| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,191,153 | C→A | 10.4% | A616A (GCG→GCT) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,191,153 | 0 | C | A | 10.4% | 1102.5 / 65.8 | 316 | A616A (GCG→GCT) | glnE | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| Reads supporting (aligned to +/- strand): ref base C (137/146); new base A (16/17); total (153/163) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 322 total aligned reads displayed.
ATTTGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAACGCGCCAGCTGGC > CP009273/3191007‑3191301 | agttGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAgcgc < 2:1793774/147‑1 (MQ=255)aTTTGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAgcgc < 1:1687200/149‑1 (MQ=255)aTTTGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAgcgc > 2:3382830/1‑149 (MQ=255) tttGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGcc > 2:1179892/1‑149 (MQ=255) tttGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGcc > 1:2567003/1‑149 (MQ=255) tttGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGcc > 1:4244759/1‑149 (MQ=255) ttGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCt > 1:2878716/1‑149 (MQ=255) aCCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAg > 1:3253289/1‑149 (MQ=255) cccACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGc > 2:2690631/1‑149 (MQ=255) ccACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCt > 2:2724025/1‑149 (MQ=255) aCGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGt > 2:2863837/1‑149 (MQ=255) ctgctgAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGct > 1:4118156/1‑149 (MQ=255) gctgAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGctct > 2:2371473/1‑149 (MQ=255) gctgAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGctct < 1:901141/149‑1 (MQ=255) aaCGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGt < 2:2135079/149‑1 (MQ=255) aaCGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGt < 2:4533797/149‑1 (MQ=255) acgacgGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTc > 2:3912623/1‑149 (MQ=255) acgacgGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTc > 1:720197/1‑149 (MQ=255) cgacgGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTACGTCa > 2:2288761/1‑149 (MQ=255) gacgGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCAt < 1:3536860/149‑1 (MQ=255) cgGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCt < 1:3436606/149‑1 (MQ=255) cgGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCt < 1:2746913/149‑1 (MQ=255) gCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTc > 1:165475/1‑149 (MQ=255) gCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTc < 2:4721035/149‑1 (MQ=255) gCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTc > 1:3928044/1‑149 (MQ=255) gCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTc < 2:524013/149‑1 (MQ=255) aTCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCg < 1:1775123/149‑1 (MQ=255) cTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGc < 1:2112813/149‑1 (MQ=255) cATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCAcgc > 1:3615162/1‑149 (MQ=255) ggCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCgca > 1:3345973/1‑149 (MQ=255) gccagccaGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCTCGCGCAGCAAATa < 2:1884908/149‑1 (MQ=255) cagccagGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCGAGCTGGTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACt < 2:2114853/149‑1 (MQ=255) gccagGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTgg > 2:765206/1‑149 (MQ=255) gccagGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTgg < 1:1150500/149‑1 (MQ=255) ccagGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGgc < 1:1475340/149‑1 (MQ=255) agGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATACGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGgcgc > 2:4243970/1‑149 (MQ=255) ttAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAAc > 2:2021348/1‑149 (MQ=255) ttAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAAc < 2:3579316/149‑1 (MQ=255) tAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCGGGTGCTCGTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCACCt > 2:4161297/1‑149 (MQ=255) gTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCAt > 1:594641/1‑149 (MQ=255) gTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCAt < 1:309939/149‑1 (MQ=255) tGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCACAGCAAATACTGGCGCAACTCATc > 2:817314/1‑149 (MQ=255) aTCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATcgc > 1:1742380/1‑149 (MQ=255) aTCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATcgc < 2:1313200/149‑1 (MQ=255) cTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTa < 2:1440765/149‑1 (MQ=255) tCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAg > 2:1102447/1‑149 (MQ=255) tCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAg > 2:3291517/1‑149 (MQ=255) cACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAgg < 1:543084/149‑1 (MQ=255) aCTTTCATCACCGGTAGCGTACCGGNGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGc < 1:1295133/149‑1 (MQ=255) ttCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATc < 2:3196464/149‑1 (MQ=255) catcaCCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCgg > 1:2855007/1‑149 (MQ=255) atcaCCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGt < 2:4004845/149‑1 (MQ=255) tcaCCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTc > 2:3123866/1‑149 (MQ=255) caCCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTCGGCATCGGTCg > 2:693294/1‑149 (MQ=255) gTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTc > 1:455431/1‑149 (MQ=255) tAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCg < 2:3950661/149‑1 (MQ=255) aGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCgg > 2:1539955/1‑149 (MQ=255) gCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCCGCAAATACTGGCGCACCTCATCGCGGTAGGCATCGGTCGCCGTCGGc > 2:2835135/1‑149 (MQ=255) gTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTg < 2:4118156/149‑1 (MQ=255) tACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTgg > 1:713795/1‑149 (MQ=255) tACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTgg > 2:4077723/1‑149 (MQ=255) aCCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGt < 2:903384/149‑1 (MQ=255) ccGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTa > 2:2162523/1‑149 (MQ=255) ccGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTa > 2:1222839/1‑149 (MQ=255) ccGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTa < 2:1691559/149‑1 (MQ=255) cGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTaa > 2:538894/1‑149 (MQ=255) gCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAg < 1:1039673/149‑1 (MQ=255) tatCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCTTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGgtg > 2:3760127/1‑149 (MQ=255) tatCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTACAGGgtg > 1:3610876/1‑149 (MQ=255) tatCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGgtg > 2:3078603/1‑149 (MQ=255) atCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGgtgt < 1:4419213/149‑1 (MQ=255) atCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGgtgt > 2:321467/1‑149 (MQ=255) tCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGtt < 2:2779516/149‑1 (MQ=255) tCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCGTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGtt < 2:4377960/149‑1 (MQ=255) cGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTg < 1:1436330/149‑1 (MQ=255) tGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGAt > 1:523597/1‑149 (MQ=255) tGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGAt > 1:2337820/1‑149 (MQ=255) tGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGAt < 2:622727/149‑1 (MQ=255) cgATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGc < 2:861553/149‑1 (MQ=255) cGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTc < 1:3853709/149‑1 (MQ=255) tAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCAt > 2:1739821/1‑149 (MQ=255) aaCAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATc > 2:1039/1‑149 (MQ=255) cAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCa < 2:4506791/149‑1 (MQ=255) gCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGc < 2:3467659/149‑1 (MQ=255) gCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGc < 2:1993962/149‑1 (MQ=255) gcgcCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCaat > 1:1704421/1‑149 (MQ=255) gcgcCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCaat < 2:4589626/149‑1 (MQ=255) ccTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCaataat < 2:2566833/149‑1 (MQ=255) cTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATg < 1:4464395/149‑1 (MQ=255) cTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATg > 2:1895638/1‑149 (MQ=255) cTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGAGCGAGCACTTCATCCAGCAATAATg > 1:3015603/1‑149 (MQ=255) tttGAACTGACGCAGAGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGAt > 1:2248807/1‑149 (MQ=255) ttGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATa < 1:4125304/149‑1 (MQ=255) gAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAAc < 1:332864/149‑1 (MQ=255) gAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAAc < 1:4677804/149‑1 (MQ=255) tGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAACgcgc < 2:444662/149‑1 (MQ=255) aCGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAACGCGCCa > 1:2015060/1‑149 (MQ=255) cGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAACGCGCCAg < 2:2947789/149‑1 (MQ=255) cAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAACGCGCCAgct < 2:2192448/149‑1 (MQ=255) aGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAACGCGCCAgctg > 2:1416872/1‑149 (MQ=255) | ATTTGAACCCACGCCTGCTGAACGACGGCATCTATCATGGCTTCCGCCAGCCAGGTTAAGTGATCGCTCACTTTCATCACCGGTAGCGTACCGGCGATATCCGCTGCGGCGATGCGTAACAGCTGCGCCTGTTTGAACTGACGCAGCGCCTCAAGCTGTTGCTCTTCGTCATCTTCCGGCACGCGCAGCAAATACTGGCGCAACTCATCGCGGTAGGCATCGGTCGCCGTCGGCTGGTAAAGGGTGTTTGGATCGAGCAATTCATCCAGCAATAATGGATAACGCGCCAGCTGGC > CP009273/3191007‑3191301 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |