Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,503,324 T→A 10.5% intergenic (‑3/‑219) yncJ ← / → hicA uncharacterized protein/mRNA interferase toxin of the HicAB toxin‑antitoxin system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,503,3240TA10.5% 925.6 / 76.3 310intergenic (‑3/‑219)yncJ/hicAuncharacterized protein/mRNA interferase toxin of the HicAB toxin‑antitoxin system
Reads supporting (aligned to +/- strand):  ref base T (115/161);  new base A (15/18);  total (130/180)
Fisher's exact test for biased strand distribution p-value = 7.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 312 total aligned reads displayed.

GCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGCTATTTT  >  CP009273/1503177‑1503472
                                                                                                                                                   |                                                                                                                                                    
gCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTg                                                                                                                                                     <  1:3789185/149‑1 (MQ=255)
 cAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGc                                                                                                                                                    >  1:1939956/1‑149 (MQ=255)
    ttCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCAc                                                                                                                                                 >  1:4034660/1‑149 (MQ=255)
     tCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCAcc                                                                                                                                                <  1:4455556/149‑1 (MQ=255)
       aTCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCtt                                                                                                                                              >  1:302526/1‑149 (MQ=255)
        tCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCttt                                                                                                                                             >  1:165541/1‑149 (MQ=255)
         cGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCtttt                                                                                                                                            <  1:2223978/149‑1 (MQ=255)
          gCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCttttt                                                                                                                                           <  1:1015923/149‑1 (MQ=255)
          gCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCttttc                                                                                                                                           <  1:1573227/149‑2 (MQ=255)
           cTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTc                                                                                                                                          <  2:199690/149‑1 (MQ=255)
                cGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTAcc                                                                                                                                     <  2:1682639/149‑1 (MQ=255)
                 gCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCt                                                                                                                                    <  1:746306/149‑1 (MQ=255)
                   ttCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCttt                                                                                                                                  <  2:1629063/149‑1 (MQ=255)
                   ttCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCttt                                                                                                                                  <  2:2327495/149‑1 (MQ=255)
                   ttCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCttt                                                                                                                                  <  2:2384153/149‑1 (MQ=255)
                    tCATGACGCAGCTGATGATCCACATTCTTTCCCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCtttt                                                                                                                                 <  2:3938348/149‑1 (MQ=255)
                     cATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTg                                                                                                                                <  1:3972246/149‑1 (MQ=255)
                      aTGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGc                                                                                                                               <  2:3307642/149‑1 (MQ=255)
                      aTGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGc                                                                                                                               <  2:462280/149‑1 (MQ=255)
                       tGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGcc                                                                                                                              <  1:3166914/149‑1 (MQ=255)
                       tGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTTTGcc                                                                                                                              >  2:1966269/1‑149 (MQ=255)
                        gACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTGTTTCTTACCTTTTGCCg                                                                                                                             >  1:2010060/1‑149 (MQ=255)
                             aGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTatg                                                                                                                        >  1:3266483/1‑149 (MQ=255)
                                    gatCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGa                                                                                                                 >  2:2917372/1‑149 (MQ=255)
                                     atCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGAt                                                                                                                <  2:116140/149‑1 (MQ=255)
                                     atCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGAt                                                                                                                <  1:553006/149‑1 (MQ=255)
                                     atCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGAt                                                                                                                <  2:2794087/149‑1 (MQ=255)
                                     atCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGAt                                                                                                                >  2:2628963/1‑149 (MQ=255)
                                     atCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGAt                                                                                                                >  1:544734/1‑149 (MQ=255)
                                      tCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATc                                                                                                               >  1:4682774/1‑149 (MQ=255)
                                       ccACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCg                                                                                                              >  2:4370772/1‑149 (MQ=255)
                                       ccACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCg                                                                                                              <  1:2660155/149‑1 (MQ=255)
                                        cacaTTCTTTACCCACACAAATTCATGTCCTTTGTTCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGt                                                                                                             <  2:2221367/149‑1 (MQ=255)
                                          caTTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGttt                                                                                                           >  1:3297356/1‑149 (MQ=255)
                                           aTTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTc                                                                                                          <  2:1406171/149‑1 (MQ=255)
                                            ttCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCt                                                                                                         <  2:4047694/149‑1 (MQ=255)
                                            ttCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCt                                                                                                         <  2:3883622/149‑1 (MQ=255)
                                               tttACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGa                                                                                                      >  1:620025/1‑149 (MQ=255)
                                               tttACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGa                                                                                                      >  2:1894515/1‑149 (MQ=255)
                                                    ccACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGtta                                                                                                 <  2:1931360/149‑1 (MQ=255)
                                                     cacacaACTTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGttat                                                                                                <  1:1165722/149‑1 (MQ=255)
                                                     cacacaAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGttat                                                                                                <  1:1434432/149‑1 (MQ=255)
                                                      acacaAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGttatt                                                                                               >  2:4294875/1‑149 (MQ=255)
                                                       cacaAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGttatta                                                                                              <  1:3781167/149‑1 (MQ=255)
                                                           aaTTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCa                                                                                          >  1:4618840/1‑149 (MQ=255)
                                                           aaTTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCa                                                                                          >  1:3002992/1‑149 (MQ=255)
                                                            aTTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAg                                                                                         <  2:2947589/149‑1 (MQ=255)
                                                            aTTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAg                                                                                         <  2:2425137/149‑1 (MQ=255)
                                                             ttCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGt                                                                                        <  2:3750439/149‑1 (MQ=255)
                                                                aTGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGtttt                                                                                     <  2:1626396/149‑1 (MQ=255)
                                                                aTGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGtttt                                                                                     <  2:716309/149‑1 (MQ=255)
                                                                              cTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCaa                                                                       <  2:4494942/149‑1 (MQ=255)
                                                                                 ccATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTTCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGa                                                                    <  1:724772/149‑1 (MQ=255)
                                                                                  cATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGAAAATTAGCGCAAAGaa                                                                   >  1:3660452/1‑149 (MQ=255)
                                                                                  cATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTACGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGATTCTTGAGGTTATTATTCAGTTTTGAAAAATAGCTCAAAGaa                                                                   >  1:3182417/1‑149 (MQ=255)
                                                                                   aTGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGaaa                                                                  >  1:3587020/1‑149 (MQ=255)
                                                                                      aGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTc                                                               <  1:1529895/149‑1 (MQ=255)
                                                                                       gTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCt                                                              <  1:4313914/149‑1 (MQ=255)
                                                                                       gTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTGTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCt                                                              >  2:894154/1‑149 (MQ=255)
                                                                                        ttGTCCTGAAACCAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTg                                                             <  2:1881560/149‑1 (MQ=255)
                                                                                         tGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTgg                                                            >  2:1425296/1‑149 (MQ=255)
                                                                                            ccTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAAt                                                         <  2:626857/149‑1 (MQ=255)
                                                                                            ccTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAAt                                                         >  2:2528141/1‑149 (MQ=255)
                                                                                             cTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATc                                                        <  1:4370772/149‑1 (MQ=255)
                                                                                              tGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATct                                                       <  2:2283598/149‑1 (MQ=255)
                                                                                                aaaaCAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAACTTCTGGAATcttc                                                     >  1:2125444/1‑149 (MQ=255)
                                                                                                 aaaCAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTAACTTTTGCCGCTATGATGCCGATCGTTGCTTGAGGGTATTATTCAGTTTTGCACATTAGCGCAATGAAATGCTGGACTcttcc                                                    >  1:2840711/1‑149 (MQ=255)
                                                                                                      gagCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTtccttcct                                               >  2:3155192/1‑149 (MQ=255)
                                                                                                       agCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTg                                              >  1:11823/1‑149 (MQ=255)
                                                                                                         cacaCGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGAt                                            <  1:1140558/149‑1 (MQ=255)
                                                                                                         cacaCGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGAt                                            <  1:1817899/149‑1 (MQ=255)
                                                                                                          acacGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGAtt                                           <  1:857070/149‑1 (MQ=255)
                                                                                                          acacGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTGTCTTGAGGTTATGAGTCAGTTTTGCCAAGTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGAtt                                           >  2:1579440/1‑149 (MQ=255)
                                                                                                                 aataaGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTttgcatt                                    <  2:3422255/149‑1 (MQ=255)
                                                                                                                  ataaGACAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTGTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTttgcattg                                   <  2:3993150/149‑1 (MQ=255)
                                                                                                                  ataaCACAACCGATAACGCCTTCGTAAACATCCTGCCACCATTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTttgcattg                                   <  2:4277687/149‑1 (MQ=255)
                                                                                                                   taaGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTttgcattgc                                  <  2:68641/149‑1 (MQ=255)
                                                                                                                    aaGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTttgcattgca                                 >  1:2578192/1‑149 (MQ=255)
                                                                                                                     aGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTtgcattgcat                                <  2:2244266/149‑1 (MQ=255)
                                                                                                                       aCAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTc                              >  1:1305769/1‑149 (MQ=255)
                                                                                                                        cAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCt                             <  2:546838/149‑1 (MQ=255)
                                                                                                                        cAACCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCATTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCt                             <  1:1735021/149‑1 (MQ=255)
                                                                                                                          aCCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGc                           <  2:1523938/149‑1 (MQ=255)
                                                                                                                          aCCGATAACGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGc                           >  1:4080719/1‑149 (MQ=255)
                                                                                                                           ccGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGTGGTTATGCTTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCAGTCTGcc                          >  1:2419737/1‑149 (MQ=255)
                                                                                                                            cGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCg                         <  1:3220297/149‑1 (MQ=255)
                                                                                                                              aTAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGtt                       >  1:3854756/1‑149 (MQ=255)
                                                                                                                                aaCGCCTTCGTAAACATCCAGCCACCTTTTTCTTACCTTGTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTgc                     <  2:3458436/149‑1 (MQ=255)
                                                                                                                                 aCGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCACAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTgcg                    >  2:4731046/1‑149 (MQ=255)
                                                                                                                                     cTTCGTAAACATCCTGCCACCTTTTTCGTACCTTGTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGa                <  2:3060028/149‑1 (MQ=255)
                                                                                                                                        cGTAAACAGCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGAttt             <  1:2216279/149‑1 (MQ=255)
                                                                                                                                         gTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTa            >  2:2660844/1‑149 (MQ=255)
                                                                                                                                           aaaCATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGt          >  2:2501153/1‑149 (MQ=255)
                                                                                                                                             aCATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGc        <  1:3571171/149‑1 (MQ=255)
                                                                                                                                              cATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGCt       >  2:121081/1‑149 (MQ=255)
                                                                                                                                               aTCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGCTa      <  2:4595507/149‑1 (MQ=255)
                                                                                                                                               aTCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGCTa      <  1:3366151/149‑1 (MQ=255)
                                                                                                                                                tCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTGAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGCTAt     >  1:3552669/1‑149 (MQ=255)
                                                                                                                                                  cTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGCTAttt   <  1:2200285/149‑1 (MQ=255)
                                                                                                                                                  cTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGCTAttt   <  2:1238736/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATAAGACAACCGATAACGCCTTCGTAAACATCCTGCCACCTTTTTCTTACCTTTTGCCGCTATGATGCCGATCGTTTCTTGAGGTTATTATTCAGTTTTGCAAATTAGCGCAAAGAAATTCTGGAATCTTCCTTCCTGATTTTGCATTGCATTCTGCCGTTGCGGCGATTTAGTGCTATTTT  >  CP009273/1503177‑1503472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: