| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,438,529 | A→C | 11.0% | F171V (TTC→GTC) | yfcA ← | UPF0721 family inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,438,529 | 0 | A | C | 11.0% | 645.8 / 5.6 | 291 | F171V (TTC→GTC) | yfcA | UPF0721 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (158/88); new base C (2/37); total (160/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.49e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 295 total aligned reads displayed.
TGCCCCACCAGCATGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGG > CP009273/2438384‑2438677 | gCCCCACCAGCATGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGcc < 2:1255200/149‑1 (MQ=255) gCCCCACCAGCATGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGcc < 1:1877345/149‑1 (MQ=255) ccaccaGCATGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAgc > 1:4315884/1‑149 (MQ=255) caGCATGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGACGGCCAGCGCGt > 2:4539383/1‑149 (MQ=255) caGCATGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGt > 1:3376239/1‑149 (MQ=255) cATGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTaaa > 1:1049746/1‑149 (MQ=255) aTGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTaaaa > 2:3897863/1‑149 (MQ=255) aTGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTaaaa < 2:2886735/149‑1 (MQ=255) tGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTCATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTCAAAc > 2:2183548/1‑149 (MQ=255) tGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGACGGCCAGCGCGTAAAAc > 1:1054700/1‑149 (MQ=255) gACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACg > 2:3209853/1‑149 (MQ=255) aCAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGa < 2:2354032/149‑1 (MQ=255) aaaGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGAcc > 1:2889601/1‑149 (MQ=255) ccGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCa > 2:2640470/1‑149 (MQ=255) ccGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCa > 1:2697899/1‑149 (MQ=255) tCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGcc < 2:2534863/149‑1 (MQ=255) ccAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGc > 1:2391561/1‑149 (MQ=255) ccAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGc > 1:2612695/1‑149 (MQ=255) cAAATCACTTTGCCGCCGAGAATAAACAGCATTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGcc < 2:1018807/149‑1 (MQ=255) aaaaTCACTTTGCCGCCGAGAAAAAACCCCAGTAAACCGCCGTTGTTTGAGGTTGCGTTGATTATTTGGGCGTGAGCCGGGGTTTTGGCGAGGTTAAACCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGcc < 1:4654350/148‑1 (MQ=255) ttGCCGCCTATAATAAACCGCTTTAAACCGCCGTTTTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCGGTGGTTTTGGCGTGGTTAAATCCGCACAGCGTAACGACGGCCCGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATcc < 1:4070496/149‑1 (MQ=255) gccgccGATAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTGGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGACGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCcat < 2:1783698/149‑1 (MQ=255) gcctataaTAAACCGCATTAAACCGCCGATGTTTTACGTTGGTTTGATTATTTTGGCGTGTGCGGTGGCTTTGGCGAGTTTAAATCCGCACTGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCcatcat < 2:2021905/143‑1 (MQ=255) gccgAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCcatcat > 1:2748331/1‑149 (MQ=255) gccgAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCcatcat > 1:3573173/1‑149 (MQ=255) ataaTAAACAGCAGTAAACCGCGGTTGTTTGAGGTTGTGTTGTTTATTTTGGCGTGCGCCGTGGCTTTGGCGAGTTTAAATCCGCACAGCGTAACGACGGCCAGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATaaaa < 1:1016804/147‑1 (MQ=255) gaATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTATTTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATaaaaa < 2:2956617/149‑1 (MQ=255) aacaaaaAGCAGTAAACCGCCGATGTTTGACGTTGCTTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACATCTTAACGAAGGCCAGCGCTAAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAAc < 2:3379829/146‑1 (MQ=255) aaTAAACAGCCTTAAACCGCGGTTGTTGGACTTTGCGTTGTGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACCGCGTAACGAAGGCCAGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAAc < 2:3685322/149‑1 (MQ=255) aaTAAACAGCAGTAAACCGCGGTTGTTTGAGGTTGCGTTTATTAATTTGGGGTGAGCCGTGGGTTTGGCGAGTTTAAATCCGCACAGCTTAACGAAGGCCAGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAAc < 1:989908/149‑1 (MQ=255) attaagagctgTAAACCGCCGATGTTTGAGTTTGCGTTGTGTAATTTGGCGTGAGCGGTGGCTTTGGCGTGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAAcc < 2:3767825/143‑1 (MQ=255) aTAAACAGCAGTAAACCGCGGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAAcc < 2:1284373/149‑1 (MQ=255) aTAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAAcc > 2:4385828/1‑149 (MQ=255) aaCATCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGAc < 2:3468680/149‑1 (MQ=255) aCAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTACAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACg > 2:3635514/1‑149 (MQ=255) cagcagTAAACCGCCTTTGTTTGAGGTTGCGTTGTGTATTTTGGCGTGAGCGGTGGCTTGGGCGTGGTTAAATCCGCACTGCGTAACTACGGCCAGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGc < 1:2331169/149‑1 (MQ=255) cagcagTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGc > 1:1181801/1‑149 (MQ=255) gcagTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGGAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAg > 1:4238456/1‑149 (MQ=255) ctgTAAACCGCCGTTGTTTGAGTTTGGGTTGTGTATTTGGGGTTGGGCGGTGGTTTTGGCTTGTTTAACTCCGCACAGCTTAACTAAGGCCCGGGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGc < 2:5601/147‑1 (MQ=255) cagTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGc > 1:2147030/1‑149 (MQ=255) aaCCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCg > 1:2031405/1‑149 (MQ=255) cggcgtttGTTTGAGGTTGGGTTTTTTATTTTGGGGTGTGCGGTGGGTTGGGCGTGGTTAAACCCGCACCGCGTAACGACGGCCCGCGGTAAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGc < 1:4159172/142‑1 (MQ=255) ccgccgATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGc > 2:4154271/1‑149 (MQ=255) cgccgATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCt > 2:4639876/1‑149 (MQ=255) ccgttttttGAGGTTGGTTTGTGTATTTTGGGGTGAGCGGTGGCTTTGGCGTGGTTAACTCCGCACTGCTTACCGACGGCCCGGGCTAAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTAt < 1:4539386/143‑1 (MQ=255) ccgTTGTTTGACGTTGCGTTGTGTATTTTGGCGTGTGCCGTGGCTTTGGCGTGGTTAAATCCGCACAGCGTACCGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTAt < 1:395033/149‑1 (MQ=255) cgAGGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTAtt < 2:2472631/149‑1 (MQ=255) gATGTTTGACGTTGCGTTGAGTAATTTGGCGTGCGCGGTGGCTTGGGCGAGGTTAAATCCGCACCGCGTAACGACGGCCCGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTa < 2:1304399/149‑1 (MQ=255) ttGTTGGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGACGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTaa < 2:1528699/148‑1 (MQ=255) gTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAAcg > 1:1502840/1‑149 (MQ=255) tttGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAAcgc > 2:3341874/1‑149 (MQ=255) tttGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAAcgc > 1:3624814/1‑149 (MQ=255) tGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGa > 2:4193889/1‑149 (MQ=255) gaggttgggttgTTTATTTGGGCGGGAGCGGTGGCTTGGGCGTGTTTAACGCCGCACAGCGTAACGAAGGCCCGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGaa < 1:3842103/146‑1 (MQ=255) gACGTTGCTTTTATTATTTGGGCGTGCGCCGGGGCTTGGGCGCGTTAAAACCCCCACCGCGAAACGACGGCCCGCGCGAAACACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGaa < 1:1451120/149‑1 (MQ=255) gACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGaa > 2:1435183/1‑149 (MQ=255) aCGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAg > 2:1624373/1‑149 (MQ=255) gttgcgttgAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAggg > 2:3118028/1‑149 (MQ=255) gttgAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAAc > 2:3525888/1‑149 (MQ=255) gttgAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAAc > 2:2689610/1‑149 (MQ=255) ttgAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAAcc > 2:4683224/1‑149 (MQ=255) gTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTAc > 1:3087341/1‑149 (MQ=255) tatttgggCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACCGGGTAACTAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACa < 2:2049786/143‑1 (MQ=255) aaTTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACAt < 2:4239694/149‑1 (MQ=255) aaTTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACAt > 2:2094596/1‑149 (MQ=255) aaTTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAAGCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACAt < 2:3939702/149‑1 (MQ=255) ttttGGGGTGTGCGGTGGCTTTGGCGAGTTTAAATCCGCACAGCTTAACGACGGCCAGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATc < 1:1449931/148‑1 (MQ=255) ggCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGgc > 2:1069292/1‑149 (MQ=255) gTGAGCGGGGGCTTTGGCGAGGTTAAATCCGCACTGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCt < 2:2486762/149‑1 (MQ=255) tGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTg > 1:3879796/1‑149 (MQ=255) ggggTGGTTTGGGCGTGTTTAACGCCCCCCCGCGTACCGCGGCCCCGCGGGAAACACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAACCCGCCGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCg < 1:4442603/146‑1 (MQ=255) cGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGt < 2:2296952/149‑1 (MQ=255) gTGGCTTTGGCGTGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGtc < 2:2269817/149‑1 (MQ=255) gTGGCTTTGGCGAGGTTAAATCCGCACTGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGtc < 2:862858/149‑1 (MQ=255) tGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGtct > 1:718630/1‑149 (MQ=255) gCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGtcttc > 1:2192785/1‑149 (MQ=255) ttGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCttcttc < 1:1532851/149‑1 (MQ=255) tgggCGAGTTTAAATCCGCACAGCGTAACGAAGGCCAGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCttcttc < 1:700823/147‑1 (MQ=255) ggCGAGGTTAAAGCCGCACCGCGTACCGACGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCAc < 2:643708/149‑1 (MQ=255) gggtgtttAAAGCCGCACAGCGTAACGACGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCAcc < 1:3361801/143‑1 (MQ=255) gCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCAcc > 1:1892496/1‑149 (MQ=255) cGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCACAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCt > 2:1972333/1‑149 (MQ=255) aGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAg > 2:717436/1‑149 (MQ=255) ggTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGc < 2:899415/149‑1 (MQ=255) ggTTAAACCCGCACAGCGTAACGACGGCCCGCGCTAAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGc < 1:1755497/149‑1 (MQ=255) gTTAACTCCGCACCGGGTAACGACGGCCCGCGCTTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCt < 1:3221968/149‑1 (MQ=255) gTTAAATCCGCACCGCGTAACGACGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCt < 2:1595386/149‑1 (MQ=255) gTTAAATCCGCACAGCGTACCGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCt < 1:625336/149‑1 (MQ=255) gTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCt < 2:4761434/149‑1 (MQ=255) gCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCa > 2:2053662/1‑149 (MQ=255) gCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCa > 2:452896/1‑149 (MQ=255) caGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCa > 2:3465462/1‑149 (MQ=255) cgCGTAACGACGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCaa < 1:3793927/148‑1 (MQ=255) gCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAg > 2:1696921/1‑149 (MQ=255) taccGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGaaa < 2:1152623/146‑1 (MQ=255) aaCGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAAt > 1:3337003/1‑149 (MQ=255) aaCGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAAt > 1:514933/1‑149 (MQ=255) aaCGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAAt < 2:2391561/149‑1 (MQ=255) gAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATaga < 2:3701431/149‑1 (MQ=255) aGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAgg > 1:3460912/1‑149 (MQ=255) | TGCCCCACCAGCATGACAAAGCCCGTCGCCCAAATCACTTTGCCGCCGAGAATAAACAGCAGTAAACCGCCGATGTTTGACGTTGCGTTGAGTAATTTGGCGTGAGCCGTGGCTTTGGCGAGGTTAAATCCGCACAGCGTAACGAAGGCCAGCGCGTAAAACGACCCGGCAGCCGGGCCAAAGAATCCATCATAAAAACCGACGCAGCCACCGGCTATTAACGCGAAGGGTAAACCGTACATCCGGCGCTGGCGGTCTTCTTCACCTAGCTTTGGCATCAGCAAGAAATAGAGG > CP009273/2438384‑2438677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |