| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,145,840 | C→A | 8.4% | I219I (ATC→ATA) | fabD → | malonyl‑CoA‑[acyl‑carrier‑protein] transacylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,145,840 | 0 | C | A | 8.4% | 1125.9 / 47.1 | 308 | I219I (ATC→ATA) | fabD | malonyl‑CoA‑[acyl‑carrier‑protein] transacylase |
| Reads supporting (aligned to +/- strand): ref base C (124/158); new base A (15/11); total (139/169) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
Only 100 of 308 total aligned reads displayed.
GGTCATAAAGAAGCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATGGCAGCGCAAGGC > CP009273/1145694‑1145987 | ggTCATAAAGAAGCGGTTGAGCGTGCTGGCGCTGCCTGTGAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑Ac < 1:4483266/149‑1 (MQ=255) tCATAAAGAAGCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCt > 2:1661184/1‑149 (MQ=255) tCATAAAGAAGCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCt > 1:2135877/1‑149 (MQ=255) tCATAAAGAAGCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATA‑ACCt > 2:3969224/1‑149 (MQ=255) aaaGAAGCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTaa < 1:21561/149‑1 (MQ=255) aagaagCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAAc < 1:427892/149‑1 (MQ=255) gaagCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATCAACATTTAACg > 1:1995404/1‑149 (MQ=255) gCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCAcc > 1:1002610/1‑149 (MQ=255) gCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCAcc > 2:2475783/1‑149 (MQ=255) gCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCAcc < 2:1072321/149‑1 (MQ=255) ggTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCaa < 1:1312882/149‑1 (MQ=255) gTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAAc > 2:2585856/1‑149 (MQ=255) ttGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACa < 2:2128425/149‑1 (MQ=255) tGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATA‑ACCTTTAACGCACCAACAg > 1:1755824/1‑149 (MQ=255) aGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGtt > 1:1594133/1‑149 (MQ=255) gcgcTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTtgtg < 2:2861667/149‑1 (MQ=255) gcgcTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTtgtg < 2:3277358/149‑1 (MQ=255) gcTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATA‑ACCTTTAACGCACCAACAGTTCCTGTTGTGaa < 1:1293302/149‑1 (MQ=255) tGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATa < 1:1048495/149‑1 (MQ=255) gCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATaa < 1:996869/149‑1 (MQ=255) gCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATA‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATaa < 2:2081830/149‑1 (MQ=255) tGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGt < 2:1181468/149‑1 (MQ=255) tGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGt < 1:572748/149‑1 (MQ=255) aaGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGAt < 2:743787/149‑1 (MQ=255) gcggcgGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGAtgt < 2:89284/149‑1 (MQ=255) gcggcgGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGAtgt < 1:1500017/149‑1 (MQ=255) cggcggGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGAtgtg < 1:886060/149‑1 (MQ=255) ggcgggcgCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGa > 2:4673568/1‑149 (MQ=255) gcgggcgCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGaa < 2:4745836/149‑1 (MQ=255) cgggcgCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGaaa < 1:2637749/149‑1 (MQ=255) gggcgCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAAt < 1:2290548/149‑1 (MQ=255) cAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGaa > 2:83264/1‑149 (MQ=255) cAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGaa < 2:2696989/149‑1 (MQ=255) aaaaCGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGaaa < 1:2066214/149‑1 (MQ=255) aaaCGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAAc < 2:2991646/149‑1 (MQ=255) gcTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCCATGGTg > 1:4194857/1‑149 (MQ=255) cTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGa < 2:2635999/149‑1 (MQ=255) cTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGa < 2:1581983/149‑1 (MQ=255) cTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGa < 2:374281/149‑1 (MQ=255) tGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGCTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGAt > 2:502900/1‑149 (MQ=255) ccGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGc < 2:4419166/149‑1 (MQ=255) ccGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGc < 2:4395079/149‑1 (MQ=255) cGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGcc > 1:4680917/1‑149 (MQ=255) cGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGcc < 1:3298073/149‑1 (MQ=255) cGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGcc < 2:578098/149‑1 (MQ=255) cGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGcc < 2:3774326/149‑1 (MQ=255) cGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGcc > 2:916743/1‑149 (MQ=255) gTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCa > 1:2747741/1‑149 (MQ=255) gTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCa < 1:2827773/149‑1 (MQ=255) tACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATA‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATc > 1:3983084/1‑149 (MQ=255) cAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGt < 1:3358354/149‑1 (MQ=255) cAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGt > 2:1874617/1‑149 (MQ=255) tGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGAc < 1:4007858/149‑1 (MQ=255) tGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGAc < 1:4498026/149‑1 (MQ=255) gCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCa > 1:1407925/1‑149 (MQ=255) cGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCAc < 2:2182464/149‑1 (MQ=255) gTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACt < 2:2370932/149‑1 (MQ=255) gTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACt < 2:3473896/149‑1 (MQ=255) tACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTg < 1:2585779/149‑1 (MQ=255) tACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTg > 2:3917648/1‑149 (MQ=255) ccGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGt < 1:4371908/149‑1 (MQ=255) tcACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTc < 2:1691133/149‑1 (MQ=255) cACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATA‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCa > 2:2842161/1‑149 (MQ=255) aCTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAg > 2:1205641/1‑149 (MQ=255) aCTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAg > 2:4100106/1‑149 (MQ=255) aCTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAg > 2:3047074/1‑149 (MQ=255) gtgCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTg < 2:4587723/149‑1 (MQ=255) gatgaAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAAcc > 2:3522003/1‑149 (MQ=255) atgaAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAAccc > 1:3474721/1‑149 (MQ=255) atgaAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAAccc < 1:2423772/149‑1 (MQ=255) tgaAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCg < 1:2959109/149‑1 (MQ=255) aaaCCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGt > 2:343465/1‑149 (MQ=255) aCCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTc > 1:1024592/1‑149 (MQ=255) aCCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTc > 1:3414396/1‑149 (MQ=255) cagcagCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAg > 1:471382/1‑149 (MQ=255) gcagcCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTg > 2:4049290/1‑149 (MQ=255) gcagcCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTg < 2:1285255/149‑1 (MQ=255) cagcCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTgg < 2:1032422/149‑1 (MQ=255) gcCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGAc < 2:4725719/149‑1 (MQ=255) gACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGaa > 1:3575869/1‑149 (MQ=255) gACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGaa > 1:654906/1‑149 (MQ=255) aCAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAg > 2:3960298/1‑149 (MQ=255) aCAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAg > 1:493287/1‑149 (MQ=255) aCAAACTGGCAGTAGAATTAGCGAAAATA‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAg > 2:315320/1‑149 (MQ=255) aaaCTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTc < 2:4534877/149‑1 (MQ=255) aaCTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCt > 1:3033153/1‑149 (MQ=255) aaCTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCt > 2:1988834/1‑149 (MQ=255) aCTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTg < 2:3615279/149‑1 (MQ=255) ggCAGTAGAATTAGCGAAAATC‑ACATTTAACGAAACAACAGTTCCTTTTGTTAATAACGATGATGTGAAATGCGAAAACAAAGGTGATGCCATACTTGACTCACTTGTACGTCAGTTGTATAACCCGGTTCAGTGTACGAAGTCTGtag > 1:1111517/1‑147 (MQ=255) tAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTAc < 1:3971653/149‑1 (MQ=255) gAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACAt < 1:120991/149‑1 (MQ=255) aaTTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATg > 1:4148119/1‑149 (MQ=255) aaTTAGCGAAAATA‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATg > 1:2381468/1‑149 (MQ=255) aTTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATgg > 2:2888673/1‑149 (MQ=255) aTTAGCGAAAATA‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATgg > 2:4343272/1‑149 (MQ=255) tAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATGGCa > 2:1338993/1‑149 (MQ=255) gCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATGGCAgc > 2:1476430/1‑149 (MQ=255) aaaTC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATGGCAGCGCaa < 1:1774900/149‑1 (MQ=255) aTC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATGGCAGCGCAAgg > 2:1772802/1‑149 (MQ=255) aTC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATGGCAGCGCAAgg > 2:2328344/1‑149 (MQ=255) | GGTCATAAAGAAGCGGTTGAGCGTGCTGGCGCTGCCTGTAAAGCGGCGGGCGCAAAACGCGCGCTGCCGTTACCAGTGAGCGTACCGTCTCACTGTGCGCTGATGAAACCAGCAGCCGACAAACTGGCAGTAGAATTAGCGAAAATC‑ACCTTTAACGCACCAACAGTTCCTGTTGTGAATAACGTTGATGTGAAATGCGAAACCAATGGTGATGCCATCCGTGACGCACTGGTACGTCAGTTGTATAACCCGGTTCAGTGGACGAAGTCTGTTGAGTACATGGCAGCGCAAGGC > CP009273/1145694‑1145987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |