| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,080,679 | A→T | 7.2% | intergenic (‑84/+131) | yoeI ← / ← yeeY | uncharacterized protein/LysR family putative transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,080,679 | 0 | A | T | 7.2% | 585.4 / 6.9 | 227 | intergenic (‑84/+131) | yoeI/yeeY | uncharacterized protein/LysR family putative transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (109/95); new base T (3/19); total (113/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 237 total aligned reads displayed.
GTTATGCGACATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTC > CP009273/2080532‑2080826 | gTTATGCGACATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAATCCCGGCCTCTTGGTATGAATGAt > 1:1663102/1‑149 (MQ=255)gTTATGCGACATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGAt > 1:3633133/1‑149 (MQ=255) ttATGCGACATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGAtg > 1:2523692/1‑148 (MQ=255) tATGCGACATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGAGTg > 2:4476452/1‑149 (MQ=255) tGCGACATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAAGGATTGGt > 2:2037996/1‑149 (MQ=255) cGACATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGttt < 2:2884366/149‑1 (MQ=255) cATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGaa < 2:2209725/149‑1 (MQ=255) aTGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAg > 2:790752/1‑149 (MQ=255) tGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGCTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGaatc > 2:3830861/1‑147 (MQ=255) ctcCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATa < 2:44998/149‑1 (MQ=255) cTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGAGTGGTTTGAAGCAAAAAATAAcc > 2:3293536/1‑149 (MQ=255) ttACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGa < 2:4495017/149‑1 (MQ=255) gTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGGTTGAAGCAAAAAATAACCGACGCtg > 2:4726285/1‑149 (MQ=255) ttaTAACCGTCGCTTATGCAAAAAATTGCCCATTTTTTTTGGTTTCCTCAGCGAAAACAACTGTCGTTTTTTTGTAAATATCTATCCGGTACGAAGCGCGGCCTCTTGGTATTAATTTTTGGTTTGAAGCAAAAAATAACCGACGCtga < 2:123214/147‑1 (MQ=255) aTAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCtgatg > 1:4526493/1‑149 (MQ=255) aTAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCtgatg < 2:3132570/149‑1 (MQ=255) tAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCtgatga > 1:1353220/1‑149 (MQ=255) tAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCtgatga > 2:3019124/1‑149 (MQ=255) tAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCtgatga > 1:1095934/1‑149 (MQ=255) aCCGTCGCTTAAGAAAAAATTTGCCCAATTTTTTTGGATTCCTCAGCGAAAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTTTGAATGATTGTTTTGAAGAAAAAAATAACCGACGCTGATGaaa < 1:2316009/149‑1 (MQ=255) cgcgTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCg > 2:1151479/1‑149 (MQ=255) gcgTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCgg < 2:2357260/149‑1 (MQ=255) gcgTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAAACGACGCTGATGAAACGTCgg > 2:4034894/1‑149 (MQ=255) gTACGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTCGTAAATATCTATCCGGTACGACGCCCGGCCTCTTGGTATGAATTATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGtt < 1:1961013/149‑1 (MQ=255) aaGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGtttt > 2:261099/1‑149 (MQ=255) aaGCAAAAAATTGCCCCATTTTTTTGGATTCCGCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGTTACGCAGCCCGGCCTCTTGGTATGAATTATTGGTTTGAAGAAAAAAATAACCGACGCTGATGAAACGTCGGtttt < 2:2837635/149‑1 (MQ=255) agaaaaaaaTTGCCCATTTTTTTTGGATACCTCCGCGAAAACAACTGTCTTTTTTTATTAATTATCTATCCGGTACGAAGCCCGGCCTGTTTTTATTATTTTTTGGTTTGAAGAAAAAAATAACCGACGCTGATGAAACGTCGGttttt < 1:3700949/146‑1 (MQ=255) aaaaaaTTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGt > 1:4328623/1‑149 (MQ=255) aataTTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTTTCGTTTTTTATTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGTTTTTATTGTTTGTTTTTAAGAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCa < 1:1055059/146‑1 (MQ=255) aaTTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCAtt > 2:2279919/1‑149 (MQ=255) aaTTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCAtt > 1:2415745/1‑149 (MQ=255) aTTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCAttt > 1:2888593/1‑149 (MQ=255) aTTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCAttt > 1:496333/1‑149 (MQ=255) aTTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCAttt > 1:4218120/1‑149 (MQ=255) gCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCAtttttt < 2:4305887/149‑1 (MQ=255) gCCCCATTTTTTTGGAGTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCTGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCAtttttt < 2:3402456/149‑1 (MQ=255) gCCCAATTTTTTTGTATACCTCAGCCAAAACAACTTTCGATTTTTATTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGTTATGAATTATTGGTTTGAAGAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCAtttttt < 1:1002899/149‑1 (MQ=255) ccATTTTTTTGGATTCCACAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAACCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGAc < 2:1692362/149‑1 (MQ=255) ccATTTTTTTGGATTCATCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTAAGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGaa > 2:879417/1‑148 (MQ=255) aTTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAg > 2:2528455/1‑149 (MQ=255) aTTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTAAGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAATAAAAAAATAACCGACGCTGATGAAACGTCGGTGTTTAGTCATTTTTTGACAg > 2:4332558/1‑149 (MQ=255) tttttttGGATTCCTCAGCGACAACAACTGTCGATTTTCAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAgc < 2:3115801/149‑1 (MQ=255) ttttttGTATTCCTCAGCGAAAACAACTGTCGATTTTTATTAAATATCTAGCCGGTACGACGCCCGGCCTCTTGTTATTATTGATTGTTTTTAAGAAAAAAAAAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAgcg < 1:2023385/149‑1 (MQ=255) ttttttGGATTCCTCTGCGACAACAACTGTCTATTTTTAGTAAATTTCTATCCGGTACGAAGCCCGGCATCTTGGTATTAATGATTGGTTTGAAGAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAgcg < 1:304564/149‑1 (MQ=255) tgttttCCACAGCCAAAACACCGTTCTATTTTTCTTAAATATCTAGCCGTTACGACCCCGGGCCTCTTGGTTTGATTGATTGTTTTTAACAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCa < 1:420148/145‑1 (MQ=255) ggtttCCTCAGCGAAAACAACTGTCGTTTTTTAGTAAATATCTATCCGGTACGACGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAt < 1:398251/146‑1 (MQ=255) ggATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAt > 1:2618129/1‑149 (MQ=255) aTTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATtg > 1:2093626/1‑149 (MQ=255) aTTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATACGGTAAGAAGCCCGGCCTCTTGGTATGAAAGTTTGGTTTGAAGCAAAAAATAACCGACGCTTATGAAACGTCCGTTTTTATTCATTTTTTGAAAGCGGCGCATtg > 1:4466430/1‑149 (MQ=255) ttCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATtgt < 2:1912048/149‑1 (MQ=255) cAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTa > 2:1406058/1‑149 (MQ=255) cAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGGCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTa > 2:1405981/1‑149 (MQ=255) aGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTaa > 2:2633089/1‑149 (MQ=255) gCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTaaa > 1:176533/1‑149 (MQ=255) acaacaACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATgg > 2:358429/1‑149 (MQ=255) acaacaACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATgg > 1:3158294/1‑149 (MQ=255) acaacTGTCTTTTTTTATTAAATATCTAGCCGGTACGAAGCCCGGCATGTTGTTATGAATTATTGTTTTGAACAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATggggg < 1:3619294/149‑1 (MQ=255) caacTGTCGATTTTTATTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAAACGACGCTGATGAAACGTCGGTTTTTATTAAATTTTTTACAGCGGCGCATTGTGCCGAAAAgggggg > 1:2838189/1‑149 (MQ=255) aacTGTCGATTTTTAGTAAATATCTATACGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAAAGTCGGTTTTTTTTGATTTTTTTTAAGCGGCGCATTTTTCCTAAATtgggggg > 1:4131153/1‑149 (MQ=255) acTGTCGTTTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGTTATTAATTATTGGTTTGAAGAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGa < 1:739279/149‑1 (MQ=255) cTGTCTATTTTTATTAAATATCTCTCCGTTACGAAGCCCGGCCTCTTGTTATTAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGaa < 1:3013169/149‑1 (MQ=255) gttttttAGTAAATAGCTAGCCGGTACGACGCCCGGCCTCTTGTTATTAATGTTTGGTTTTAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGAc < 1:535886/147‑1 (MQ=255) gATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGAc > 1:1201985/1‑149 (MQ=255) tttttAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACaa < 2:2466219/149‑1 (MQ=255) tttAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAaga < 2:3271003/149‑1 (MQ=255) gTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAAt > 2:1085589/1‑149 (MQ=255) atatCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATgaga > 1:661543/1‑149 (MQ=255) atatCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATgaga > 2:1663202/1‑149 (MQ=255) atatCTAGCCGTTACGAAGCCCGGCCTCTTGTTATTATTGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATgaga < 1:2657465/149‑1 (MQ=255) tatctatcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGagag > 2:1941699/1‑149 (MQ=255) atctatcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAgg > 1:1442306/1‑149 (MQ=255) agctatcCGGTACGACGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAgg < 2:4178542/147‑1 (MQ=255) ctatcCGTTACGAAGCCCGGCCTCTTGGTATGATTTTTTGGTTTTAAGAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCt < 1:3806175/149‑1 (MQ=255) ctatcCGGTACGACGCCCGGCCTCTTGTTTTGAATGATTGTTTTTAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCt < 1:574552/149‑1 (MQ=255) ctatcCGGTACGAAGCCCGGCCACTTGGTATGAATTATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCCTTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCt < 2:596970/149‑1 (MQ=255) atcCGGTACGAAGCCCGGCCTCTTGTTATTATTTTTTGGTTTTAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTg < 1:1047890/149‑1 (MQ=255) ccGTTACGAAGCCCGGCCTCTTGTTTTGAATGATTGTTTTGAATAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTc < 1:3293723/149‑1 (MQ=255) tACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGaa > 2:3349894/1‑149 (MQ=255) cGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGaata > 2:1374861/1‑149 (MQ=255) gacgCCCGGCCTCTGGGTATGAATGATTGGTTTGACGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGaataa < 2:2430627/146‑1 (MQ=255) aaGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGaataat > 2:1340798/1‑149 (MQ=255) aaGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGaataat < 2:2724422/149‑1 (MQ=255) aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAACAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAAtt < 2:3177410/149‑1 (MQ=255) aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAAtt > 2:4403002/1‑149 (MQ=255) aGCACGGCCTCTTTGTATGAATGATTGGTATGAAGCAAAAAAAAACCGACGCTGATGAAACTTCGGTTTTTAGTCAATTTATTACAGCGGCGCATAGTGCCTAAATGGGGGGGAAATGACAAGAGAAAGAGAGGCTAGAAAGAATAAtt > 1:4287985/1‑149 (MQ=255) gCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAAttt > 2:2021145/1‑149 (MQ=255) cccGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAAtttt < 2:1504619/149‑1 (MQ=255) cccGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAAtttt > 2:3087538/1‑149 (MQ=255) ccGGCCTCTTGTTATGAATTATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAAttttt < 2:1695723/149‑1 (MQ=255) cGGCGTCTGGTTATTATTTATTTGTTTTAAGCAAAAAAAAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTc < 1:895390/149‑1 (MQ=255) ggCCTCTTGTTATGAATGATTGGTTTGAACAAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCt < 2:3199859/149‑1 (MQ=255) ggCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCt > 2:3471852/1‑149 (MQ=255) gCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCtt < 1:346088/149‑1 (MQ=255) ctctTGGTTTGAATGATTGGTTTGAAGCAAAAAATACCCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTa < 1:449324/149‑1 (MQ=255) ctctTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTa < 1:28136/149‑1 (MQ=255) tGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAAAGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCAGTGTGCCTAAATGGGGGGGAAATGACACGAGAAGGAGAGGGGTGTCAGAATAATGTTTCTGTAACTg > 2:3417908/1‑149 (MQ=255) gTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGc > 2:3026068/1‑149 (MQ=255) gTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGc > 2:53647/1‑149 (MQ=255) aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGAtt > 2:2042274/1‑149 (MQ=255) aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGAtt > 2:1646705/1‑149 (MQ=255) | GTTATGCGACATGGTCATTCTCCTTTACGGTGATAACCGTCGCGTAAGCAAAAAATTGCCCCATTTTTTTGGATTCCTCAGCGACAACAACTGTCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGGGGGAAATGACAAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTC > CP009273/2080532‑2080826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |