Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,697,617 C→A 8.6% intergenic (‑195/+77) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,697,6170CA 8.6% 798.3 / 28.1 233intergenic (‑195/+77)rnc/lepBRNase III/leader peptidase (signal peptidase I)
Reads supporting (aligned to +/- strand):  ref base C (129/82);  new base A (8/13);  total (137/96)
Fisher's exact test for biased strand distribution p-value = 6.07e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 235 total aligned reads displayed.

ACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCAT  >  CP009273/2697469‑2697765
                                                                                                                                                    |                                                                                                                                                    
     atatACAGGTTTCTGATAACTGGTTCGCTGCTGTTTCATTTTACCGGTATTTGGGCACCAACGCTGTTTGGTGTGCCGTGGCAACCTGGAGGTGCAAACCTTAAACTTCGGGGGAATATTATATACACAACGACGGGGGATGTCGTTAg                                                                                                                                                 <  1:4023827/149‑1 (MQ=255)
      tataCATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGc                                                                                                                                                >  1:3766153/1‑149 (MQ=255)
       ataCATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATTTGGGGACCACCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTGCGGGGTAATATTCTATACACAACGACGGGGGATGTCGTTAGcc                                                                                                                                               <  1:4660687/149‑1 (MQ=255)
       ataCATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCCGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGcc                                                                                                                                               <  2:688166/149‑1 (MQ=255)
        taCATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTCCCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCa                                                                                                                                              <  1:681417/149‑1 (MQ=255)
          cATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACg                                                                                                                                            >  2:887826/1‑149 (MQ=255)
          cATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACg                                                                                                                                            >  1:3192520/1‑149 (MQ=255)
          cATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACg                                                                                                                                            >  1:3192349/1‑149 (MQ=255)
            tGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTAGTTAGCCACggg                                                                                                                                          <  2:3864047/149‑1 (MQ=255)
                   gCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATTTGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTa                                                                                                                                   <  1:3954714/149‑1 (MQ=255)
                     tAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTAtc                                                                                                                                 <  2:4150066/149‑1 (MQ=255)
                     tAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTAtc                                                                                                                                 >  1:562183/1‑149 (MQ=255)
                       aCTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTAtctc                                                                                                                               >  1:2156049/1‑149 (MQ=255)
                          gCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCACCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGTGAATATTCTATACACAACGACGGGGGATGTAGTTAGCCACGGGAGATTTATCTCata                                                                                                                            <  2:1577089/149‑1 (MQ=255)
                          gCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCata                                                                                                                            >  2:2866329/1‑149 (MQ=255)
                          gCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCata                                                                                                                            <  2:1040612/149‑1 (MQ=255)
                             tCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCataaat                                                                                                                         >  1:784363/1‑149 (MQ=255)
                               gctgctGTTTCTTTTTACGGTTATATGGGGACCACGGGGGTTTCGTGTGCCTTGGCACCCGGTTGTTGCAAAAATTAAACTTCGGGGGATTATTCTATCCACAACGACGGGGGATGTAGTTAGCCACGGGAGATTTATCTCataaataa                                                                                                                       <  1:3653095/149‑1 (MQ=255)
                               gCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCataaataa                                                                                                                       >  2:78686/1‑149 (MQ=255)
                                    agtttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTACACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCAc                                                                                                                  <  2:1795968/149‑1 (MQ=255)
                                    agtttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCAc                                                                                                                  <  1:2779116/149‑1 (MQ=255)
                                    agtttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCAc                                                                                                                  <  2:3303631/149‑1 (MQ=255)
                                     gtttctttttACCGGTTTTGGGGGACCAACGCTGTTTCGTGTGCCGTGGCACCCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATCCACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACg                                                                                                                 <  1:3406329/149‑1 (MQ=255)
                                     gtttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACg                                                                                                                 >  1:1184465/1‑149 (MQ=255)
                                     gtttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACg                                                                                                                 >  1:1315164/1‑149 (MQ=255)
                                     gtttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACg                                                                                                                 >  1:2845563/1‑149 (MQ=255)
                                      tttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTAGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGt                                                                                                                <  2:1516161/149‑1 (MQ=255)
                                      tttcagttcACCGGTAGATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCTCCCTTCAACTTCGTGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCAAGGTTGATTTATCTCATATTTTATTCAGGt                                                                                                                <  2:2692623/149‑1 (MQ=255)
                                       ttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGtt                                                                                                               >  1:3756995/1‑149 (MQ=255)
                                       ttcagtttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGtt                                                                                                               >  2:851875/1‑149 (MQ=255)
                                          agtttACCGGTAGATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTc                                                                                                            <  2:2942580/149‑1 (MQ=255)
                                             ttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGcc                                                                                                         <  2:47408/149‑1 (MQ=255)
                                             ttACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGcc                                                                                                         <  2:47475/149‑1 (MQ=255)
                                               aCCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCAt                                                                                                       >  1:2595487/1‑149 (MQ=255)
                                                  ggTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAAc                                                                                                    <  2:1720660/149‑1 (MQ=255)
                                                   gTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACg                                                                                                   >  1:618544/1‑149 (MQ=255)
                                                     atatGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGc                                                                                                 <  1:4612022/149‑1 (MQ=255)
                                                      tatGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCg                                                                                                >  1:3920044/1‑149 (MQ=255)
                                                        tGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGAc                                                                                              >  2:1227992/1‑149 (MQ=255)
                                                         ggggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACa                                                                                             >  1:734875/1‑149 (MQ=255)
                                                             aCCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGt                                                                                         <  2:1677967/149‑1 (MQ=255)
                                                             aCCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGt                                                                                         >  1:2891553/1‑149 (MQ=255)
                                                              ccAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTg                                                                                        <  1:1044469/149‑1 (MQ=255)
                                                               cAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGACTATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGa                                                                                       >  2:2883488/1‑149 (MQ=255)
                                                               cAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACCACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGa                                                                                       <  2:1261061/149‑1 (MQ=255)
                                                                aaCGCTGTTTCGTGTGCCGTGGCAACCTGGTGGTGCAACCCTAAAACTTCGGGGTAATATTCTAAAACCAACGACGGGGGATGTAGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGaa                                                                                      <  1:4440650/149‑1 (MQ=255)
                                                                aaCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGaa                                                                                      <  1:4708111/149‑1 (MQ=255)
                                                                aaCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGaa                                                                                      <  2:3569375/149‑1 (MQ=255)
                                                                 aCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAAc                                                                                     >  1:1416589/1‑149 (MQ=255)
                                                                   gCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGa                                                                                   >  2:3839754/1‑149 (MQ=255)
                                                                     tGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAg                                                                                 >  1:741105/1‑149 (MQ=255)
                                                                       tttCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGAt                                                                               >  1:1752992/1‑149 (MQ=255)
                                                                            tgtgCCGTGGCAACCTGGAGGTGCCAACCTTAAACTGCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTa                                                                          <  2:2558083/149‑1 (MQ=255)
                                                                             gtgCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTAt                                                                         >  1:1632333/1‑149 (MQ=255)
                                                                             gggcggTGGCAACGTGGTGGTGCAAACCTTAACGTGGGGGGTATTTTTATATACACACCGAGGGGGGCTGTAGTTAGCCAGGGGTGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAAGGTGAACGAAGATGGCTAt                                                                         <  1:666393/144‑1 (MQ=255)
                                                                                ccGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTaa                                                                      >  2:2476013/1‑149 (MQ=255)
                                                                                   tGGCAACCGGGAGGTGCCACCCTTAACCTGCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACTTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATgg                                                                   <  2:3310901/149‑1 (MQ=255)
                                                                                    ggCAACCTGGAGGTGCCAACCTTAACCTTCGGGGGAATTTTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGa                                                                  <  2:3669781/149‑1 (MQ=255)
                                                                                     gCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGAt                                                                 >  2:3876526/1‑149 (MQ=255)
                                                                                       aaCCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTAGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgc                                                               >  2:2249607/1‑149 (MQ=255)
                                                                                        aCCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgcc                                                              >  1:2259423/1‑149 (MQ=255)
                                                                                          cTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgccgc                                                            >  1:2957695/1‑149 (MQ=255)
                                                                                            ggAGGTGCCAACTTTAACGTTGGGGGTAATTTTATATCCCCAACGAGGGGGGATGTCGTTAGCCAGGGTAGATTTATCTAATAAATAATTCACGTTGTCGCCATAAGGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCa                                                          <  2:3201838/149‑1 (MQ=255)
                                                                                            ggAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCa                                                          >  2:401287/1‑149 (MQ=255)
                                                                                            ggAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCa                                                          >  2:4778759/1‑149 (MQ=255)
                                                                                                 tGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCg                                                     >  1:3451796/1‑149 (MQ=255)
                                                                                                   ccAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGAc                                                   >  1:2564532/1‑149 (MQ=255)
                                                                                                   ccAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGAc                                                   >  1:1018477/1‑149 (MQ=255)
                                                                                                    cAACCTTAAACTTCGGGGGAATATTCTATAAACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGAGACt                                                  >  2:1735483/1‑149 (MQ=255)
                                                                                                     aaCCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACtt                                                 >  2:1467702/1‑149 (MQ=255)
                                                                                                       cgttAAACTGGGGGGGAATATTGTATACCCAACGACGGGGTATGTCGTTAGCCACGGGAGTTTTTTCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTaa                                               <  2:1376305/147‑1 (MQ=255)
                                                                                                       ccTTAACCTTGGGGGTAATATACTATACACAACGACGGGGGATGTCGTTAGCCACGGGATATTTATCTCATAAATAATTCACGTTGTCGCAATAACGGCGAAAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTaa                                               <  1:3136798/149‑1 (MQ=255)
                                                                                                       ccTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTaa                                               >  2:504602/1‑149 (MQ=255)
                                                                                                       ccTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTaa                                               <  2:3766153/149‑1 (MQ=255)
                                                                                                            aaCTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCa                                          <  2:3040664/149‑1 (MQ=255)
                                                                                                               ttCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                       >  1:2995544/1‑149 (MQ=255)
                                                                                                               ttCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                       >  2:2032825/1‑149 (MQ=255)
                                                                                                                  gggggAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAg                                    >  1:3299687/1‑149 (MQ=255)
                                                                                                                   gggtAATATTCTATACACAACGACGGGGGTTGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACTTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGt                                   <  2:459290/149‑1 (MQ=255)
                                                                                                                   ggggAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGt                                   >  2:590000/1‑149 (MQ=255)
                                                                                                                    ggtattatTCTATACACAACGACGGGGTATGTCGTTAGCCACGGTAGATTTATCTAATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTc                                  <  1:3059903/144‑1 (MQ=255)
                                                                                                                    gggAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTc                                  >  2:2906783/1‑149 (MQ=255)
                                                                                                                    gggAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTc                                  >  2:1460171/1‑149 (MQ=255)
                                                                                                                     ggAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCg                                 >  2:1149232/1‑149 (MQ=255)
                                                                                                                         tatTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCa                             >  1:302135/1‑149 (MQ=255)
                                                                                                                           ttCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCAtt                           >  2:3079066/1‑149 (MQ=255)
                                                                                                                           ttCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCAtt                           >  2:2598523/1‑149 (MQ=255)
                                                                                                                           ttCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCAtt                           <  2:741149/149‑1 (MQ=255)
                                                                                                                            tCTATACACAACGACGGGGGATGTCGTTAGCCACGGGATATTTATCTCATAAATAATTCACGTTGGCGCCATAACGGCTACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTc                          <  2:2794730/149‑1 (MQ=255)
                                                                                                                              tataCACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGc                        >  1:2317576/1‑149 (MQ=255)
                                                                                                                                taCACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCct                      >  2:4405478/1‑149 (MQ=255)
                                                                                                                                taCACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCct                      >  2:2783180/1‑149 (MQ=255)
                                                                                                                                aaaacaAGGAGGGGGTATTTATTTAGCCTCGGTATATTTATCTAATAATTAATTCACTTTGTCGCAAAACCGGCTAAAACGTTAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCct                      <  1:2422262/146‑1 (MQ=255)
                                                                                                                                  cacaACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCcttc                    >  2:532455/1‑149 (MQ=255)
                                                                                                                                       cgcggggggATTTCGTTAGCCACGTGATATTTATCTAATAAATAATTCACGTTGTCGCAATAACGGCTACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCt               <  1:1426710/145‑1 (MQ=255)
                                                                                                                                        gacgGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCtt              >  1:2281006/1‑149 (MQ=255)
                                                                                                                                        gacgGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGGTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCtt              >  2:1175510/1‑149 (MQ=255)
                                                                                                                                               gATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAg       >  1:3454405/1‑149 (MQ=255)
                                                                                                                                                aTGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGc      <  2:3486954/149‑1 (MQ=255)
                                                                                                                                                   tCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCa   >  2:2129573/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
ACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCAT  >  CP009273/2697469‑2697765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: