Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 2,549,676 | C→A | 100% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 2,549,676 | 0 | C | A | 99.7% | 1047.0 / ‑4.4 | 304 | L28L (CTG→CTT) | eutL | putative ethanol utilization carboxysome structural protein |
Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (154/149); total (154/150) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.93e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 304 total aligned reads displayed.
GGGCCGTGTGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTCAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATACGTTTCGCCA > CP009273/2549530‑2549821 | gggCCGTGTGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAg > 2:2415227/1‑149 (MQ=255) ccGTGTGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTc < 1:2859074/149‑1 (MQ=255) cGTGTGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCa < 2:3948797/149‑1 (MQ=255) cGTGTGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCa < 2:3792348/149‑1 (MQ=255) cGTGTGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCa < 2:1558436/149‑1 (MQ=255) cGTGTGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCa < 1:3987825/149‑1 (MQ=255) gtgtGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCAc < 1:3290311/149‑1 (MQ=255) gtgCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCAcgc < 1:3913545/149‑1 (MQ=255) gCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACgcgc > 2:2063739/1‑149 (MQ=255) gcCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAAt < 2:1650973/149‑1 (MQ=255) gcCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAAt < 2:1252749/149‑1 (MQ=255) cccGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATc > 2:550621/1‑149 (MQ=255) cccGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATc > 2:2941662/1‑149 (MQ=255) cATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCg > 2:2173242/1‑149 (MQ=255) atatAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGt < 1:1097239/149‑1 (MQ=255) atatAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGt < 2:1890780/149‑1 (MQ=255) tataGCGAGCGGCCATACACGACTTCCAGCATCGCCTGATTGGTCGATTCATCAGGGGCAATGTAGGTGACGTCATCGTAGTCGGCAGTAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTGACGCGCAAAATCGGCGtt < 1:3327165/149‑1 (MQ=255) tataGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGtt < 1:1712265/149‑1 (MQ=255) tataGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGtt < 2:4019428/149‑1 (MQ=255) taGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTaa > 2:2719703/1‑149 (MQ=255) taGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCACAAAATCGGCGTTaa > 1:2557616/1‑149 (MQ=255) agcgagcgGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAAc > 2:297562/1‑149 (MQ=255) gCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCaa < 2:1651797/149‑1 (MQ=255) gCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCaa > 1:4707652/1‑149 (MQ=255) cATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATc < 1:1576232/149‑1 (MQ=255) acacCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCAcc < 2:1689514/149‑1 (MQ=255) acacCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCAcc > 2:355076/1‑149 (MQ=255) caccacTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCAccc < 1:570314/149‑1 (MQ=255) accacTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCg > 2:1596864/1‑149 (MQ=255) accacTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCg > 1:854090/1‑149 (MQ=255) acTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCAt > 1:21404/1‑149 (MQ=255) tCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGc < 1:3932296/149‑1 (MQ=255) ccaccaTCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATAGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAAGTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCg > 1:4473600/1‑149 (MQ=255) caTCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGa > 1:2436248/1‑149 (MQ=255) caTCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGa > 1:4318611/1‑149 (MQ=255) gCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGa < 2:1784898/149‑1 (MQ=255) ccTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGAc < 2:4677791/149‑1 (MQ=255) gCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGt < 2:4601128/149‑1 (MQ=255) gCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGt < 2:4390887/149‑1 (MQ=255) ggTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGaa < 2:2353265/149‑1 (MQ=255) tCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATc < 1:2935638/149‑1 (MQ=255) gCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCaa > 2:3875870/1‑149 (MQ=255) cTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCaaa > 1:2276567/1‑149 (MQ=255) tcatcaGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATc < 1:2918592/149‑1 (MQ=255) atcaGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTa > 1:915125/1‑149 (MQ=255) tcaGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTaa > 2:4562972/1‑149 (MQ=255) tcaGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTaa > 1:771217/1‑149 (MQ=255) caGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTaaa < 1:3521638/149‑1 (MQ=255) caGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTaaa < 1:2567454/149‑1 (MQ=255) aGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAg > 2:1761740/1‑149 (MQ=255) cGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCt < 1:1454352/149‑1 (MQ=255) ggCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTg > 2:3613724/1‑149 (MQ=255) aaTGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCa > 1:607034/1‑149 (MQ=255) aaTGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCa > 1:1387257/1‑149 (MQ=255) aTGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCat > 2:1707411/1‑149 (MQ=255) tGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCatg < 2:4451730/149‑1 (MQ=255) gTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCatga < 2:2495382/149‑1 (MQ=255) ggTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGc > 2:3533467/1‑149 (MQ=255) ggTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGc > 2:228486/1‑149 (MQ=255) gTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGcc > 1:4602894/1‑149 (MQ=255) aCGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGcctcc < 2:4095228/149‑1 (MQ=255) tCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCg > 2:730194/1‑149 (MQ=255) tCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCg > 2:1297132/1‑149 (MQ=255) cGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCgg > 1:4482322/1‑149 (MQ=255) gAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGt < 2:922145/149‑1 (MQ=255) gAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGt > 1:3071469/1‑149 (MQ=255) gTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCACTCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCa > 1:2736438/1‑149 (MQ=255) gTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCa > 1:1946404/1‑149 (MQ=255) ggCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTCAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGt < 2:4295945/149‑1 (MQ=255) ggCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGt < 2:257056/149‑1 (MQ=255) gAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGAt < 2:4490367/149‑1 (MQ=255) gAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGAt < 1:3410881/149‑1 (MQ=255) aaaTCAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATg > 2:4147809/1‑149 (MQ=255) cAGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCgg < 1:3626360/149‑1 (MQ=255) aGACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGa > 1:2043650/1‑149 (MQ=255) gACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGAt < 1:3275503/149‑1 (MQ=255) gACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGAt < 1:19233/149‑1 (MQ=255) gACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGAt < 1:1003524/149‑1 (MQ=255) gACCGAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGAt < 1:3089278/149‑1 (MQ=255) gAGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAATATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCtt < 1:3564282/149‑1 (MQ=255) aGGCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCttt > 2:3294840/1‑149 (MQ=255) ggCTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTc > 2:1063035/1‑149 (MQ=255) cTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTg > 2:3378222/1‑149 (MQ=255) cTACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTg > 1:4267920/1‑149 (MQ=255) tACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGc > 2:1461115/1‑149 (MQ=255) tACGAATATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGc < 2:660850/149‑1 (MQ=255) aaTATGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCa > 1:2083229/1‑149 (MQ=255) atatGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAg > 2:4224507/1‑149 (MQ=255) atatGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAg > 2:4725151/1‑149 (MQ=255) atatGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAg > 2:2814027/1‑149 (MQ=255) tGCGGCGGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCAt > 1:3696391/1‑149 (MQ=255) gcggcgGCAATTTAAGTTCACGCTCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATa < 1:4223297/149‑1 (MQ=255) gcggcgGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATa > 1:1777630/1‑149 (MQ=255) gcggcgGCAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATa < 1:4366088/149‑1 (MQ=255) gcggcAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATACGt > 1:3099828/1‑149 (MQ=255) gcggcAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATACGt > 1:1275045/1‑149 (MQ=255) ggcAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATACGttt < 1:1794225/149‑1 (MQ=255) cAATTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATACGTTTCg > 2:1819510/1‑149 (MQ=255) aTTTAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATACGTTTCGcc > 2:2926690/1‑149 (MQ=255) tttAAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATACGTTTCGCCa > 2:2206887/1‑149 (MQ=255) | GGGCCGTGTGCAGCGCCCGCATATAGCGAGCGGCCATACACCACTTCCACCATCGCCTGCTTGGTCGCTTCATCAGCGGCAATGTAGGTGACGTCATCGGAGTCGGCAGAAATCAGACCGAGGCTACGAATATGCGGCGGCAATTTCAGTTCACGCGCAAAATCGGCGTTAACGGAGGCAATCACCCGCATAGCGGTGACAGACGGTCGAATCAAATCTAAAGCTGGCATGATGCCTCCTTATCGGGTCATGTTGATGCCGGATGCTTTCTGCTCCAGCATACGTTTCGCCA > CP009273/2549530‑2549821 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |