| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,477,570 | G→A | 7.4% | D85N (GAC→AAC) | hrpA → | putative ATP‑dependent helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,477,570 | 0 | G | A | 7.4% | 956.3 / 42.9 | 289 | D85N (GAC→AAC) | hrpA | putative ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): ref base G (128/135); new base A (11/10); total (139/150) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-01 | |||||||||||
Only 100 of 296 total aligned reads displayed.
GAAGGTTAAAAATCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGCGTCGTCTGGC > CP009273/1477422‑1477718 | gaagGTTAAAAATCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAgg > 2:4012657/1‑149 (MQ=255) aagGTTAAAAATCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGa > 1:1440395/1‑149 (MQ=255) ggTTAAAAATCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACa < 2:2618808/149‑1 (MQ=255) tAAAAATCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATtc < 1:4068855/149‑1 (MQ=255) aaaaaTCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATtct < 1:1849325/149‑1 (MQ=255) aaaaTCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATtctc < 2:3788794/149‑1 (MQ=255) aaTCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGa < 1:4234337/149‑1 (MQ=255) aaTCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGa > 1:2091247/1‑149 (MQ=255) aaTCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGa < 1:1597530/149‑1 (MQ=255) aTCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGaa < 1:3700373/149‑1 (MQ=255) tGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGa > 1:1963141/1‑149 (MQ=255) gATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGAt < 2:3494383/149‑1 (MQ=255) aTGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGAtt < 1:527537/149‑1 (MQ=255) aTGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGAtt < 1:2708832/149‑1 (MQ=255) aTGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGAACATTCTCGAAGCGAtt < 1:4746641/149‑1 (MQ=255) tGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTc > 1:3427216/1‑149 (MQ=255) tGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTc < 1:1360308/149‑1 (MQ=255) acaacaGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGACTCGTg > 1:1795001/1‑149 (MQ=255) caacaGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGa > 2:3662508/1‑149 (MQ=255) caacaGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGa > 2:3418337/1‑149 (MQ=255) acaGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATc < 1:3055206/149‑1 (MQ=255) aGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCAc < 2:3170101/149‑1 (MQ=255) ggCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCAcc > 1:4787936/1‑149 (MQ=255) aTTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAggt < 2:3142417/149‑1 (MQ=255) ttttCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAggtg < 1:3217324/149‑1 (MQ=255) tttCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAggtgg > 1:400694/1‑149 (MQ=255) ttCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAggtggt < 1:4427662/149‑1 (MQ=255) tCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGgtggtg < 2:1201995/149‑1 (MQ=255) ccAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGa < 2:1174110/149‑1 (MQ=255) cAGGAGATGGCGAAATAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGAt < 1:35230/149‑1 (MQ=255) gagaTGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGAtcgt < 2:2341716/149‑1 (MQ=255) gagaTGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGAtcgt < 2:979594/149‑1 (MQ=255) gagaTGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGAtcgt > 1:1463881/1‑149 (MQ=255) agaTGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGAtcgtc > 2:2785771/1‑149 (MQ=255) agaTGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGAtcgtc > 2:2968930/1‑149 (MQ=255) tGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGcc > 1:1833384/1‑149 (MQ=255) ggCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCg > 1:1117335/1‑149 (MQ=255) gAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGAGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCgggg < 2:2694285/149‑1 (MQ=255) aaaGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACACTTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGa > 1:3503032/1‑149 (MQ=255) aaaGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGa > 1:4398467/1‑149 (MQ=255) aaGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGaa > 2:2467066/1‑149 (MQ=255) agaTTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACg > 2:4716359/1‑149 (MQ=255) tGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGtt < 2:114849/149‑1 (MQ=255) gACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTc < 2:1885574/149‑1 (MQ=255) gACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTGACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTc < 2:4275503/149‑1 (MQ=255) cAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTgg < 1:3824868/149‑1 (MQ=255) aGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGt < 1:2341039/149‑1 (MQ=255) gcggcAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTaa < 2:3356455/149‑1 (MQ=255) ggcAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTaaaa < 1:1008689/149‑1 (MQ=255) ggcAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTaaaa < 2:497065/149‑1 (MQ=255) aGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGa > 2:2836689/1‑149 (MQ=255) aGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGa > 2:4064794/1‑149 (MQ=255) gAAAGTCCTGCTGCGTGAAGCGGCACGACCGTAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTc < 2:4192425/149‑1 (MQ=255) tCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAAGTGACCGG‑TTAGTCAGAACAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTa > 1:326515/1‑149 (MQ=255) ctgctgCTTTAAGCGGCACGACCGGAAATTACTTATCATGACATTTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTTATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGTTAAAACGACTCAGTTAcc < 2:4583730/149‑1 (MQ=255) ctgctgCGTGATGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGTAAACGGGTTCTGGTAAAACGACTCAGTTAcc < 2:4591694/149‑1 (MQ=255) ctgatgCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTAcc > 2:4606463/1‑149 (MQ=255) tgctgcGTGAAGCGGCACTACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTTATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCg < 2:1978591/149‑1 (MQ=255) gcGTTAAGCGGCACGACCGGAAATTACTTATCCTGAAAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGaaaa < 2:2213174/149‑1 (MQ=255) gcGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGaaaa > 1:1670315/1‑149 (MQ=255) gcGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGaaaa < 2:2370073/149‑1 (MQ=255) gTGACGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACTGGACATTCTCGAAGCGATTCGTTATCACCAGGTGGGGATCGTCGCCGGGGAAACGGGTTCGGGTAAAACGACTCAGTTACCGAAAATc < 2:4145833/149‑1 (MQ=255) aaGCGGCACGCCCGGAAATTACTGCTCCTGACATTTTACCGG‑TTTGTCAGACAACACTGGACATTCTCGACGCGCTTCGTGATCACCTGGGGGTGATCGGCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGt < 2:3610267/149‑1 (MQ=255) aaGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGt > 1:2228710/1‑149 (MQ=255) cGGCACGACCGGAAATTACTTAACCGGACAATTTACCGG‑TTAGTCAGAAAAAACTGGACATTCACGACGCGTTTCGTGATCACCCGGTGGTGATCGTCGCCGGGGAAAGGGGTTCGGGTAAAACGACTCAGTTACCGAAAATCTGTATg < 1:650902/149‑1 (MQ=255) ggCCCGACCGGAAATTACTTATCCGGACAAGTTCCCGG‑TGTGTCAGAACACACCGGACCGTCGGGATGCGATTCGTGCTCACCAGGGGGTGAGCGTCGCCGGGGATCCGGGTTCGGGTAAAACGACTCAGTTACCGAAACTCTGTATgg < 2:784566/149‑1 (MQ=255) aCCGTAAATTACTTATCCTTAAATTTTCCCGG‑TTAGTCATAAAAAACTGTACTTTCTCGACGCGATTCGTGATCACCCGGTGGTTATCGTCGCCGGGGAAAGGGGTTCTGTTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTgg < 1:872132/149‑1 (MQ=255) aaTTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGcgcg > 1:868946/1‑149 (MQ=255) tttACTTATCCTGAAAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCCGGTGGTGATCGTCGCCGGGTAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCgg < 1:4577399/148‑1 (MQ=255) aTTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCgg > 2:3012358/1‑149 (MQ=255) tttATCATGAAAATTTACCGG‑TTATTCAGAAAAAACAGGACATGCTCTAAGCGATTCGTGATCACCAGGTGGTGTTGGTCGCCGGGGAAAGGGGTTCTGTTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGAtt < 2:4492143/148‑1 (MQ=255) ttATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTa > 1:964934/1‑149 (MQ=255) aTCCTGACAATTTACCGG‑TTAGTCAGAAAAAACTGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCGGGGGAAAGGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTaaa < 1:1909000/149‑1 (MQ=255) aTCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTaaa > 1:4659573/1‑149 (MQ=255) aTCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTaaa > 2:3957504/1‑149 (MQ=255) aTCCTGAAAATTTACCGT‑TTAGTCATAAAAAACAGGACATTCTCGAAGCTATTCGTGATCACCTGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTaaa < 1:2489811/149‑1 (MQ=255) tCCTGACATTTTACCGG‑TTAGTCAGAAAAAACCGGACATTCTCGAAGCGATTCGTGATCACCCGGTGGTGATCGTCGCCGGGGAAAGGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAg < 2:2029876/149‑1 (MQ=255) tCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAg > 2:455678/1‑149 (MQ=255) tCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAg > 1:2579211/1‑149 (MQ=255) tGAAAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGCTTCGTGATCACCAGGTGGGGATCGTCGCCGGGTAACCGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGAc < 2:3262200/149‑1 (MQ=255) gaaaaTTTACGGG‑TTAGACAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCTGGTGGTTATCGTCGCCGGGTAAAGGGGTTCTGTAAACACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACt < 1:1760109/146‑1 (MQ=255) attttACCGG‑TTCGTCAGAAAAAACAGGCCATTCTCGAAGCGATTCGTGATCACCCGGTGGGGATCGTCGCCGGGGAACCGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGAt < 1:288337/147‑1 (MQ=255) aaTTTACCGT‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCGGTATGGAGCTGGGGCGCGGGATTAAAGGACTGAt < 2:61462/149‑1 (MQ=255) aTTTTCCGGTTTAGTCATAAAAAACCGGAACTGCTCTACGCGAGTCGTGATCACCTGGGGGTGATGGGCGCCGGGGAACGGGGTTGTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGAt < 1:2042489/149‑1 (MQ=255) aTTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATc > 1:3221444/1‑149 (MQ=255) tttACCGG‑TTATTCACAAAAAACAGGACATTCCCGATGCGATTCGTGATCACCAGGTGGTGATCGTCGCGGGGTAAACGGGTAGTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCg < 1:533716/149‑1 (MQ=255) tttACCGG‑TTAGTCAGAAAAAACAGAACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCg > 1:1054858/1‑149 (MQ=255) aGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCT‑GGGCGCGGGATTAAAGGACTGATCGGCCATACCCAg > 2:216009/1‑149 (MQ=255) tCAGAAAAAACAGAACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGc > 2:3126035/1‑149 (MQ=255) gAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCcgc > 1:1380158/1‑149 (MQ=255) aaaaaaCAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCcgcg > 1:2182315/1‑149 (MQ=255) aaaaaCAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGcgt > 2:1365024/1‑149 (MQ=255) aaaaCAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTAACGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGcgtc > 1:3932975/1‑149 (MQ=255) aaCAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGcgtcgt > 2:3457870/1‑149 (MQ=255) aCAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGCgtcgtc < 2:1827839/149‑1 (MQ=255) cAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGCGTCGTCt > 2:292213/1‑149 (MQ=255) cAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGCGTCGTCt > 2:1745703/1‑149 (MQ=255) aGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGCGTCGTCTg > 2:3575528/1‑149 (MQ=255) aGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGCGTCGTCTg > 2:1132629/1‑149 (MQ=255) gACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGCGTCGTCTggc > 2:4651221/1‑149 (MQ=255) | GAAGGTTAAAAATCCTGATGCACAACAGGCCATTTTCCAGGAGATGGCGAAAGAGATTGACCAGGCGGCAGGGAAAGTCCTGCTGCGTGAAGCGGCACGACCGGAAATTACTTATCCTGACAATTTACCGG‑TTAGTCAGAAAAAACAGGACATTCTCGAAGCGATTCGTGATCACCAGGTGGTGATCGTCGCCGGGGAAACGGGTTCTGGTAAAACGACTCAGTTACCGAAAATCTGTATGGAGCTGGGGCGCGGGATTAAAGGACTGATCGGCCATACCCAGCCGCGTCGTCTGGC > CP009273/1477422‑1477718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |