| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,879,222 | C→A | 6.6% | E453* (GAA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,879,222 | 0 | C | A | 6.6% | 1113.8 / 32.2 | 301 | E453* (GAA→TAA) | ygcB | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| Reads supporting (aligned to +/- strand): ref base C (154/126); new base A (13/8); total (167/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 306 total aligned reads displayed.
TATGCAGACCATAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAA > CP009273/2879075‑2879370 | aGACCATAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAAAAACACTCCCTCCCACATCAGCCTGAGCCGTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATcaac > 1:2792572/1‑149 (MQ=255) gACCATAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATcaaca > 1:3554838/1‑149 (MQ=255) aCCATAAGTATCCAGAAGTTTCTGTTTTTTTTTCATTGGTAGGGTTGCGGGAAGAAGAATAACACTCCCTCCCACAACAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGGTCATATAGGTGTCGTAAGCATGAACATAATcaacaa > 1:4123407/1‑149 (MQ=255) aCCATAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTAATcaacaa > 2:4696210/1‑149 (MQ=255) ccATAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTAATCAACAAt < 2:312743/149‑1 (MQ=255) cATAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAAtt < 2:464477/149‑1 (MQ=255) aTAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTTAGCACTTCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTa > 2:438135/1‑149 (MQ=255) aTAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTa > 2:4312028/1‑149 (MQ=255) aGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTaaaa < 2:906767/149‑1 (MQ=255) aGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTaaaa < 1:2855370/149‑1 (MQ=255) gTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAac < 1:3287557/149‑1 (MQ=255) cAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTc > 2:3891290/1‑149 (MQ=255) aGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTACCTCCCACATCAGCCTGAGCCTTGAGCACAGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCAAGAAATTCATCAACAATTAAAACACTTCg > 2:3038379/1‑149 (MQ=255) ttCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAAt > 2:1885146/1‑149 (MQ=255) ttCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAAt < 1:2041096/149‑1 (MQ=255) tCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAAtt < 1:1254108/149‑1 (MQ=255) gTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTccc > 2:3385444/1‑149 (MQ=255) tttttGTTTCATTGGTAGGGTTGCGGAAAGAAGAGTAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCa > 1:1361900/1‑149 (MQ=255) tttttGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCa > 1:3422910/1‑149 (MQ=255) ttttGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCaa > 1:3700375/1‑149 (MQ=255) tttGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCaaa < 2:119019/149‑1 (MQ=255) gTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCa < 1:1883289/149‑1 (MQ=255) aTTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGAt < 1:1532930/149‑1 (MQ=255) ttGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATTAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATa > 2:501661/1‑149 (MQ=255) ttGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATa > 2:4279224/1‑149 (MQ=255) tGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATaa < 2:2243388/149‑1 (MQ=255) ggTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATaaa < 2:3971442/149‑1 (MQ=255) gTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTAGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAg > 1:4215818/1‑149 (MQ=255) tAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGc < 2:278134/149‑1 (MQ=255) aGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCg > 2:142167/1‑149 (MQ=255) ggTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGgt < 1:929749/149‑1 (MQ=255) tGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGtt < 2:4371714/149‑1 (MQ=255) cGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTa < 2:102794/149‑1 (MQ=255) aaaGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACt < 1:2458335/149‑1 (MQ=255) aaaGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACt < 1:3614876/149‑1 (MQ=255) aaaGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCAGCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACt > 2:1308888/1‑149 (MQ=255) agaagaATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTgg > 2:72106/1‑149 (MQ=255) agaaTAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCaa > 2:4604537/1‑149 (MQ=255) gaaTAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAAt > 2:1255693/1‑149 (MQ=255) aaTAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATa < 1:967844/149‑1 (MQ=255) aaTAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATa < 1:1571650/149‑1 (MQ=255) acTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGata < 1:1140313/149‑1 (MQ=255) acTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGata < 1:4547105/149‑1 (MQ=255) ccctcccACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTAATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCa > 1:3499135/1‑149 (MQ=255) tcccACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTAATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAaca > 1:4649843/1‑149 (MQ=255) cccACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAacac > 2:2930605/1‑149 (MQ=255) ccACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTAATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACAcc < 1:4468599/149‑1 (MQ=255) acaTCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTg < 1:3861385/149‑1 (MQ=255) caTCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGa < 1:2957308/149‑1 (MQ=255) tCAGCCGGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACACTTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATc < 2:1142211/149‑1 (MQ=255) cAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCa < 2:4478307/149‑1 (MQ=255) aGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCACACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCaa < 2:2016664/149‑1 (MQ=255) aGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCaa > 1:1971706/1‑149 (MQ=255) gCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAAt > 1:613945/1‑149 (MQ=255) gCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAAt < 2:656100/149‑1 (MQ=255) gCCTGAGCCATGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAAt < 2:2168052/149‑1 (MQ=255) tGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGt > 1:4329761/1‑149 (MQ=255) gAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTg > 1:2738908/1‑149 (MQ=255) gacTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAAAACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATAACGATATCAACACCTGATCAATAGTGCa > 1:1842584/3‑149 (MQ=255) cTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCaaa > 2:3264669/1‑149 (MQ=255) cTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCaaa < 1:4021831/149‑1 (MQ=255) cTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCACAAACCACGGATAAAGCGGTGTTTAACTGGCAATAACGATATCAACACCTGATCAATCGTGCaaa > 2:980122/1‑149 (MQ=255) ttGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAAc < 1:1769855/149‑1 (MQ=255) gAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGc < 1:845336/149‑1 (MQ=255) tGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGAttt < 1:472953/149‑1 (MQ=255) tGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGAttt > 1:68750/1‑149 (MQ=255) gCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTg > 2:4275236/1‑149 (MQ=255) cTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGcc > 2:2034336/1‑149 (MQ=255) tCCATCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTACCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGAGCAAACGCAGATATGacc > 1:164172/1‑149 (MQ=255) tCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGccc > 1:2078593/1‑149 (MQ=255) cAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCaa > 1:3414344/1‑149 (MQ=255) cAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTAATCAACAATTAAAACACTTCGACCACTTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCaa < 2:1583478/149‑1 (MQ=255) aGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAg > 2:3354233/1‑149 (MQ=255) gCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGa > 1:1826152/1‑149 (MQ=255) cAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGaa > 2:2731780/1‑149 (MQ=255) gCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAaca > 2:1114635/1‑149 (MQ=255) ccGTTCATATAGGTGTCGTAAGCACGAACTACATCAACAATTAAAACACTACGACCAATTCCCAAACCACGGATAAAGCGTTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAacac < 2:1930303/149‑1 (MQ=255) gTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACtt > 2:2344554/1‑149 (MQ=255) ttCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACttt > 2:207764/1‑149 (MQ=255) cATATAGGTGTCGTAAGCATGAACTTCACCAACAACTAAAACACTTCGACCACTTCCCAACCCACGCATAAAGCGGTGTTTAACGGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCt < 2:1728906/149‑1 (MQ=255) tataGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTa > 1:3355330/1‑149 (MQ=255) ataGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTAt < 2:1763828/149‑1 (MQ=255) taGGTGTCGTAATCATGAACTTCATAAACAATTAAAACACTTCGACCAATTCACAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTAtt > 1:4781684/1‑149 (MQ=255) taGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTAtt > 1:4045555/1‑149 (MQ=255) taGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTAtt > 2:1521052/1‑149 (MQ=255) taGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATACCCACACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTAtt < 2:3641277/149‑1 (MQ=255) taGGTGTCGTAAGCATGAACTTAATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGTATACAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTAtt < 1:2207245/149‑1 (MQ=255) gtgtCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAAGACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCt < 2:3397458/149‑1 (MQ=255) tCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTtg < 2:3562007/149‑1 (MQ=255) tCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTtg > 1:3259110/1‑149 (MQ=255) gTAAGCATGAACTTAATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTtgtg > 1:2429378/1‑149 (MQ=255) tAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGa > 2:731394/1‑149 (MQ=255) aaGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGAc > 1:1500524/1‑149 (MQ=255) gCATGAACTTAATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACaa > 1:3790133/1‑149 (MQ=255) aTGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAAcc > 1:4154154/1‑149 (MQ=255) tGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCa > 2:420739/1‑149 (MQ=255) gAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCAc < 1:2338471/149‑1 (MQ=255) aCTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTg > 1:2481370/1‑149 (MQ=255) ttCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGac > 2:3834971/1‑149 (MQ=255) catcaACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGacaa < 2:1826500/149‑1 (MQ=255) | TATGCAGACCATAAGTATCCAGAAGTTTCTGTTTTTGTTTCATTGGTAGGGTTGCGGAAAGAAGAATAACACTCCCTCCCACATCAGCCTGAGCCTTGAGCACTGCCTCCAGCAAGCCGTTCATATAGGTGTCGTAAGCATGAACTTCATCAACAATTAAAACACTTCGACCAATTCCCAAACCACGGATAAAGCGGTGTTTAACTGGCAATACCGATATCAACACCTGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAA > CP009273/2879075‑2879370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |