| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,545,934 | G→T | 6.8% | R75L (CGC→CTC) | amiA → | N‑acetylmuramoyl‑l‑alanine amidase I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,545,934 | 0 | G | T | 6.8% | 1176.3 / 34.2 | 322 | R75L (CGC→CTC) | amiA | N‑acetylmuramoyl‑l‑alanine amidase I |
| Reads supporting (aligned to +/- strand): ref base G (131/167); new base T (9/14); total (140/182) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 328 total aligned reads displayed.
TTGTCAGGAATGTCGCAAGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCATAAACAT > CP009273/2545786‑2546082 | cAGGAATGTCGCAAGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAAc > 2:1691318/1‑149 (MQ=255) aaTGTCGCAAGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGtt < 2:4543262/149‑1 (MQ=255) aTGTCGCAAGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTc < 1:4413368/149‑1 (MQ=255) tGTCGCAAGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCg > 1:1954250/1‑149 (MQ=255) gTCGCAAGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCga > 2:4315376/1‑149 (MQ=255) cAAGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCgaaaga > 2:3037861/1‑149 (MQ=255) aaGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCgaaagaa > 1:1068821/1‑149 (MQ=255) aGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCgaaagaaa > 1:3969453/1‑149 (MQ=255) ccATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGaaaaa < 1:917065/149‑1 (MQ=255) cATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAAc < 2:1392585/149‑1 (MQ=255) aTCGCCACAGACGCACATTTACAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCCGGTCACGGCGGAATTGATACAGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACa < 2:1116110/149‑1 (MQ=255) gCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACAtgt < 2:1487556/149‑1 (MQ=255) gCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACAtgt < 2:3177810/149‑1 (MQ=255) cAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATgtgg < 1:2571636/149‑1 (MQ=255) cAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATgtgg > 2:2418246/1‑149 (MQ=255) aaGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATgtggtg > 2:874631/1‑149 (MQ=255) aGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGc > 1:4316808/1‑149 (MQ=255) aGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGc > 1:3131374/1‑149 (MQ=255) gACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCt < 1:391889/149‑1 (MQ=255) aCGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTg > 2:2273033/1‑149 (MQ=255) aCGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTg < 2:4664736/149‑1 (MQ=255) gAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGc > 1:3794336/1‑149 (MQ=255) gAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGc > 2:2556702/1‑149 (MQ=255) ttttAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGAtt > 1:62031/1‑149 (MQ=255) ttttAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGAtt > 1:1304760/1‑149 (MQ=255) ttAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGc < 2:2786887/149‑1 (MQ=255) aCCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACTCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTaaaaa < 1:3671942/149‑1 (MQ=255) aCCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTaaaaa < 1:3387585/149‑1 (MQ=255) aCCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTaaaaa < 1:998849/149‑1 (MQ=255) aCCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTaaaaa < 2:776108/149‑1 (MQ=255) ccAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACTCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAAc < 1:413646/149‑1 (MQ=255) ccAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAAc > 2:1611766/1‑149 (MQ=255) cAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAACAACATGTGGTGCTGGCGATTGCTAAAAACg > 2:3341479/1‑149 (MQ=255) gCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTc > 2:1736822/1‑149 (MQ=255) gCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTc > 1:4618771/1‑149 (MQ=255) aCGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGt < 1:2316992/149‑1 (MQ=255) aCGGACACAGCAAGCCGAAAGCCAAAAAATCGGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGTAATTGATACCGGAGCGATCGGACGCAAGGGTTCTAAATAAAAAAATGTGGTGGTGGCGTTTGCTAAAAACGTCCGt < 1:1247263/149‑1 (MQ=255) acaGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCAtt < 2:590491/149‑1 (MQ=255) caGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAACGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCAttt < 1:502434/149‑1 (MQ=255) caGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCAttt > 2:1036934/1‑149 (MQ=255) gCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTg > 1:2031942/1‑149 (MQ=255) aaGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCg > 1:2508450/1‑149 (MQ=255) gCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTa > 1:672383/1‑149 (MQ=255) cGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAAt < 2:3680910/149‑1 (MQ=255) aaaGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCa > 2:1907291/1‑149 (MQ=255) aGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATg < 2:2938177/149‑1 (MQ=255) gCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATgg > 1:4750433/1‑149 (MQ=255) gCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTAACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGGTCCAATTTGCGTAAtaaagg > 1:1652689/1‑144 (MQ=255) aaTCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGAt > 1:3408371/1‑149 (MQ=255) aTCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATg > 2:3981594/1‑149 (MQ=255) aTCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATg < 1:1494142/149‑1 (MQ=255) gcggcAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGt < 1:3849665/149‑1 (MQ=255) gcggcAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGt < 1:3563917/149‑1 (MQ=255) cggcAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGtt < 2:1164550/149‑1 (MQ=255) ggcAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGttt < 2:1966010/149‑1 (MQ=255) ggcAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGttt > 1:1741899/1‑149 (MQ=255) cAAACGTTTCGTTGGTCTCGATCCAGGCCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTaa < 2:4193569/149‑1 (MQ=255) tgtCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGtt > 2:2109727/1‑149 (MQ=255) tgtCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTAGAAAGAAAAACATTTGGTTCTTGCGATTTCTAAAAAAGTACGTTCCAATTTTCGTAATAATGGGATTTATGAGCGTTTAAAGCGtt > 1:2437548/1‑149 (MQ=255) gttgttCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACTCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTgg < 2:1700773/149‑1 (MQ=255) ttgttCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGc < 2:872124/149‑1 (MQ=255) ctcGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATAc > 1:2445297/1‑149 (MQ=255) gATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACTCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGtt < 2:3186494/149‑1 (MQ=255) aTCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGttt < 1:179909/149‑1 (MQ=255) aTCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGttt < 1:264535/149‑1 (MQ=255) tCCCGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTa < 1:4533992/149‑1 (MQ=255) tCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTa < 2:957084/149‑1 (MQ=255) tCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTa < 1:1992172/149‑1 (MQ=255) ccAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGGGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTAt < 1:3243714/149‑1 (MQ=255) cAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATc > 1:829308/1‑149 (MQ=255) ggTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATccc < 2:2484167/149‑1 (MQ=255) ggTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATccc > 2:3417856/1‑149 (MQ=255) gTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCa < 2:3279045/149‑1 (MQ=255) tCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCAc < 2:4371143/149‑1 (MQ=255) cACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACt < 2:2959920/149‑1 (MQ=255) aCGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACtt < 2:214311/149‑1 (MQ=255) aCGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACtt > 2:183588/1‑149 (MQ=255) ggcggAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTa > 2:691802/1‑149 (MQ=255) gcggAATTGATACCGGAGCGATCGGACTCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTAc > 2:2722640/1‑149 (MQ=255) gAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGAt < 1:235717/149‑1 (MQ=255) gAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGAt < 1:4356341/149‑1 (MQ=255) aaTTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATc < 2:1367257/149‑1 (MQ=255) aTTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATcg > 2:3579800/1‑149 (MQ=255) gtGATCCCGGAGCCATCGGACCCAACGGTTCGACAGAAAAACAGGTGGGGCGGGCGAGTGCTAAAAACGTCCGTTCCATTTTGCGTAATCAAGGGATTGATGCGCGTTGAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATcgc < 1:3341120/148‑1 (MQ=255) aTACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGtt < 2:4783094/149‑1 (MQ=255) cGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGaaa < 2:3137718/149‑1 (MQ=255) ggAGCGATCGGACGCAACGGTTCGAAAGAACAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAAt < 2:3818976/149‑1 (MQ=255) gAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATc < 2:3436963/149‑1 (MQ=255) gAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATc < 1:3275311/149‑1 (MQ=255) gAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATc < 1:2978539/149‑1 (MQ=255) aGCGATCGGACGCACCGGTTCGCAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGGTCTGGCGATACGTTTCTCCCACTTTACGATCGCGTTGAAATCg > 2:4098804/1‑149 (MQ=255) cGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGcc < 2:2982784/149‑1 (MQ=255) gATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGccc < 1:4261334/149‑1 (MQ=255) aTCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCa > 2:4072387/1‑149 (MQ=255) tCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCAt < 2:4402676/149‑1 (MQ=255) cGGACTCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCTATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCATa < 1:2870991/149‑1 (MQ=255) cGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCATAAACa < 1:1186891/149‑1 (MQ=255) cGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCATAAACa < 1:3037861/149‑1 (MQ=255) cGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCATAAACa < 2:3717939/149‑1 (MQ=255) gCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCATAAACAt > 2:752743/1‑149 (MQ=255) | TTGTCAGGAATGTCGCAAGCCATCGCCAAAGACGAACTTTTAAAAACCAGCAACGGACACAGCAAGCCGAAAGCCAAAAAATCTGGCGGCAAACGTGTCGTTGTTCTCGATCCAGGTCACGGCGGAATTGATACCGGAGCGATCGGACGCAACGGTTCGAAAGAAAAACATGTGGTGCTGGCGATTGCTAAAAACGTCCGTTCCATTTTGCGTAATCATGGGATTGATGCGCGTTTAACGCGTTCTGGCGATACGTTTATCCCACTTTACGATCGCGTTGAAATCGCCCATAAACAT > CP009273/2545786‑2546082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |