| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,135,838 | A→C | 11.2% | Y171D (TAC→GAC) | hybC ← | hydrogenase 2, large subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,135,838 | 0 | A | C | 11.2% | 519.5 / 66.3 | 215 | Y171D (TAC→GAC) | hybC | hydrogenase 2, large subunit |
| Reads supporting (aligned to +/- strand): ref base A (67/124); new base C (7/17); total (74/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.27e-01 | |||||||||||
Only 100 of 215 total aligned reads displayed.
CGCCAGGTTCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTTTGGTTGGGTCAGCTTGCAGTG > CP009273/3135692‑3135984 | gCCAGGTTCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGc < 2:3027771/148‑1 (MQ=255) gCCAGGTTCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGc < 2:3027505/148‑1 (MQ=255) ccAGGTTCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGcc < 2:641454/148‑1 (MQ=255) gTTCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTa > 2:1396543/1‑148 (MQ=255) ttCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAg < 1:2175137/148‑1 (MQ=255) ttCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAg > 1:1554129/1‑148 (MQ=255) ttCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAg > 1:2422361/1‑148 (MQ=255) ttCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAg > 1:589526/1‑148 (MQ=255) tCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGc > 1:1029042/1‑148 (MQ=255) aaTGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGaaa < 1:1995847/148‑1 (MQ=255) aaTGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGaaa < 1:1995474/148‑1 (MQ=255) aaTGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGaaa < 1:2683904/148‑1 (MQ=255) aTGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTANTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGaaaa < 1:1681457/148‑1 (MQ=255) aTGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGaaaa > 2:2724148/1‑148 (MQ=255) tgCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATAc < 1:3066320/148‑1 (MQ=255) tgCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATAc < 1:821952/148‑1 (MQ=255) tgCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATAc < 2:3119393/148‑1 (MQ=255) gcggcgTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATAcc < 2:929811/148‑1 (MQ=255) cggcgTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATAccc > 1:205068/1‑148 (MQ=255) cggcgTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATAccc > 1:1096847/1‑148 (MQ=255) gcgTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCaa < 2:33433/148‑1 (MQ=255) ttttACCGCCCAGCAGCGCCACGACGCGGTTACCCACACGCAGCCACCCCCCCGCGGGCCGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTg < 2:1514923/148‑1 (MQ=255) tttACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGa < 2:2419190/148‑1 (MQ=255) tttACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGa > 1:58148/1‑148 (MQ=255) tttACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGACAGTTTCATCGCCGGATGACCCCAGTAGCCAGTAGCGAAAATACCCAACTGa > 1:1476209/1‑148 (MQ=255) tACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGAcc < 2:2507574/148‑1 (MQ=255) cccAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTgg < 1:662095/148‑1 (MQ=255) cccAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTgg > 1:269482/1‑148 (MQ=255) gcgcCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAg < 1:3042636/148‑1 (MQ=255) gcgcCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCCTTCGCGAAAATACCCAACTGACCGCTGGCAACCAg > 2:2632594/1‑148 (MQ=255) gcgcCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAg < 1:1316975/148‑1 (MQ=255) cgcCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGa > 1:92077/1‑148 (MQ=255) gcCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGAt < 1:1375677/148‑1 (MQ=255) gcCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGAt < 1:300998/148‑1 (MQ=255) gcCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGAt < 1:1968132/148‑1 (MQ=255) cACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCt < 1:1640222/148‑1 (MQ=255) cgGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCt < 2:2899539/148‑1 (MQ=255) gTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTg > 2:1012366/1‑148 (MQ=255) gTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTg < 1:67906/148‑1 (MQ=255) gTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTg < 1:1744505/148‑1 (MQ=255) ttAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGt > 2:2064587/1‑148 (MQ=255) ttAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGt < 2:1209234/148‑1 (MQ=255) tAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGtt > 1:1891049/1‑148 (MQ=255) gTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGa < 2:1006531/148‑1 (MQ=255) gTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGa < 2:3136083/148‑1 (MQ=255) cACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAAc > 1:3012260/1‑148 (MQ=255) cACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAAc < 2:3017789/148‑1 (MQ=255) aCGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACt < 1:1515123/148‑1 (MQ=255) aCGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACt < 2:1040408/148‑1 (MQ=255) cGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACtt < 2:2067961/148‑1 (MQ=255) cTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTg < 1:3116552/148‑1 (MQ=255) tGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTgg < 1:2769526/148‑1 (MQ=255) gCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTg > 2:3276661/1‑148 (MQ=255) aCTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGaa < 1:2290620/148‑1 (MQ=255) tCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAAct > 1:2159803/1‑148 (MQ=255) tCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAAct > 1:986234/1‑148 (MQ=255) aaCGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCtt < 2:1811048/148‑1 (MQ=255) aCGCTTGCAGGGAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTc < 2:388964/148‑1 (MQ=255) tGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGAc > 1:245392/1‑148 (MQ=255) cAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTg < 1:806137/148‑1 (MQ=255) aGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGt < 1:2128148/148‑1 (MQ=255) ggTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGtt < 1:2804369/148‑1 (MQ=255) ggTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGtt > 2:453388/1‑148 (MQ=255) ggTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGtt > 2:818819/1‑148 (MQ=255) gTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTc < 1:386138/148‑1 (MQ=255) tGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGt > 1:28402/1‑148 (MQ=255) cgcTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGc > 2:1559005/1‑148 (MQ=255) ccGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGt < 1:1770698/148‑1 (MQ=255) ccGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGt > 2:678423/1‑148 (MQ=255) cGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTc > 1:33879/1‑148 (MQ=255) aaTCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGaa < 1:3251575/148‑1 (MQ=255) cAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACg > 1:1006801/1‑148 (MQ=255) cAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACg > 1:2659336/1‑148 (MQ=255) cAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACg > 2:1089164/1‑148 (MQ=255) aGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGc < 1:2272152/148‑1 (MQ=255) ggTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGcc < 2:2854455/148‑1 (MQ=255) ttCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCtt < 1:1597014/148‑1 (MQ=255) tCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCttt < 2:3250271/148‑1 (MQ=255) cACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTCGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTc < 2:2031002/148‑1 (MQ=255) tCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCa > 2:2500064/1‑148 (MQ=255) tCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCa < 2:2517575/148‑1 (MQ=255) gcAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGa < 1:2866971/148‑1 (MQ=255) aGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCACCTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAgg < 2:2596381/148‑1 (MQ=255) aGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAgg < 1:2233310/148‑1 (MQ=255) aGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAgg < 1:2892352/148‑1 (MQ=255) aGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAgg < 2:2596141/148‑1 (MQ=255) gTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGc < 1:2948889/148‑1 (MQ=255) tttCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCt > 2:2789786/1‑148 (MQ=255) tttCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCt < 2:2340067/148‑1 (MQ=255) aTCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTttgg < 1:365225/148‑1 (MQ=255) aTCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTttgg < 1:365050/148‑1 (MQ=255) cGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTttggtt < 2:1554021/148‑1 (MQ=255) cGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTttggtt < 1:1226423/148‑1 (MQ=255) cGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTttggtt < 2:589526/148‑1 (MQ=255) ggATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTTTGGTTGGGt < 2:2682698/148‑1 (MQ=255) ggATGACCCCAGGAGCCATTAGCGACAATACCCCACTGACCGCTGGCAACCAGATCTGTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTTTGGTTGGGt < 2:214943/148‑1 (MQ=255) gATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTTTGGTTGGGTc > 1:426190/1‑148 (MQ=255) cccAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTTTGGTTGGGTCAGCTtg < 2:1679743/148‑1 (MQ=255) cccAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTTTGGTTGGGTCAGCTtg < 2:786058/148‑1 (MQ=255) cAGTAGCCATTAGCGAAAATACCCAACTGACCGCTTGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTTTGGTTGGGTCAGCTtgca < 1:325227/148‑1 (MQ=255) | CGCCAGGTTCTGAATGTGCGGCGTTTTACCGCCCAGCAGCGCCACGACGCGGTTAGCGTCACGCTGGCACTCCAACGCTTGCAGGTAGTGCGCTACCGCAATCAGGTTCACTTCCGGCGGCAGTTTCATCGCCGGATGACCCCAGTAGCCATTAGCGAAAATACCCAACTGACCGCTGGCAACCAGATCTTTGATCTTGTTCTGAACTTTGGTGAACTCTTCCGGACTGTTCAGGTGCCAGGTCGAAACGCCTTTCAGCATTTCGGAGGCTTTGGTTGGGTCAGCTTGCAGTG > CP009273/3135692‑3135984 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |