Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 161,068 | A→C | 31.1% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 161,068 | 0 | A | C | 31.1% | 56.3 / 29.4 | 76 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
Reads supporting (aligned to +/- strand): ref base A (22/30); new base C (4/19); total (26/50) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.39e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160920‑161217 | cGTGAGGTGCAAAAAGAGATTAATGGGGGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATAAGGCACCGACGCGACGGACGAAAAATTATACGTATGGTTGGTTTT‑ATCCCTCTCCCTGTGGGTGAGGGCCGGGGT‑GAGGGCAt < 2:901269/150‑1 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCAt > 2:332881/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCAt > 2:332862/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCAt > 2:3101194/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCAt > 2:4227478/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCa > 2:3343716/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCa > 2:214988/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCa > 2:578331/1‑150 (MQ=255) cAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCa > 1:3190486/1‑150 (MQ=255) aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACg > 2:3941021/1‑150 (MQ=255) atgtgaTTAATGGGCTTTATCCCAAACTTGTGTGGCGGGACGACCCGGCAAATACTGCACCGAGGCGCCGGACTAAAATTTTTTCGTATGGTTGGTTTT‑CTCCCTCTCCCGGTGGGTGTGGGCGGGGGT‑GTGGGCATCAGCGCGCACGtt < 2:4562740/146‑1 (MQ=255) aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCCTCAGCGCGCACggg > 1:3206597/1‑148 (MQ=255) aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCCTCAGCGCGCACGtg > 1:1927950/1‑149 (MQ=255) aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGtg > 2:1906207/1‑149 (MQ=255) gagaTGAACGGGCGTTATCCCAAACATGTCGGGCGGGACGACCCGGAAAATACTGCACCGACGCGACGGACTAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCGTCAGCGCGCACGTtca < 2:3304606/150‑1 (MQ=38) gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGtggg > 2:5446929/1‑147 (MQ=255) agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCACATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCCCGtggcc > 2:4722889/1‑146 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTCTTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGtgggccc > 2:528734/1‑144 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCCTCAGCGCGCACgggggccc > 2:528884/1‑143 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGtggcccca > 2:2762481/1‑143 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTgtacccg > 1:1691975/1‑149 (MQ=255) aaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCCTCAGCGCGCACGTtggcccacac > 1:4534913/1‑150 (MQ=255) ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTggacccaccccca > 2:3467778/1‑149 (MQ=255) gctttACCCAAAACTGGTCGGCCCGGCCGCCCCGCCAAATACGGCACCGACGCGAGGTACTAAAAATTATTCGTAGGTTTGTTTTT‑CCCCCTCTCCCTGGGGGCGTGGGCCGGGTT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTa < 2:2695287/147‑1 (MQ=255) cGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTgcccccgcccccaca > 2:826507/1‑147 (MQ=38) aaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGGCCCCCCACCCAAAaccacaacca > 2:3312028/1‑143 (MQ=37) aaCATGACTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACTAAAAATTATTCTAATGGTTGGTTTT‑CACCCTCTCCCTGTGGGTGCGGGCCGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCt < 2:5484097/150‑1 (MQ=255) tgtgtgGCCGGACGCCCCGGAAAATCCGGCACCGACGCGCGGGACTAAAATGTTTTCGTACGGTTGTTTTT‑CCCCCTCGCCGTGTGGGAGCGGGCCGGGGT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:359601/150‑1 (MQ=255) ggggCCGGACGCCCGGTCAAACACTGCACCGACGCGAGGGACTAAAATTTTTTCGTATGGTTGTTTTT‑CGCCCGCCCCGGGGGGGTGCGGGCGGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGga < 2:370467/148‑1 (MQ=255) cTGGCCGGACGCCCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGTTTTT‑CTCCCTCACCCTGTGGGAGTGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGga < 2:4593020/150‑1 (MQ=255) cTGGCCGGACGACCCGGCAAATACTGCACCGCCGCGAGGGACGAAAAATTATTCGTAAGGTTGGTTTG‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGga < 2:5075689/150‑1 (MQ=255) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCCGCGCGCACGTGGGCCCCCCCCCCAACCCCCCCCCCCCAGGGAGCgggg > 2:4421334/1‑150 (MQ=25) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGCACCCACACCCAAACCCACACCCACAACGGCGAgggg > 2:4584613/1‑150 (MQ=37) gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTGGACCCGCACCCAAAACCACAACCGCAAGGGGGAggggt > 1:2677222/1‑149 (MQ=37) cgacCCGCCAAACACTGCCCCGACGCGACGCACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCGCTCCCTGGGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 2:798989/150‑1 (MQ=38) ccccgcaaaaTACGCCCCCGACGCGACGCACCAAAATTTATCCGTATGGTGGGTTTT‑CACCCTCTCCGTGGGGGTGGGGGCCGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGa < 1:4059100/143‑1 (MQ=255) acCCGGCAAATACTGCACCGACGCGACGGACGAAAATGTATTCGTACGGTTGGTTTT‑CTCCCACGCCGTGTGGGAGTGGGCCGGGGT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGa < 2:4085070/150‑1 (MQ=255) cccGCCAAATACGGCCCCGCCGCGAGGCACTAAAATGTTTTCGTATGGTTGGTTTC‑CGCCCGCGCCGTGGGGGAGTGGGCGGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAt < 2:2226669/150‑1 (MQ=255) cacctACGGCCCCGCCGCCCCGGACGAAAAAGTTTGCGTACGGTTGGTTTG‑CCCCCTCGCCCGGTGGGGGCGGGCCGGGGT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGc < 2:497645/146‑1 (MQ=255) aaaaTACGGCCCCGACGCGCCGGACCAAAATGTATTCGAAGGGTTGGTTTT‑CCCCCTCACCCTGTGGTAGCGGGCCGGGGT‑GAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGc < 2:630936/149‑1 (MQ=255) ctccACCGCCGCGCCGGACCAAAATTTATTGTTAGGTTTTTTTTT‑CCCCCCCCCCGTGTGGGAGGGGGCGGGGGT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt < 1:2679802/147‑1 (MQ=255) cTGCACCGCCGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTT‑CTCCCTCTCCGTGGGGTTGCGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt < 2:3502983/150‑1 (MQ=255) cgCACCTACGCGCCGTCAGAAAATGTTTTC‑TTATGTTGGTTTTCCGCCCTC‑CCCGGTGGGTATGGGCCCGGGTGGTGGCCATCAGCGAGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtt < 2:4488152/149‑1 (MQ=255) gccccGACGCGACGGACTAAAACGTTTTCGTCTGGTTGGTTTA‑CCCCCACACCCTGGGGGAGCGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAttc < 1:5055744/147‑2 (MQ=255) gCACCGACGCGACGGACTAAAATTTATTCGTAGGGTTGTTTTA‑CCCCCACGCCCTGTGGGATAGGGCCGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAttt < 1:5055723/150‑1 (MQ=255) gCACCGACGCCCGGCAAGAAAAGGTATTCTTATGTTTTGTTTT‑CCCCCACGCCGGGTGGTTGTGGGCGGGGGT‑GAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAttt < 2:3144277/150‑1 (MQ=255) gccgcgccgCACTAAAATTTTTTCTTATGTTTGTTTTT‑CGCCCCCTCCGGGTGGGTGTGGGCCGGGGT‑GTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgaga < 1:3598330/148‑1 (MQ=255) acgcgacgGACTAAAATTTATTCGTAAGGTTGGTTTT‑CGCCCTCTCCGTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgagag < 2:4048407/150‑1 (MQ=38) acggacgAAAAAGTTTTCGTAAGGTGGGTTTT‑CACCCTCTCCCTGGGGGTGTGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtc < 2:1818506/150‑1 (MQ=39) gactAAAAAGTATGGTTAGGGTTGTTTTT‑CTCCCGCTCCGTGGGGGTGGGGGCGGGGGT‑GAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttc < 1:4963261/150‑1 (MQ=255) aaaaaGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCACACCCAAAACCACTCCCACAACGGCGCGGGGTCCGAACCAGCACCAAATTTTAGAGGTAtattcttct > 2:740927/1‑150 (MQ=21) taacgTATTCTTACGGTTGTTTTT‑CTCCCTCACCGGGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTg < 2:2247071/146‑1 (MQ=38) gTATTCGTATGGTTGGTTTT‑CTCCCTCTCCGTGTGGGAGTGGGCGGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:5430706/150‑1 (MQ=255) ttggTATGGTTGGTTTT‑CTCCCTCGCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTa < 2:5056077/147‑1 (MQ=255) ttggTATGGTGGGTTTG‑CGCCCTCCCCCGGGGGGTGTGGGCCGGGGG‑GGGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTa < 2:3228227/147‑1 (MQ=255) ttCGTATGGTGGGTTTT‑CCCCCACCCCCGGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTa < 2:5056040/150‑1 (MQ=39) gTATGGTGGTTTTT‑CTCCCTCGCCGGGTGGGTGTGGGCGGGGGT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 2:2886830/150‑1 (MQ=255) ttgtttTG‑CCCCCTCGCGGTGGGGGTGTGGGCGGGGGT‑GCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 2:5159177/150‑1 (MQ=255) tgttttt‑CTCCCTCTCCGGGTGGGTGTGGGCGGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 1:429135/147‑1 (MQ=255) ggttttt‑CACCCCCCCCGTGTGGGTTTGGGCGGGGGT‑GAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 1:3194799/147‑1 (MQ=255) gggttTT‑CCCCCCCCCCCTGGGGGAGTGGCCGGGGTT‑CCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 2:1456595/149‑1 (MQ=255) ccctcgccgtGGGGGTGGGGGGGGGGGT‑GCGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCg < 2:2008920/150‑1 (MQ=255) tctcccgGGGGTAGTGGGCGGGGGT‑GTGGGCCTCAGCGCGCCCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGc < 2:2379744/150‑1 (MQ=255) ccctGTGGGCGTGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 2:3672325/150‑1 (MQ=255) gtggtttgggCCGGGGTGGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcg < 1:334799/143‑1 (MQ=255) gtggggggCGGGGGG‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:3312028/145‑1 (MQ=255) ggtgtgggCGGGGGT‑GTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:4143990/145‑1 (MQ=255) tgggggCGGGGGT‑GCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGa < 1:451563/147‑1 (MQ=255) gtgggCCGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGaa < 1:5243845/148‑1 (MQ=255) cgggCGGGGGT‑GGGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAat < 2:2084920/149‑1 (MQ=255) cgggCCGGGTT‑CAGGCCCTCAGCGCGCACGTTCACCCTCACCCTACCCCTCTCCCTCAAGGGAGAGGGGACCGATCGATCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAat < 2:2085135/149‑1 (MQ=255) gCCGGGGT‑GCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt < 2:2629342/150‑1 (MQ=255) cgggggT‑GCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 2:1241688/148‑1 (MQ=255) ggT‑GCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:289022/150‑1 (MQ=255) gtgggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAATATCGGGCTTTTGCGCCTGAATATTGCGGAGaa < 1:1285949/148‑1 (MQ=255) gtgggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGATCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaa < 1:1285722/148‑1 (MQ=255) aTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCa < 2:3323797/150‑1 (MQ=255) | CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTT‑CTCCCTCTCCCTGTGGGAGAGGGCCGGGGT‑GAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160920‑161217 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |