| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,662 | C→G | 11.1% | intergenic (‑275/+155) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,662 | 0 | C | G | 11.1% | 319.1 / 4.1 | 118 | intergenic (‑275/+155) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base C (76/26); new base G (2/12); total (79/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.12e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 119 total aligned reads displayed.
CAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGC > CP009273/3385515‑3385806 | cAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTcc > 1:2826382/1‑148 (MQ=38) gTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCt > 1:1768486/1‑148 (MQ=255) cggcggcgAAACCGCCTTAGCCGCCCTCGGTTTTTGTTCCTTTTGTCGGCCTCAAACCACCCACCGCGTCCCATCAGCCCACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:2303057/146‑1 (MQ=9) ggggctTAAACGCCTTAACCGACCTAGGTTTATGTCCCTTTTGTAGGCCTGATAAGACGAACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 2:1331992/146‑1 (MQ=14) gcgTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTTGGCCTGATAAGACGc > 1:2253329/1‑148 (MQ=255) gcgTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc > 1:590222/1‑148 (MQ=255) gcgTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc > 1:590219/1‑148 (MQ=255) gTAACCGCCTTAGCCGCCCGAGGGTTTTGTCCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac < 2:2093746/148‑1 (MQ=14) aCGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCg > 1:2893636/1‑148 (MQ=255) ccTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 2:2795768/1‑148 (MQ=255) accGACCTACGGTTATGTTCCGTTGGTCGGCCTGATAAGACGCCCAGCGGCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa < 2:166885/147‑1 (MQ=255) aCCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa > 1:1816614/1‑148 (MQ=37) ccTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa > 2:3116633/1‑148 (MQ=35) ccTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa > 2:3116625/1‑148 (MQ=35) tttttGTTCGTTTTGTCGGCGTTATAAGACGCACGCGGGCGCATCTGCCACGGGCTGCCGGTTGCGGCTTAAACGCC‑TTATCCGACCTCGGGTTTTGTGCGTTTTGTAGGCCTTATAAGACGCACAGCGTCGAAACAGGCAACGGCTg < 2:2392621/144‑1 (MQ=2) gTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 2:64470/1‑148 (MQ=35) gTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑ATATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 2:64460/1‑148 (MQ=25) ttATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCCTCAGTCAACGTCTGc > 2:2187414/1‑148 (MQ=255) ttATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 2:481433/1‑148 (MQ=35) ttATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 2:322473/1‑148 (MQ=35) tATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGcc > 2:1473922/1‑148 (MQ=35) tATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGcc > 1:372660/1‑148 (MQ=35) aTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCg > 2:109702/1‑148 (MQ=35) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGGTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGa > 2:1098627/1‑148 (MQ=25) ttCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:1171909/1‑148 (MQ=35) ttCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:3311633/1‑148 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATg > 1:797987/1‑148 (MQ=34) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgc > 1:2697500/1‑148 (MQ=33) ttttGTGGGCCGTATATGACGCCCAGCGTCGCATCCGGCACCGGCTGCCGCATGCGGGGTAAACGCC‑TTATCCGACCTACGGTTATTTTCCGTTTGTCGGCCTGATAAGACGCACAGCGTCGAATCAGGCAACGGCTGCCGGATgcgg < 2:544956/147‑1 (MQ=11) tttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggc > 2:2738470/1‑148 (MQ=32) tttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggc > 1:913499/1‑148 (MQ=32) tttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggc > 2:1008295/1‑148 (MQ=32) aGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGaa > 1:2871601/1‑148 (MQ=34) ggCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGGAGGCCGGATAAGACGCACAGCGTCGCCTCAGGCACCGGCTGCCGGATGCGGCGTGAAc > 2:1729533/1‑148 (MQ=11) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTCCGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 2:1729535/1‑148 (MQ=21) gCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg > 2:1033091/1‑148 (MQ=34) cttaTAAGACGCCCTGCGTCGAATCAGGCAACGGCTGCCGGATGCGGCGTAACCCCC‑TTATCCGACCTAGGGTTATGTTCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 2:1654706/145‑1 (MQ=11) tGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGGGACCGccc > 2:3059572/1‑148 (MQ=21) tGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAAGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGccc > 2:3059528/1‑148 (MQ=25) tGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACATACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGccc > 2:3059524/1‑148 (MQ=25) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCt > 1:366284/1‑148 (MQ=35) aTAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa > 2:1856956/1‑148 (MQ=37) aTAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCAGTTTGTAGGCCTGATAAGACGCACAGAGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTa > 2:3272063/1‑148 (MQ=255) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATc > 1:2237937/1‑148 (MQ=37) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATc > 1:2013765/1‑148 (MQ=37) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTc > 1:371066/1‑148 (MQ=37) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTc > 1:369978/1‑148 (MQ=37) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTc > 2:695044/1‑148 (MQ=37) acagcccaCGGCTGCCGTATGCGGCGTAACCGCC‑TCACCCCCCCAACGTTTATGTTCCGTTTGTTGGCCTGATAAGACGCACAGCGTGGCACCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTc < 2:2748084/141‑1 (MQ=11) cAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTGTGTAGGCCTGATAAGACGCACAGCGACGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCt > 2:775340/1‑148 (MQ=255) ggCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTgg > 1:1475811/1‑148 (MQ=39) gCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCACGGCTGCCGGATGCGGCGTGAACGCCCTCTCCGACCTACGGTTATGTTCTGGc > 2:102364/1‑148 (MQ=255) gCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGc > 1:153620/1‑148 (MQ=40) gCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGc > 1:153619/1‑148 (MQ=40) gCAACGGCTGCCGGATGCGGCGTAAACGAC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGc > 2:184312/1‑148 (MQ=255) cAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCt > 1:1356275/1‑148 (MQ=40) acgggggCCGGATGCGGC‑TAAACCCCATTACCCGACATAGGGTTATGTTCCGTTTGTCGGCCTCAAAACACCCCCACCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCg < 1:2962019/142‑1 (MQ=14) cGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGt > 2:688882/1‑148 (MQ=255) cgcttGCGGCCAACACGCC‑TGCCCCCACCTCCGGTAATGGCCGGTTTTTCGCCCGGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCtt < 2:1165714/144‑1 (MQ=14) cGGATGCGGCGTAAACGCC‑TTAACCCCCCTCCGGTTATGTTCCGTTTTTCGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCtt < 2:1531214/148‑1 (MQ=14) tggcggggTAAACGCC‑TTAGCCGACCTACGGTTATGTTCCGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTgg < 2:2619376/146‑1 (MQ=255) aTGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTgg > 1:988241/1‑148 (MQ=255) cggcgTAACCCCC‑TTCTCCGACCTTCGTTTTTGTCCCGTTTGTAGCCCTTAAAAGACCCACCGCGTCGCATCTGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCaa < 2:1151303/148‑1 (MQ=17) cggccTAAACCCC‑TAAACCGACCTAGGGTTTGGTCCGGTTTGACGGCCTGAAAAGACCAACAGCGACGCACCAGCCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCaa < 2:1150630/148‑1 (MQ=17) cgccgTAAACGCC‑TAATCCCCCCTACGGTTATGTCCCGTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCCGCCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCaa < 2:1151316/145‑1 (MQ=17) cttAACCGCC‑TTCGCCGACCTCGGGTTATGTGCCGTTTGTCGGCCTGATAAGCCGCCCCGCGCCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGa < 2:1768486/146‑1 (MQ=17) cgTAAACCCC‑TGATCCGACCTCCGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGGGTCGCTTCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGa < 2:2104185/148‑1 (MQ=17) aaaCGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTa > 1:1881505/1‑148 (MQ=255) aaaCGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTa > 1:1881624/1‑148 (MQ=255) accGCC‑TTACCCGCCCTACGTTTTTGTCCTTTTTGTCGGCGTTATAAGACGCACCGCGTCCAACCAGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTAt < 1:109702/146‑1 (MQ=18) ccccc‑TTACCCCACCTACGTTTATGTTCCGTTTGTCGGCCTGATACGACCCCCCGCGTCGCAACAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATc < 2:1176141/145‑1 (MQ=18) ccGCC‑TGATCCGACCTACGGTTTTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATc < 2:2042442/147‑1 (MQ=255) aCGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATc > 2:1236245/1‑148 (MQ=255) aCGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATc > 1:2146534/1‑148 (MQ=255) cGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATcc > 2:2208127/1‑148 (MQ=255) cGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATcc > 2:1439996/1‑148 (MQ=255) cGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATcc > 1:539374/1‑148 (MQ=255) gCC‑TAATCCGACCTTCGTTTTTGTGCGGTTTGTTGGCCTTATACCACCCCCCGCGTCGCATCAGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCt < 1:3116633/148‑1 (MQ=18) cc‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTa > 2:2238449/1‑148 (MQ=255) cc‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTa > 2:2238497/1‑148 (MQ=255) tactCCGACCTCCGGTTTTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATg < 2:2016458/145‑1 (MQ=255) aTCCGCCCTCCGGTTAGGTTCCGTTTGTCGGCCTGATAAGACGCCCCGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATgag < 2:2016069/148‑1 (MQ=18) tCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATgaga > 1:2947814/1‑148 (MQ=255) ccGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGAt > 2:1611334/1‑148 (MQ=255) gACCTAGGTTTATTTCCCGTTGGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTg < 2:1049950/148‑1 (MQ=21) aCCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 2:1817328/84‑1 (MQ=33) cctggggTTTTGTTCGGTTTGTCGGCCTTATACGCCCCACCGCGTCGCCACAGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTggg < 1:2860561/143‑1 (MQ=21) caaggtttATGTACCGTTTGTAGGCCTGATAAGACGCACCCCGTCGCATCCGGAAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTgggg < 1:521029/142‑1 (MQ=21) aCGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGACGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCa > 1:3092800/1‑148 (MQ=255) ggTTTTGTGCGGTTTGTAGCACTGATAAGCCGCCCCCCGGCCCAACAGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAAt < 1:2789581/148‑1 (MQ=21) gTTTTGTTCGTTTTTTCGGCCTTATAAGAGGCACAGGGTCTCATCAGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAAtt < 1:3196001/148‑1 (MQ=21) gtATGTTCCGTTTGTAGGCCTGATAATACGCACAGCGTCGCATCAGGCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTAGGCCTGTGGCAACGATTATCGTATGTGATTGGGGCATTTa > 2:2103390/2‑148 (MQ=18) tATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTAc > 1:209571/1‑148 (MQ=255) tATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTAc > 1:492314/1‑148 (MQ=255) aTGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTAcg > 1:746920/1‑148 (MQ=255) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCGTTGGCCACGATTCTCCTATGAGATTGGGGCAATTAcgc > 2:2448534/1‑148 (MQ=255) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTGTGGCAACGATTATCCTCTGAGATTGGGGCACTTAcgcg > 2:1098660/1‑148 (MQ=255) ttCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACgcgc > 2:350792/1‑148 (MQ=255) ttCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACgcgc > 2:1953491/1‑148 (MQ=255) ttCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACgcgc > 2:1952488/1‑148 (MQ=255) | CAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCC‑TTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGC > CP009273/3385515‑3385806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |