| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,598,122 | T→G | 8.1% | L306R (CTT→CGT) | hyfC → | hydrogenase 4, membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,598,122 | 0 | T | G | 8.1% | 621.2 / 5.6 | 269 | L306R (CTT→CGT) | hyfC | hydrogenase 4, membrane subunit |
| Reads supporting (aligned to +/- strand): ref base T (99/137); new base G (26/4); total (128/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.89e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 279 total aligned reads displayed.
CTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGGTTTTGTT > CP009273/2597974‑2598270 | ctcGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCt > 2:778611/1‑149 (MQ=255)ctcGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCt < 2:4008944/149‑1 (MQ=255)ctcGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCt < 2:1130293/149‑1 (MQ=255) cGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTAATAATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTg > 2:3689500/1‑149 (MQ=255) cctgcctgCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCa < 2:3906774/149‑1 (MQ=255) ctgcctgcTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCAt < 2:4157505/149‑1 (MQ=255) ctgcctgcTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCAt < 1:390384/149‑1 (MQ=255) gcctgcTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTAAACATGTGGACTGGCTTGGCTTCAGCCTTGCTGCGCGTGCATgg > 2:882900/1‑149 (MQ=255) cctgcTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATggg < 1:3639199/149‑1 (MQ=255) ctgctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGt < 1:1000328/149‑1 (MQ=255) tgctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGtc < 2:1006824/149‑1 (MQ=255) tgctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTTCTCAATAACCCAGTGACCAGGCTTGGCGTCATCCGTGCTGCGCGTGCATGGGtc > 1:539485/1‑149 (MQ=255) gACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCCTGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGtcttct > 2:2641055/1‑149 (MQ=255) gACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTTCTCAATAACCCAGTGACCTGGCGTGGCGTCAGCCGTGCTGCGCGTGCATGGGtcttct > 1:2209882/1‑149 (MQ=255) aCTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTg > 2:1926494/1‑149 (MQ=255) cTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTTCTAAATAAACAAGTGACCTGGCGTGGGGTAAGCCGTGCTGGGCGTTCATGGGTGTTCTgg > 1:861994/1‑149 (MQ=255) cTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAAc < 2:1747283/149‑1 (MQ=255) cTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCAGGCTTGGCTTCACCCTTGCTGCGCTTGCAGGGGGCTTCTGGTTAAc > 2:2750028/1‑149 (MQ=255) cTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTAATCAATAACCATGTGTCCAGGCTTGGGGTCAGCCCTGCTGCGCGGGCATGGGTGGTCTgggttac > 1:1013652/1‑144 (MQ=255) cGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCAGTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTc < 1:3479491/149‑1 (MQ=255) gTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCt < 2:3117476/149‑1 (MQ=255) cGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTaa < 1:2544595/149‑1 (MQ=255) cGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCGTGCATGGGTCTTCTGGTTAACCGGTCTGTaa < 1:2058054/149‑1 (MQ=255) ctgctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGTTTGGCTTCAGCCTTGCTGCGTTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAgg < 2:2336616/149‑1 (MQ=255) gctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTAATAAATAACCAATTGTCCAGGCGTGGCTTAAGCCTTGCTTCGCGTGGAGGGGTGTTGTGGTTAACCGGTCTGTAAGGAg > 1:976565/1‑149 (MQ=255) aaGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTAATAATTAACCAAGTGAACAGGCATGTCTTAACCCGTGCTGGGCGTGGCTGGGTCTTGTTGGTTACACGTCTGTTAGGAGCAca > 1:91906/1‑148 (MQ=255) ggTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGa < 1:4454493/149‑1 (MQ=255) ggTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACACAATAACCCAGTTACCAGGCGTGGCTTCAGCCGTGCTGCGCGTGCATGGGTCGTCTGGTTAACCGGTCTGTAAGGAGCACAGa > 1:1982904/1‑149 (MQ=255) ggTTTTGCTGATTTTTGGACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGa < 2:2521649/149‑1 (MQ=255) gTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCCTTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGAc < 2:4374732/149‑1 (MQ=255) gTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGAc < 1:622419/149‑1 (MQ=255) gTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATAAACCATGTGACCAGGCATGGCTTAAGCCATTCTTCGCGTGCATGGGTCGTCAGGTTAAACCGTCTGTAATGAGCACAGAc > 2:833501/1‑149 (MQ=255) gTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCAATAACCATGTGACCAGGCTTGGCGTCAGCCTTGCTGCGCGTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGAc > 2:2491247/1‑149 (MQ=255) gTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCAATAACCAAGTGACCAGGCGTGGCTTCAGCCATGCAGCGCTTGCAAGGGTCTTCTGGTTAACCCGTCTGTAAGGACCACAGAc > 2:2579605/1‑149 (MQ=255) gTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTAATCATTCACCATGTGACCTGGCGTGGCTTCAGCCTTGCTGGGCTTGCATGGGGCTTGTGGTTAACCGGTCTGTAAGGAGCACTGAc > 1:1888134/1‑149 (MQ=255) ttttGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACg < 1:4548859/149‑1 (MQ=255) tttGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACgg > 2:383601/1‑149 (MQ=255) ttGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGa < 1:4029076/149‑1 (MQ=255) cTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTACGCATTCACCCAGTGACCAGGCGTTGCTTCAGCCTTGCTGCGCATGCCTGGGTCTTCTGGGTAACCGGTCTGTAAGGAGCACTGACGGtata > 2:3256689/1‑149 (MQ=255) tttttGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTAACCCTGTGACCTGGCGTGGCTTCAGCCTTGCTGCGCTTGCCTGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGa > 2:4624916/1‑149 (MQ=255) ttttGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGaa < 1:2561097/149‑1 (MQ=255) gTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATc < 1:1846919/149‑1 (MQ=255) gTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATc < 1:4236816/149‑1 (MQ=255) gTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTACGCAATAACCAAGTGACCAGGCGTGGCGTCAGCCGTGGTGCGCGTGGAAGGGTGTTCTGGGTAAACGGTCTGTAATGAGCACGGAAGGAATATGGAAAATc > 2:2002552/1‑149 (MQ=255) tGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTAAACATTCACCAAGTGACCTGGCTTGGCTTCAGCCTTTCTGCGCGTGCATGGGTCTTCTGGGTAACCGGTCTGTAAGGTGCACAGAAGGAATATGGAAAATCTTGc > 2:2174075/1‑149 (MQ=255) ggCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTAACCATGTGACCTGGCGTGGCTTCAGCCTTGCTGCGCGTGCATGGGTCTTCTGGTTAAACGGTCTGTAAGGAGCACTGAAGGAATATGGAAAATCTTGct > 2:3788112/1‑149 (MQ=255) gCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGctc < 1:212179/149‑1 (MQ=255) gCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACACATTAACCCTGTGACCTGGCTTGGCTTCAGCCGTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATAAGGAAAATCTTGctc > 2:2352207/1‑149 (MQ=255) ccTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGctct < 2:2856490/149‑1 (MQ=255) ccTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGctct < 2:304078/149‑1 (MQ=255) tCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTTATCATTCACCATTTGACCTGGCTTGGCTTCAGCCGTTCTGCGCTTGGATGGGTCTTCTTGTTAACCGGTCTGTAAGGAGCACTGACGGAATTTGGAAAATCTTGctaaga > 2:2900209/1‑145 (MQ=255) cAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTgac < 1:2764241/149‑1 (MQ=255) aTCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTgacga < 1:4003676/149‑1 (MQ=255) gCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGt < 2:3424484/149‑1 (MQ=255) cAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGtt < 2:4256340/149‑1 (MQ=255) aGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTa < 1:1751503/149‑1 (MQ=255) aGAAAACACGCTGGCACGCGGGCGTTTTTTAATCAATGAACCAGTGACCAGGCTTGGGTTAAGCCGTGGTGCGCGTGCAGGGGTCGTGGGGTTAACCGGGCGGTAAGGAGCCCGGTGGGCATATGGGAAAAATTGGTCGGACGACGGTa > 2:1206992/1‑149 (MQ=255) gAAAACACGCTGGCACGCGGGCGTTTTTTACTCAGTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTAt < 2:4737104/149‑1 (MQ=255) aaaaCACGCTGGCACGCGGGCGTTTTGTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTAtt < 2:1771969/149‑1 (MQ=255) aaCACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCAGGCTTGGCGTCAGCCTTGCTGCGCGTGCAGGGGGCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGACTATGGAAAAGCTTGCGCGGACGACGTTAAtgc > 2:1526293/1‑149 (MQ=255) gCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCt < 2:1405554/149‑1 (MQ=255) cTGGCTCGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCGTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCtt < 2:3603752/149‑1 (MQ=255) cTGGCACGCGGGCGTTTTTTACTCATTCACCCTGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCtt < 2:2057247/149‑1 (MQ=255) cTGGCACGCGGGCGTTTTTTAATAAATAACCCTGTGACCTGGCTTGGCTTAAGCCATGCTGCGCTTGCATGGGTCTTCTTGTTAACCGGTCTTTAAGGAGAACAGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGccat > 2:1482224/1‑147 (MQ=255) ggCACGCGGGCGTTTTTTACTCATTCACCATGTTACCTGGCTTGGCTTCAGCCTTGCTGCGCTTTCATGGGTGTTCTGGTTAAACGGTCTGTTAGGAGCACTGTCGGAATATGGAAAATCTTGCTCTGACGACGGTATTGCTGCCtttt > 2:2984487/1‑149 (MQ=255) gCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTa < 1:1148903/149‑1 (MQ=255) aCGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATc < 1:1492367/149‑1 (MQ=255) cgGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGgc < 2:539485/149‑1 (MQ=255) cgGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGgc < 2:1244182/149‑1 (MQ=255) ttttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTg > 2:2482804/1‑149 (MQ=255) ttttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTg > 1:3673473/1‑149 (MQ=255) tttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTgg < 1:3262617/149‑1 (MQ=255) tttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTgg < 2:733745/149‑1 (MQ=255) tttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTgg > 2:242844/1‑149 (MQ=255) tttttACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTgg > 2:613580/1‑149 (MQ=255) cTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgttt < 1:4365639/149‑1 (MQ=255) tCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgtttc > 1:3454708/1‑149 (MQ=255) tCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgtgtc > 1:4119600/1‑149 (MQ=255) cATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgtttcg > 1:253259/1‑149 (MQ=255) aTTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgtttcgt < 2:3666598/149‑1 (MQ=255) ttCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgtttcgtt > 2:4321412/1‑149 (MQ=255) ttCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTATGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgtgtcgtt > 2:1807917/1‑149 (MQ=255) cACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGtttt < 1:1805730/149‑1 (MQ=255) ccATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCg > 2:2265529/1‑149 (MQ=255) tgtgACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCca > 2:2406944/1‑149 (MQ=255) gACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTTCTCTGACGACGTTATTGCTGCCTTTTATCGGAGCACTGGTCGTTTCGTTTTCGCCACaa < 1:1666079/149‑1 (MQ=255) gACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACaa < 1:2641055/149‑1 (MQ=255) gcttggcttCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCgg > 2:1858211/1‑149 (MQ=255) ttggcttCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGgc < 1:2283582/149‑1 (MQ=255) ttggcttCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGgc < 1:1422253/149‑1 (MQ=255) ttggcttCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGgc < 1:495652/149‑1 (MQ=255) tggcttCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGgcc < 1:2924671/149‑1 (MQ=255) tCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGa > 2:2813465/1‑149 (MQ=255) aGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTGTCTGTTTCGCCACAACGACGGGccgccgcaa > 1:2878978/1‑146 (MQ=255) ttGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATgggg > 2:2315615/1‑149 (MQ=255) gctgcGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATgggggg < 1:3137821/149‑1 (MQ=255) gctgcGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTATTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATgggggg < 2:4416014/149‑1 (MQ=255) gcTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTAGCCACAACCTCGGGCCGCCGAAAGGGGGGTTTTg > 1:1261607/1‑149 (MQ=255) cTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGGTTTTGt < 1:3294395/149‑1 (MQ=255) ttGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGGTTTTGtt < 2:1656733/149‑1 (MQ=255) | CTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACCATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTCTGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGGTTTTGTT > CP009273/2597974‑2598270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |