| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,707 | C→A | 20.7% | intergenic (‑24/+284) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,707 | 0 | C | A | 20.7% | 457.9 / 17.6 | 236 | intergenic (‑24/+284) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base C (39/120); new base A (45/3); total (112/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.32e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 244 total aligned reads displayed.
TGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCG > CP009273/2170559‑2170855 | tGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTc < 2:1201423/149‑1 (MQ=255) aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGAt > 2:754862/1‑149 (MQ=255) ggTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAtt < 2:1873312/149‑1 (MQ=255) ggTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAtt < 1:2981496/149‑1 (MQ=255) ggTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAtt < 2:3148054/149‑1 (MQ=255) tGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑Ca < 1:3467949/149‑1 (MQ=255) ggCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑Caa < 1:758986/149‑1 (MQ=255) cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑Caaaa < 1:133867/149‑1 (MQ=255) aGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGAGTT‑Gaaaaa > 1:944690/1‑148 (MQ=255) gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGATTT‑Aaaaaaaaaa > 1:3265487/1‑144 (MQ=255) tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAAt > 2:3192350/1‑149 (MQ=255) ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATg < 2:3607135/149‑1 (MQ=255) ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATg < 1:4534649/149‑1 (MQ=255) ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑GAAAAAATTAtt > 1:2733901/1‑148 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGaa < 2:1400569/149‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGaaa < 2:1905461/149‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAAAATAAAGaaa > 2:1711302/1‑149 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTT‑AAAAAAATAAAGaaa > 2:109543/1‑149 (MQ=255) caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTT‑AAAAAAATAATTAAaata > 1:1043749/1‑149 (MQ=255) ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAattatt < 2:781887/149‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑GAAAATATAATGAAATTAttt > 2:1251018/1‑149 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGt < 2:3719644/149‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGtttt < 1:1019995/149‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑CAAAATATAATTAAATTAtttttttt > 1:2293514/1‑149 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGAATT‑CAAAAAATAAATAAAATAAtttttttt > 1:3842091/1‑149 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTa > 2:4277941/1‑149 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTa < 2:4507974/149‑1 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAAAAAAAAGAAATTATTTTTTTTTAAat > 1:1990323/1‑149 (MQ=255) gTTTCGAGAGTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAat < 2:3661378/149‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑AAAAAAATAATTAAAATAATTTTTTTTaaaaa > 2:4239872/1‑147 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTT‑AAAAATAAAATTAAAATAATTTTTTTTAAata > 1:182572/1‑149 (MQ=255) ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAatat < 1:4015571/149‑1 (MQ=255) ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑CAAAATAAAAAGAAATTATTTTTTTTTAAatat > 2:107800/1‑149 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATc < 1:3186788/149‑1 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAATT‑AAAAAAATAAATAAATTATTTTTTTTTTAaaata > 1:3536648/1‑148 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCga < 1:3207778/149‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCga < 2:3219211/149‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑CAAAATATAAATTAAATATTTTTTTTTAAATATagag > 2:4612606/1‑149 (MQ=255) gtttGTGTATATTGAATGCCGGAACCGCATAACCTCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTAGATACCACGTACATTTTCAGATCCTGTCGTTTGTTTTCGATTT‑CAAAATATATTGAAATTATTTGTTTTTATATTTCgaga < 2:2419702/147‑1 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGAt < 1:1699283/149‑1 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑CAAAATAAAAAGAAAATATTTTTTTTTTAataaaaaggt > 1:2541929/1‑142 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑AAAAATATAATTAAAATATTTGTTTTTAAATATAGAGATa > 2:330093/1‑149 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATATCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATaa < 2:3335681/149‑1 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTGTTAGATTT‑AAAAAAATAATGAAATTATTTGTTTTTATATATCgagctca > 1:3729132/1‑145 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGATTT‑AAAAATAAAAAGAAAATAATTTTTTTTTAATAAAGAGTTaaac > 1:656431/1‑147 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGGTTTTGATTT‑GAAAATATAAATAAAATATTTTTTTTTTAATATAGAGaaaaaa > 1:2407081/1‑147 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGa < 1:2242559/149‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 2:1134591/149‑1 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGAt < 2:2497768/149‑1 (MQ=255) agatTGAATGCCGGATCCGCATAACCGCCGCTCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATc < 2:4430435/147‑1 (MQ=255) tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGGAATTATTTGTTTTTAAATATCGAGATAACGATca < 2:3268497/149‑1 (MQ=255) tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATca < 2:2523449/149‑1 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAAATATTTTTTTTTAAATATCGAGATAACGATcac > 2:3961936/1‑149 (MQ=255) ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTT‑CAAAATATTATTAAATTATTTTTTTTTTAATATAGAGATAACGATaaca > 2:561847/1‑149 (MQ=255) aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaaa < 1:2944084/149‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACAATCACAAAAAc < 2:960173/149‑1 (MQ=255) ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGa < 2:1180037/149‑1 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTATATTT‑AAAAATATAAATTAAATATTTTTTTTTAAAAATAGAGATAAAGATCACaaaaaacaca > 1:1145551/1‑144 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGTTTT‑TAAAATATAATTTAATTATTTTTTTTTTAATATATGGATAAAGATAACAAAAAAGACa > 1:500061/1‑149 (MQ=255) aaCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTT‑GAAAATATAATGTAAATATTTTTTTTTAAAAATAGTGATTAAGATAACCAAAACGACaaa > 1:4285796/1‑148 (MQ=255) acctaaTAACCGCCGCGGTGTGTTTTGTTCTGCTTGTGATTTGTCTATACCACTAACTTTTTAATTTCCTGTGTTTTTTTTTGGTTTT‑AAAAATATAATTAATTTTTTTTTTTTTAATTATGTATATAACGATCACAAAAACGACAata < 2:4106002/144‑1 (MQ=255) aCCGAATAACCGCCGCGGTGTGGTTTGTTCATCATCTGCTTTGTCTATACCACTTACTTTTTAATATCGTGTGGTTTTTTTTCTTTTT‑CAAAATATAATTAAATTATTTGTTTTTAAATATCGATTTAACGAACACAAAAACGACAata < 2:3367397/149‑1 (MQ=255) ccGCATAACCGCCGCGCTGTGGGTTGTTCAGCATCTGATTTGTCTATACCACTTACTTTTTCATATCCTGTGGTTTGTTTTCTATTT‑CAAAATATAATGAATTTTTTTGTTTTTAATTTTCGAGATAACGATCAAAAACACGACAatat < 2:92515/149‑1 (MQ=255) aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTT‑CAAAAAATAATGAAAATATTTGTTTTTATATATCGAGTTCACGATCACAAAAACAACACAATGaaa > 1:2644384/1‑149 (MQ=255) tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCCCGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGaaaa < 2:3569459/149‑1 (MQ=255) tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTT‑CAAAATATAATGAAAATATTTTTTTTTAAAAATCGAGATAACGAACAAAAAAAACACAAAAAGaaaa > 2:4100214/1‑149 (MQ=255) ccgccgGGATGTGCTTTTTTCAGCATCTGATTTTTATATACCACTTACTTTTTAATATCCTGTTGTTTTTTTTCTTTTA‑CAAAATTTATTGAAATTATTTGTTTTTAAATATCTATAAAACGATCAAAAAAACGACAATATGAAAatta < 2:1333494/149‑1 (MQ=255) ccgccgCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTTTCTTTTGTTTTCGATTT‑CAAAATATAATTAAATTATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAatta < 1:1969566/149‑1 (MQ=255) ccgccgCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTT‑CAAAAAATAAATAAAATATTTTTTTTTAAATATAGAGATAACGATAACCAAAACGCCAATATgcacaata > 1:1540573/1‑142 (MQ=255) gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTTTTTT‑AAAAAAATAATTTAAATTTTTTTTTTTTAATAAAGATTTTTAGAAGACAAAAACAACAAAATGTTAattatt > 1:3710217/1‑149 (MQ=255) gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGTTTT‑CTAAAAATAATGAAAATATTTTTTTTTTAAAATAGAGTTAAAGATAACAAAAAAACCAAAATTGAAATTATTCtagg > 2:805991/1‑149 (MQ=255) gcTGGGCTTTTTGCAGCATCTGCTTTGTCGATACCCGGAACTTTTTCATATCCTGTCGTTTGTTTTCGATTT‑AAAAATATAATCAAATTATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCgagg < 2:567124/149‑1 (MQ=255) tgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGATTTAAAAAAAAAAATAAAATTATTT‑TTTTTTTATATAGAGTTAACGGAAACAAAAAAGACAAGATGAAAATTATTAgagggttg > 1:2690459/1‑145 (MQ=255) tCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑AAAAAAATAATGAAATTATTTTTTTTTAAATATAGAGATAAACATAACAAAAACGACAAAATGAAAATTATTAGAGGAGTGGAAGGCaa > 2:4264202/1‑149 (MQ=255) cAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTT‑CAAAATATAATTAAATTATTTTTTTTTTAATATATAGATAAAGATAAAAAAAAAGACAAAATTAAAAATATTAGAGGAGTGTAAGTCaaa > 2:2166140/1‑149 (MQ=255) aGCATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCTTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaa < 2:2552036/149‑1 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTT‑AAAAAAAAAATTAAAATATTTTTTTTTTAATATAGAGTTAAAGATCACAAAAAAGAAAATATTAAAAATATTATATGAGTGAAAGGCaaaaaaa > 1:1080140/1‑149 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTGGATTT‑GAAAAAAAAATTAAAAAATTTTTTTTTTAATATAGCGAAAACCATAACAAAAACAAAAAAAATAAAAAAATTAGAGGAGGGAAAAGCacaaaaa > 1:4651389/1‑149 (MQ=255) tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGCTTT‑GAAAAAATAATGTAAATATTTTTTTTTATATATCATGATTAAGATTACAAAAAAGACAAAATGAAAAATATTGGTTGTGTTTAAGGGaaaaaaaa > 2:2814639/1‑148 (MQ=255) gCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTTTTCGATTT‑CAAAAAATAATGAAATTAATTGTTTTTAAATATCGAGATAACCATCACAAAAACCACCATATGAAAATTATTCGAGGAGGGAAATGCCAAAAAAAGGc > 2:1973671/1‑149 (MQ=255) tttGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTTGTTTT‑AAAAATATAATTTAATTATTTTTTTTTTAATATAGATTTAAACATAAAAAAAAAGAAAATATTTAAATTATTATGGGAGTGGAATGCaaaaaaaaaggct > 2:2080768/1‑143 (MQ=255) cGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑AAAAAAAAAATGAAATTATTTTTTTTTTAATATAGAGAAAAAGATCAAAAAAAACACAAAATTAAAATTTTTAGAGGTGTGAAAGGCAAAAAAAAGGCCACCCGa > 2:1421696/1‑149 (MQ=255) gATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTT‑AAAAATATAAATTAAATATTTTTTTTTTAATATATAGATAAAGAAAAAAAAAAACAAAAAAATAAAAATATTAGTGGTTTGAAAGGCAAAAAAAAGGccaacccat > 1:1564670/1‑142 (MQ=255) aCCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTT‑AAAAAAATAATTAAATTATTTTTTTTTAAATATAGAGATAAAGATCACAAAAACGACAATATTAAAATTATTAGAGGAGTGTAAGGCAAAAAAAAGGCCGCCCCAGAgg > 2:1052992/1‑149 (MQ=255) gTACATTTTCTTATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc < 2:173982/149‑1 (MQ=255) aCATTTTCATATCCTGTCGTTTTTTTTTGATTT‑TAAAATATAATGAAAATATTTTTTTTTAAATATAGAGATAAAGATCACAAAAAACACACTATTAAAATTTTTAGAGGGGTGTAATGCAAAAAAAATGCCGCCCCATATGGCAGccc > 2:1316994/1‑148 (MQ=255) tttttCATATCCTTTCTTTTGTTTTATATTA‑AAAAATAAAATCAATTTATTTTTTTTTAAATATCTATATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 1:3486001/148‑1 (MQ=255) aTTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 2:2954598/149‑1 (MQ=255) aTTTTCATATCCTGTCGTTTGTTTTCGATTT‑AAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 2:2734105/149‑1 (MQ=255) ttttCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:2648273/149‑1 (MQ=255) ttCATATCCTGTCGTTTGTTTTCGATTT‑AAAAATATAATGAAATTTTTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCa < 1:394402/149‑1 (MQ=255) tCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATCGGGAAGCCGTAGCAAAGTGCGCgtg > 2:2991625/1‑149 (MQ=255) cGTTTGTTTTCTATTT‑CAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATACCGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtgt < 2:1587178/149‑1 (MQ=255) gtttgtttTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTTTTCGAGGAGTGGAAGGCAAAATAACGGCCTCCCGAGCGGGGCGCCGTTGCAAAGTGCGCGGGtt > 2:4509539/1‑149 (MQ=255) gtttgtttTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:2299961/1‑149 (MQ=255) ttttttttCGATTA‑CAAAATATAATTAAATTATTTTTTTTTAAATATCTATATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt < 1:4691992/149‑1 (MQ=255) ttgtttTCGTTTT‑AAAAATTTAATGAAATTTTTTTTTTTTAATTATCGTGATACGGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt < 1:4167352/149‑1 (MQ=255) gtttTCGATTT‑CAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa < 2:656431/149‑1 (MQ=255) cGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGACAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 1:2937838/1‑149 (MQ=255) cGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAATAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 2:3394810/1‑149 (MQ=255) | TGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTT‑CAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCG > CP009273/2170559‑2170855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |