| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,453,434 | C→A | 6.2% | Q87K (CAA→AAA) | gspF → | general secretory pathway component, cryptic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,453,434 | 0 | C | A | 6.2% | 911.3 / 2.9 | 261 | Q87K (CAA→AAA) | gspF | general secretory pathway component, cryptic |
| Reads supporting (aligned to +/- strand): ref base C (159/74); new base A (2/26); total (161/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.76e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 277 total aligned reads displayed.
TCCTGCTGGATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAAGAGC > CP009273/3453285‑3453583 | tCCTGCTGGATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTc > 1:1313559/1‑150 (MQ=255) ccTGCTGGATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTca > 2:3971809/1‑150 (MQ=255) tgctgGATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTcaac < 1:165722/150‑1 (MQ=255) ggATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAg > 1:793393/1‑150 (MQ=255) ggATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAg > 2:5001812/1‑150 (MQ=255) gATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGc < 2:515274/150‑1 (MQ=255) gATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGc > 1:4969207/1‑150 (MQ=255) atatTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCa > 2:4292273/1‑150 (MQ=255) gCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGtaata < 1:1675074/150‑1 (MQ=255) cccccAAAACAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGtaataa < 2:5387791/150‑1 (MQ=255) ccccAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGCACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATaaa < 1:4676917/150‑1 (MQ=255) ccAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACg < 2:2727986/150‑1 (MQ=255) aaaaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGAc > 1:3574845/1‑150 (MQ=255) aaaaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGAc < 1:2130080/150‑1 (MQ=255) aaaaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGAc > 2:3299353/1‑150 (MQ=255) aaaaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGAc < 2:4341235/150‑1 (MQ=255) aaaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACt > 1:3998745/1‑150 (MQ=255) aaaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACt > 1:380806/1‑150 (MQ=255) aaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTg < 2:2856572/150‑1 (MQ=255) aaaGTTCGGGAGTAAAAACACGTCGCCTGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTgg > 1:1837446/1‑150 (MQ=255) tCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGAc > 1:5239525/1‑150 (MQ=255) cGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACg > 1:4327418/1‑150 (MQ=255) ttataaaaaaCACGTCGCCCTAGTACCAGCATTTTTTAACTGCCGTTTATCACCCGCATTTTGTAAAATTTAAGCGCAGCGTATTTA‑CCCCTTT‑AATAGAGCTTTGCCTTAATGGTTAAAAAAAGAATTAATAAACGACTGGGTGACgtg < 2:775277/145‑1 (MQ=255) gAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACgtgt > 2:106230/1‑150 (MQ=255) attAAAAACCCGGCGCCCGTGTTTCAGCCTTTGTTAACGGCCGCTTTTCCCCGGGCTGTTGGCAACCTTACGCGCCGCGGCATTA‑CCCGTGT‑ATGTGAGCGTTGCCTTATTGGGTCAAAAACGCTTTAATAAACGACTGGGTGACGTGtt < 2:2483770/148‑1 (MQ=255) tAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTaa > 1:3173042/1‑150 (MQ=255) tAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTaa > 1:5427403/1‑150 (MQ=255) aaaaaCACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTaaa > 1:2629929/1‑150 (MQ=255) aaaaCACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAAt > 1:3556679/1‑150 (MQ=255) gTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTAc > 1:4191011/1‑150 (MQ=255) gCCCGAGCAACAGCCATTGTGAACGGCCGCTTTCCACCCGGCTGTTGGAAACCTTACGCGCAGCGGAATTA‑CCCGTGG‑AAGAGAGCCTTGCCTTAATCGGAAAACAAAGCAGTAATACACGACTGGGTGACGTGTTAAATCAGGTACGCa < 2:1964939/150‑1 (MQ=255) gAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAgcgc > 1:975535/1‑150 (MQ=255) tCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATcc > 2:1606268/1‑150 (MQ=255) tCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATcc > 1:4505033/1‑150 (MQ=255) tCAGCAATAGTGAACTGACGCTTTTCACCCGGATGTGGGCAACATTAAGCGCAGGGGATTTA‑CCCCTGT‑AAGATAGCCTTGCGTTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATcc < 2:2698597/150‑1 (MQ=255) aGCCATTGTGAACTGACGCTTTTCACCGGGCTTTTGGAAACCTTAAGCGCTGCGGAATTC‑CCCCTGT‑AAGAGAGCCTTGCCGTAATCGGTCAAAAAAGCATTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCtt < 2:1798503/150‑1 (MQ=255) aGCAATTGTGAACTTACGATTTTCACCCGGCAGTTGGCAACCTTAAGCGCCGCGGAATTA‑CCCCTGT‑AAGAGAGCCTTGCCTTAATCGTTCAACAAAGCATTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCtt < 2:4563239/150‑1 (MQ=255) ccATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGa > 1:646727/1‑150 (MQ=255) ctttgTGACCTGACGCTTTTCACCCGGCTGTTGGCACCCTTACGCGCAGCGGCATTC‑CCCCTGG‑AAGAGAGCCTTGCCGTAATGGGTCAACAAAGCAGTAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGaa < 2:367413/146‑1 (MQ=255) cATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGaa > 1:5155529/1‑150 (MQ=255) aTAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAg > 2:3023656/1‑150 (MQ=255) aTAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAg > 1:2645142/1‑150 (MQ=255) gTGAACGGCCGCTTTTCCCCGGGCAGTGGGCAACCTTACGCGCCGCGGCATTC‑CCCCTGT‑ACGAGCGCCTTGCGTTACTGGGTCAACAACGCTGAAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGc < 2:3410658/150‑1 (MQ=255) gAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGcct > 2:4453889/1‑148 (MQ=255) gAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCAt > 2:4151307/1‑150 (MQ=255) aaCTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATc > 1:2703865/1‑150 (MQ=255) aaCTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATc > 1:2881999/1‑150 (MQ=255) gccGCTTTACACCCGCCTGTTGGCAACCTAACGCGCCGCGGCATTC‑CCCCTGT‑AATAGCGCCTTGCCGAAATGGTACACAAAAGCAGTAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCt < 2:3165360/148‑1 (MQ=255) gACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCt > 2:4373470/1‑150 (MQ=255) aCGCTTTTCCCCCGGCAGTTGGCAACCTTAAGCGCCGCGGAATCA‑CCCCGGG‑AAGATAGCCTTGCCTTAAGCGTTCAAAAAAGCATTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCtt < 2:3450603/150‑1 (MQ=255) gttttCCCCCGGCTGTTGCCAACCTTACCCGCCGCGGCTTTC‑CCCCGGT‑AAGAGAGCCTTGCCTTAATCGGACAACAAACAATAAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTcc < 2:4244616/149‑1 (MQ=255) cTTTTCACCCGGCTGTTGGCAACCTTACGCGCCGCGGCTTTA‑CCCCTGG‑AAGAGAGCCTGGCCGAAATCGGAAAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTcc < 2:2189425/150‑1 (MQ=255) cTTTACCCCCGGCTGTTGGCAACCTTAAGCGCCGCGGAATTC‑CCCCTGT‑ATGAGCGCCTGGCCTTAATCGGAAAAAAACGCATTAAAACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTcc < 2:4644154/150‑1 (MQ=255) attttCCCCCGGGGTTTGGCACCCTTCCGCGCGGCGGCATCC‑CCCCGGG‑ACGAGCGCCTGGCCGTAAGCGGACAACAACGCAGTCATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTcc < 1:3103334/149‑1 (MQ=255) ttCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGAt > 2:2098283/1‑150 (MQ=255) ccccgggCTGTTGTCAACCTTACGCGCCGCGGAATAC‑CCCCTGT‑AATTGAGCTTTCCCGTAATCGGACAAAAACGAATAAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGc < 1:3365533/145‑1 (MQ=255) aCCGGGCTGTTGCCAACCTTACGCGCCGCGGAATAC‑CCCCTGC‑ATGACAGCTTTGCCTTAATGGGAAAAAAACGCTTTAAAACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCa < 1:3226213/150‑1 (MQ=255) aCCCGGCTTTGGGCAACATTACGCGCCGCGGATTAA‑CCCCTGT‑ATGAGAGCCTTGCCTAAATCGGAAAAAAAAGCAGTAAAAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCa < 1:459815/150‑1 (MQ=255) cccGGCTGTTGGCAACCTTACGCGCAGCGGCATTA‑CCCCTGT‑AAGAGAGCAGTGCCGTAATGGTTAAACAAAGCATTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCAt < 2:1335112/150‑1 (MQ=255) cccGGCAGTTGGCAACCTTAAGCGCAGCGTCATTC‑CCCCTGG‑AAGAGAGCGTGGCCTTAATCGTACAACAAAGCATAAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCAt < 2:4190728/150‑1 (MQ=255) cgaGTTGGCACCATTCCGCGCCGCGGCATAC‑CCCCTGC‑ACGAGCGCCTGGCCGTAATGGGACAACACAGCTGTAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACa < 1:387746/148‑1 (MQ=255) gTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGTTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCTATGCATTACAGCa > 2:2316127/1‑150 (MQ=255) gTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCCTCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCa > 2:2235961/1‑150 (MQ=255) ttGCCAACTTTACGCGCCGCGG‑ATTACCCCCTGT‑ATGTGAGCCTTGCGTTATTCGGAAAACAAACCATTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCAt < 1:4995125/150‑1 (MQ=255) gtGGAAACATTAAGCGCAGCGGCTTTC‑CCCCTGG‑AATAGAGCCTTGCCGTATTGGGACAAAAAAGCATAAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCAt < 2:4022059/149‑1 (MQ=255) gaaaCCTTCCGCGCCGCGGCA‑TA‑CCCCGGGTAAGAGCGCCTGGCCTTAAGCGGACAACAAAGCAGTAAAACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCAtttt < 1:4053431/148‑1 (MQ=255) gCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCAtttt > 2:2324741/1‑150 (MQ=255) gCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCAtttt > 2:4394620/1‑150 (MQ=255) ccAACCTTAAGCGCCGCGGCATAA‑CCCGTGG‑AAGAGCGCCTGGCCTTAATCGGTCAACAAAGCATAAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCAtttt < 1:1289359/149‑1 (MQ=255) cAACCTTAAGCGCAGCGGCATTA‑ACCCTGG‑AATAGAGCCTTGACGTAATCTGTAAACAAAGAAGTAATAAACGACTGGGTGACGTGTTAAATAAGGTACGCAGCGCCATCCTTTAAGGGCATCCCATTTCCGATGCATTAAAGCATTTTc > 2:1934636/1‑150 (MQ=255) aaCATTACGCGCCGCGGATTCC‑CCCCTGG‑ATGAGAGCCTTCCCTTAATCGTAAAAAAAACCATAAAAACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTcc < 1:2226471/150‑1 (MQ=255) cTTATGCGCCGCGGCATTA‑CCCCTGG‑AATAGAGCCTGGCGGTAATGGTTCAACAAAGCAGTAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCAc < 2:4531521/150‑1 (MQ=255) cTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCAc > 1:187956/1‑150 (MQ=255) tAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGc > 2:5241046/1‑150 (MQ=255) cgccggggCATTA‑CCCGTGG‑ATGTGCGCCTGGCCTTACTGGGACAACAAAGCTTTAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCtttt < 2:608169/144‑1 (MQ=255) aGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCCTCCCCTGTCCGATGCATTACAGCATTTTCCCACGCTTTTCGa > 1:1112068/1‑150 (MQ=255) aGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGa > 1:5329459/1‑150 (MQ=255) aGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGa > 1:1111945/1‑150 (MQ=255) cGGAATTA‑CCCCTGT‑AAGATAGCCTTGCCTTAATCGTTCAAAAAAGCATTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGAtt < 2:1730339/150‑1 (MQ=255) ggCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTc > 2:3712354/1‑150 (MQ=255) ggCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTc > 1:2038655/1‑150 (MQ=255) gCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCg > 2:1456415/1‑150 (MQ=255) cATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGc > 2:2611164/1‑150 (MQ=255) cATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGc > 1:4143195/1‑150 (MQ=255) ccccTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTAt > 1:2077246/1‑150 (MQ=255) cccTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATc > 2:2643374/1‑150 (MQ=255) ccggg‑AAGAGAGCGTGGCCGTAATCGGACAACAACGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCg < 2:3075363/147‑1 (MQ=255) tGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTCTCGTa > 2:86014/1‑150 (MQ=255) tGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTa > 2:3172182/1‑150 (MQ=255) gtaaGAGAGCCTTGCCTTAATCGTTAAACAAAGCAGTAATACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTAc < 2:3605548/148‑1 (MQ=255) aaGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTAccc > 1:553548/1‑150 (MQ=255) agagagCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCt > 2:190753/1‑150 (MQ=255) gagagCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTg > 2:481373/1‑150 (MQ=255) agagCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTgg > 1:4546138/1‑150 (MQ=255) gCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTaa > 2:3636758/1‑150 (MQ=255) gCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTaa > 2:3101882/1‑150 (MQ=255) gCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTaa > 2:5253766/1‑150 (MQ=255) aaTCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGa > 2:4715757/1‑150 (MQ=255) cGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGaaaa > 2:539335/1‑150 (MQ=255) gcacaacaaACAATTAAAACACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAag < 1:2125828/147‑1 (MQ=255) | TCCTGCTGGATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTA‑CCCCTGG‑AAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATAAACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAAGAGC > CP009273/3453285‑3453583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |