| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3904837 = | 316 (1.020) | 20 (0.060) | 12/278 | NT | 6.0% | coding (49/1041 nt) | pstS | periplasmic phosphate binding protein, high‑affinity |
| ? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
ATTCCTTACATATAACTGTCACCTGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3904973‑3904837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCG > CP009273/4487998‑4488146 ATTCCTTACATATAACTGTCACCTGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGTATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCGTCTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGTCTGGCCCCC > 2:5274002/1‑150ATTCCTTACATATAACTGTCACCTGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCC > 2:5274081/1‑150 CTGTCACCTGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAA > 1:271845/1‑150 CTGTCACCTGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAA > 1:398614/1‑150 CTGTCACCTGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAA > 1:398816/1‑150 TCACCTGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCA < 1:5432592/150‑1 TGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATC < 2:3227878/150‑1 TGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATC < 2:3227559/150‑1 ATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA < 1:5319947/150‑1 TTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGT < 2:3887598/150‑1 TTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGT < 2:3887592/150‑1 CCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA < 2:1818204/150‑1 AACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTA > 2:791895/1‑150 AACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTA > 2:3146448/1‑150 CAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTT < 1:4579592/150‑1 CAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTT < 1:4579323/150‑1 ATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG > 2:4000603/1‑150 CCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACG < 1:462925/150‑1 GCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGAC < 2:5376827/150‑1 GCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGAC < 2:5376851/150‑1 aaatgAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAA > 1:354015/6‑150 TTAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGA > 2:3312758/1‑150 TAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGAT > 2:1300897/1‑150 TAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGAT > 1:992845/1‑150 TAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGAT > 1:5169160/1‑150 TAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGAT < 1:3441236/150‑1 TAT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGAT > 1:2165456/1‑150 AT‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATC > 2:3143609/1‑150 T‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCG < 2:1535467/150‑1 T‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCG > 1:3880322/1‑150 ATTCCTTACATATAACTGTCACCTGTTTGTCCTATTTTGCTTCTCGTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3904973‑3904837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCG > CP009273/4487998‑4488146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |