Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 5,144 G→A 100% intergenic (+124/‑90) thrC → / → yaaX L‑threonine synthase/DUF2502 family putative periplasmic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092735,1440GA100.0% 578.6 / NA 177intergenic (+124/‑90)thrC/yaaXL‑threonine synthase/DUF2502 family putative periplasmic protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (95/82);  total (95/82)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 178 total aligned reads displayed.

ATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCA  >  CP009273/4999‑5288
                                                                                                                                                 |                                                                                                                                                
aTTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAAt                                                                                                                                                <  1:412916/148‑1 (MQ=255)
aTTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAAt                                                                                                                                                <  1:1236670/148‑1 (MQ=255)
 ttGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAAtg                                                                                                                                               >  1:2399688/1‑147 (MQ=255)
  tgatgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTa                                                                                                                                              <  2:1668809/148‑1 (MQ=255)
  tgatgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTa                                                                                                                                              >  1:2238089/1‑148 (MQ=255)
  tgatgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTa                                                                                                                                              <  2:2583551/148‑1 (MQ=255)
  tgatgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTa                                                                                                                                              <  2:1055959/148‑1 (MQ=255)
   gatgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAg                                                                                                                                             >  1:1371214/1‑148 (MQ=255)
   gatgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAg                                                                                                                                             >  1:2835552/1‑148 (MQ=255)
     tgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGa                                                                                                                                           <  1:1345587/148‑1 (MQ=255)
     tgatgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGa                                                                                                                                           <  2:1134707/148‑1 (MQ=255)
        tgaATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCTCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTg                                                                                                                                        <  2:2850127/148‑1 (MQ=255)
           atcatcAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCgg                                                                                                                                     >  2:832354/1‑148 (MQ=255)
            tcatcaGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGga                                                                                                                                    >  1:449934/1‑148 (MQ=255)
              ttcaGTAAAATATATTCATTATCTCAATCATGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATTAAGAAATTATGGAGAAAAATGACCGGGAACAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGgaga                                                                                                                                  <  1:1995936/147‑1 (MQ=255)
              atcaGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGgaga                                                                                                                                  >  1:3290551/1‑148 (MQ=255)
              atcaGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGgaga                                                                                                                                  <  1:1184695/148‑1 (MQ=255)
               tcaGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGaa                                                                                                                                 >  1:2766142/1‑148 (MQ=255)
               tcaGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGaa                                                                                                                                 <  1:1532563/148‑1 (MQ=255)
               tcaGTAAAATCTATTCATTATCTCAATAAGGCCGGGTTTGCTTTTATGCAGCCCGTCATTTTTATGACGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTATCAATAAATTCGGTAACTTATAAAAAAGGATTGTGGAGaa                                                                                                                                 >  1:2861481/1‑148 (MQ=255)
                   tAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATaac                                                                                                                             >  1:3000528/1‑148 (MQ=255)
                    aaaaTCTATTCATTATCTCAATCAGGCCGTGTTTTCTTTTATGCAGCACGTATTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATaaca                                                                                                                            <  2:1037524/148‑1 (MQ=255)
                     aaaTCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATaacaa                                                                                                                           <  2:1023637/148‑1 (MQ=255)
                       aTCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAAcc                                                                                                                         >  1:1140059/1‑148 (MQ=255)
                         cTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAAccgc                                                                                                                       >  1:2346885/1‑148 (MQ=255)
                             tCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGtt                                                                                                                   <  2:1379104/148‑1 (MQ=255)
                                ttATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTtctc                                                                                                                >  1:3102/1‑148 (MQ=255)
                                  aTCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCAt                                                                                                              >  1:3248107/1‑148 (MQ=255)
                                    ctcAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCg                                                                                                            >  2:312128/1‑148 (MQ=255)
                                     tcAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGa                                                                                                           <  2:873787/148‑1 (MQ=255)
                                      cAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTCACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAg                                                                                                          >  2:1158490/1‑148 (MQ=255)
                                      cAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAg                                                                                                          >  2:434802/1‑148 (MQ=255)
                                            ggCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAAtct                                                                                                    >  1:2909204/1‑148 (MQ=255)
                                            ggCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAAtct                                                                                                    >  1:1118237/1‑148 (MQ=255)
                                                gggTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCgg                                                                                                >  2:1716493/1‑148 (MQ=255)
                                                  gTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGat                                                                                              >  1:2561531/1‑148 (MQ=255)
                                                  gTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGat                                                                                              >  2:162047/1‑148 (MQ=255)
                                                    ttGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGatat                                                                                            >  1:2737898/1‑148 (MQ=255)
                                                     tGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATc                                                                                           >  2:1189389/1‑148 (MQ=255)
                                                         tttATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGAcc                                                                                       <  2:1051900/148‑1 (MQ=255)
                                                              gCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATaa                                                                                  <  1:1556420/148‑1 (MQ=255)
                                                                aGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACg                                                                                <  2:2238089/148‑1 (MQ=255)
                                                                 gCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTTATCGAGTAATCTCCGGATATCGACCCATAACgg                                                                               <  2:1656975/148‑1 (MQ=255)
                                                                 gCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACgg                                                                               <  2:2038691/148‑1 (MQ=255)
                                                                    cGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCa                                                                            >  1:2243677/1‑148 (MQ=255)
                                                                      gCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAAt                                                                          >  2:1282110/1‑148 (MQ=255)
                                                                      gCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAAt                                                                          <  1:1716493/148‑1 (MQ=255)
                                                                       cTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATg                                                                         <  1:1292494/148‑1 (MQ=255)
                                                                        ttttttATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGa                                                                        >  2:1466630/1‑148 (MQ=255)
                                                                         tttttATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGAt                                                                       >  2:2453887/1‑148 (MQ=255)
                                                                             tATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATaaaa                                                                   <  2:963866/148‑1 (MQ=255)
                                                                                gaagaaATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGa                                                                >  1:824750/1‑148 (MQ=255)
                                                                                 aataaaTTATGTAGAAAAATGACAGGGAAAATGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAg                                                               <  1:991152/145‑1 (MQ=255)
                                                                                  agaaATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGt                                                              <  1:344999/148‑1 (MQ=255)
                                                                                   gaaATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTa                                                             <  2:3260797/148‑1 (MQ=255)
                                                                                       ttATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCt                                                         >  1:799223/1‑148 (MQ=255)
                                                                                       ttATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCt                                                         >  1:1905263/1‑148 (MQ=255)
                                                                                         aTGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGTAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCtgt                                                       <  2:1030426/148‑1 (MQ=255)
                                                                                             agaAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGaaa                                                   >  2:207844/1‑148 (MQ=255)
                                                                                               aaaaaTGACAGGTAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGaaaaa                                                 <  1:2699601/148‑1 (MQ=255)
                                                                                               aaaaaTGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGaaaaa                                                 >  1:752048/1‑148 (MQ=255)
                                                                                               aaaaaTGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATAGACCCAAAACGGGCCATGAGAAAAGGAGTAACCTCTGaaaaa                                                 >  2:2941825/1‑148 (MQ=255)
                                                                                                  aaTGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACGACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt                                              >  1:3200750/1‑148 (MQ=255)
                                                                                                  aaTGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt                                              >  2:2006657/1‑148 (MQ=255)
                                                                                                  aaTGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGAt                                              >  2:214243/1‑148 (MQ=255)
                                                                                                   aTGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATg                                             >  1:2376296/1‑148 (MQ=255)
                                                                                                   aTGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATg                                             <  1:434765/148‑1 (MQ=255)
                                                                                                     gACAGTGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCa                                           <  2:1791803/148‑1 (MQ=255)
                                                                                                     gACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCa                                           <  2:2096236/148‑1 (MQ=255)
                                                                                                     gACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCa                                           <  2:1418448/148‑1 (MQ=255)
                                                                                                       cAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAAt                                         <  2:2381365/148‑1 (MQ=255)
                                                                                                       cAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAAt                                         >  1:24237/1‑148 (MQ=255)
                                                                                                          ggAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTa                                      >  2:1792644/1‑148 (MQ=255)
                                                                                                          ggAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTa                                      <  2:620147/148‑1 (MQ=255)
                                                                                                             aaaaGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCg                                   <  2:1343486/148‑1 (MQ=255)
                                                                                                              aaaGGAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGt                                  >  1:1672794/1‑148 (MQ=255)
                                                                                                                 ggAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACt                               <  2:2316925/148‑1 (MQ=255)
                                                                                                                 ggAGAAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACt                               >  2:2697514/1‑148 (MQ=255)
                                                                                                                   agaAATTCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCg                             >  1:1000618/1‑148 (MQ=255)
                                                                                                                        ttCTCAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACtt                        >  1:1039007/1‑148 (MQ=255)
                                                                                                                         tctcAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACttt                       >  1:755166/1‑148 (MQ=255)
                                                                                                                         tctcAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACttt                       <  2:2909204/148‑1 (MQ=255)
                                                                                                                          ctcAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTc                      >  1:1481259/1‑148 (MQ=255)
                                                                                                                           tcAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTcc                     <  2:2243695/148‑1 (MQ=255)
                                                                                                                           tcAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTcc                     >  1:320862/1‑148 (MQ=255)
                                                                                                                           tcAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTcc                     >  1:294680/1‑148 (MQ=255)
                                                                                                                            cAATAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTccc                    <  2:1118237/148‑1 (MQ=255)
                                                                                                                              aTAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTg                  >  2:2799276/1‑148 (MQ=255)
                                                                                                                              aTAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTg                  >  1:2459567/1‑148 (MQ=255)
                                                                                                                               tAAATGCGGTAACTTAGAAATTATGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGAGATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTgg                 <  2:2529382/148‑1 (MQ=255)
                                                                                                                               tAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTgg                 <  2:1355107/148‑1 (MQ=255)
                                                                                                                               tAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTgg                 >  1:1654463/1‑148 (MQ=255)
                                                                                                                               tAAATGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTgg                 <  2:2399688/148‑1 (MQ=255)
                                                                                                                                 aaTGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGtt               <  2:1140059/148‑1 (MQ=255)
                                                                                                                                   tGCGGTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCt             >  1:698158/1‑148 (MQ=255)
                                                                                                                                       gTAACTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTc         >  1:3310337/1‑148 (MQ=255)
                                                                                                                                          aCTTAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCt      >  1:2343815/1‑148 (MQ=255)
                                                                                                                                             tAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTccc   >  1:674216/1‑148 (MQ=255)
                                                                                                                                             tAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTccc   >  1:674104/1‑148 (MQ=255)
                                                                                                                                             tAGAAATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTccc   >  1:1551991/1‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                                
ATTGATGATGAATCATCAGTAAAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAATTATGGAGAAAAATGACAGGGAAAAAGGAGAAATTCTCAATAAATGCGGTAACTTAGAGATTAGGATTGCGGAGAATAACAACCGCCGTTCTCATCGAGTAATCTCCGGATATCGACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCA  >  CP009273/4999‑5288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑