQ=255) ttGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAggta > 1:936592/1‑147 (MQ=255) tCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTtg < 1:2240805/149‑1 (MQ=255) cccAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTtgt < 1:3515033/149‑1 (MQ=255) ccAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCTGCG‑TTTTTTTTCGGACCTtgtg < 1:3055904/149‑1 (MQ=255) aaaTGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCTtgtgtg > 1:2601262/1‑147 (MQ=255) aaaTGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCTTGTGAg > 1:323548/1‑149 (MQ=255) aTGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTc < 1:3550809/149‑1 (MQ=255) tGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCa < 1:4340416/149‑1 (MQ=255) aCGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCAttt < 1:2144396/149‑1 (MQ=255) cGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGTATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCAtttt < 2:2499141/149‑1 (MQ=255) cGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCAtttt < 1:196287/149‑1 (MQ=255) ccAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGTCCATTTGAGTCATTTTTAt > 1:4045772/1‑149 (MQ=255) cAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGAtt > 2:1169395/1‑149 (MQ=255) aaaaCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTa < 1:1621956/149‑1 (MQ=255) aaaCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTaa > 2:3662644/1‑149 (MQ=255) aaaCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGAACATGTGAGTAAATTTGATTaa > 1:4291855/1‑149 (MQ=255) aaaCATGTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTaa < 2:4771963/149‑1 (MQ=255) aaCATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAAt > 1:2247060/1‑149 (MQ=255) cATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TGTTTTTTAGGACCGTGTGTGTCATTTTGATTAATgg > 2:470600/1‑149 (MQ=255) aTTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCTTGTGAGTCATTTTGATTAATGGt > 2:1094739/1‑149 (MQ=255) ttCCGGATTAATTCGACCCGGTGGCGCGGTTTACCCAGGCATCCTGAATGCACAACGGGCAAATAATACCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTa < 1:142354/149‑1 (MQ=255) tCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCATGTGAGTCATTTTGATTAATTGTAGc > 1:2045486/1‑149 (MQ=255) ccGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCg > 2:1920796/1‑149 (MQ=255) cGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGt < 2:3657312/149‑1 (MQ=255) gATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCg > 2:1059411/1‑149 (MQ=255) attattTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc > 2:2603314/1‑149 (MQ=255) attattTCGAGCAGCTGGCGAGGATTAGCCAGGCAGCCTGAATGAACAACGGGAAATTAATAGCAAAATCTTTCTTTATCAAAACGTCGGAACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc < 1:3355829/149‑1 (MQ=255) ttattTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGTGTCATTTTGTTTAATTGTAGCGTAGCt > 2:2793682/1‑149 (MQ=255) tttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGt < 2:4233845/149‑1 (MQ=255) tttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGt < 2:840022/149‑1 (MQ=255) tttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCATGGGAGTCATTTTGATTAATGGTAGCGTCGCTTGt > 2:2367974/1‑149 (MQ=255) gAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAAt < 2:1933284/149‑1 (MQ=255) gAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCAATTTGATTAATTGTAGCGTCGCGTGTCaaa > 1:4360819/1‑148 (MQ=255) agcagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTTATTAATGGTAGCGTCGCGTGTCAATg > 2:599895/1‑149 (MQ=255) agcagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATg < 2:2810821/149‑1 (MQ=255) agcagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGGGAGTCATTTTGATTAATGGTAGCGTCGCTTGTAAATg > 2:2170709/1‑149 (MQ=255) cagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCATGTGAGTCATTTTTTTTAATGGTAGCGTCGCGTGTAAATGtt > 1:2901212/1‑148 (MQ=255) tGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgtt < 1:3751479/149‑1 (MQ=255) tGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgtt < 2:2060276/149‑1 (MQ=255) cgcgGATTAGCCAGGCAGCCTTAATGAACAACGGGCAATTAATAGACAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgtt < 2:4533834/149‑1 (MQ=255) cgcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgtt < 2:4219230/149‑1 (MQ=255) gcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGttgttg < 1:1229042/149‑1 (MQ=255) ggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGAt < 1:1670188/149‑1 (MQ=255) gATTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa < 1:2616365/149‑1 (MQ=255) aTTAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATAc < 1:4019689/149‑1 (MQ=255) tAGCCAGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACat < 2:1720831/149‑1 (MQ=255) aGGCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAatat < 1:3126380/149‑1 (MQ=255) ggCAGCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAtt < 2:1185182/149‑1 (MQ=255) gCCTGAATGAACAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtata < 2:4072404/149‑1 (MQ=255) gaatgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATg < 1:3204237/149‑1 (MQ=255) atgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAt < 1:4297381/149‑1 (MQ=255) tgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAtt < 1:3973834/149‑1 (MQ=255) tgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAAAGTAAGTTGTTGATACATAATATTTATATATGAtt > 2:4356509/1‑149 (MQ=255) tgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGGGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAACTTGGTGATACATAAATATTATAAATGAtt > 2:4357252/1‑149 (MQ=255) tgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCATGTGAGTCAATTTGATTAATGGTAGCGTCGCTTGTCAAAGTAAGTTGTTGATACAAAATATTTATATATGAtt > 2:1502200/1‑149 (MQ=255) tgaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCAGACAAATTGAGGAAATTTTATAAATTGTATCGTACCTTGTACAAGTACTTTTTTTATAAAAAAAAATTATATattatt > 1:1540553/1‑149 (MQ=255) gaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTa < 1:2277294/149‑1 (MQ=255) gaaCAACGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGTTACATAAAATTTatatattttta > 2:179085/1‑144 (MQ=255) caacGGGCAATTAATCGCCAAATCTTTCTGTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCGTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATc < 1:3278746/149‑1 (MQ=255) cGGGCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCGTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAAc < 2:532555/149‑1 (MQ=255) cGGGCAATTAATAGCAAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAAc < 1:820069/149‑1 (MQ=255) gggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACg < 2:2996539/149‑1 (MQ=255) ggCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACgg < 1:645053/149‑1 (MQ=255) ggCAATTAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTAGGACCATTTGAGTCAATTTTATTAAAGGTAGCGTCGCGTGTGAAGGTAAGTTTTTTTTAAAAAAAATTTATATATTATTAAAAAACgg > 1:3857997/1‑149 (MQ=255) aattaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGgatg < 1:2966623/149‑1 (MQ=255) | CCGGATGGCGATGTGTTTCTCGCTGGTGGCGTTGTCAGATACACCAGTGACGATTCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATG > CP009273/955422‑955713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |