Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,646,984 G→T 89.5% pseudogene (394/483 nt) yhiS → pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,646,9840GT89.5% 702.9 / 73.7 274pseudogene (394/483 nt)yhiSpseudogene
Reads supporting (aligned to +/- strand):  ref base G (11/18);  new base T (119/126);  total (130/144)
Fisher's exact test for biased strand distribution p-value = 3.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 274 total aligned reads displayed.

TAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTT  >  CP009273/3646839‑3647128
                                                                                                                                                 |                                                                                                                                                
tAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTaa                                                                                                                                                <  2:2603644/148‑1 (MQ=255)
   aGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTaaaaa                                                                                                                                             >  2:2798465/1‑148 (MQ=255)
    gCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAg                                                                                                                                            <  2:875579/148‑1 (MQ=255)
    gCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAg                                                                                                                                            >  2:1380517/1‑148 (MQ=255)
     ccTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGa                                                                                                                                           >  2:1973116/1‑148 (MQ=255)
       tttACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGata                                                                                                                                         >  2:1024438/1‑148 (MQ=255)
       tttACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGata                                                                                                                                         >  1:1386764/1‑148 (MQ=255)
       tttACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGata                                                                                                                                         <  1:1556906/148‑1 (MQ=255)
          aCGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATaa                                                                                                                                      <  1:1100472/148‑1 (MQ=255)
          aCGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATaa                                                                                                                                      >  1:2543796/1‑148 (MQ=255)
           cGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATaaa                                                                                                                                     <  1:1826901/148‑1 (MQ=255)
            gACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCATAATTAAAGAGGCCCCTGCCAAATTAAAAAGTTATAAAt                                                                                                                                    >  1:3010505/1‑148 (MQ=255)
              cacTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTa                                                                                                                                  >  2:815613/1‑148 (MQ=255)
               acTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTAt                                                                                                                                 <  2:3100679/148‑1 (MQ=255)
               acTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTAt                                                                                                                                 >  2:327264/1‑148 (MQ=255)
               acTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTAt                                                                                                                                 >  1:1346695/1‑148 (MQ=255)
                ctctCCCGATACAATAAAATTCAAACCTGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATg                                                                                                                                <  1:1919428/148‑1 (MQ=255)
                ctctCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATg                                                                                                                                >  2:2088201/1‑148 (MQ=255)
                  ctcCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATggg                                                                                                                              <  1:2447477/148‑1 (MQ=255)
                  ctcCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATggg                                                                                                                              >  1:2781855/1‑148 (MQ=255)
                       gATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGga                                                                                                                         <  2:2502414/148‑1 (MQ=255)
                       gATAAAATAAAATTCAAACATGTTCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGga                                                                                                                         <  1:124837/148‑1 (MQ=255)
                         tACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaa                                                                                                                       >  2:1053087/1‑148 (MQ=255)
                                aaaTTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaatagaaat                                                                                                                <  1:1643154/148‑1 (MQ=255)
                                 aaTTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaatagaaata                                                                                                               <  1:1007820/148‑1 (MQ=255)
                                 aaTTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaatagaaata                                                                                                               <  2:1502331/148‑1 (MQ=255)
                                 aaTGCAAACATGGGCATAAATGTATTAATATAAATCCTAATTATTACAATACTAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGgaaatagaaata                                                                                                               <  2:3010505/148‑1 (MQ=255)
                                  aTTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATATAAATAc                                                                                                              >  2:1291394/1‑148 (MQ=255)
                                    tCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCa                                                                                                            <  1:688131/148‑1 (MQ=255)
                                     cAAACATGGTCAGAAATGTCTTAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCATTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCAt                                                                                                           <  2:224999/148‑1 (MQ=255)
                                     cAAACATGGGCAGAAATGTCTGAATGTCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCAt                                                                                                           <  2:225711/148‑1 (MQ=255)
                                     cAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCAt                                                                                                           <  2:2856656/148‑1 (MQ=255)
                                       aaCATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCt                                                                                                         >  2:1709861/1‑148 (MQ=255)
                                        aCATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTg                                                                                                        >  1:1547967/1‑148 (MQ=255)
                                        aCATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTg                                                                                                        >  1:3030485/1‑148 (MQ=255)
                                        aCATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTg                                                                                                        <  1:1475740/148‑1 (MQ=255)
                                                aGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGa                                                                                                <  1:198113/148‑1 (MQ=255)
                                                 gAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGaa                                                                                               >  2:5283/1‑148 (MQ=255)
                                                  aaaTGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAAt                                                                                              >  1:2125320/1‑148 (MQ=255)
                                                   aaTGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAAtt                                                                                             >  2:2223740/1‑148 (MQ=255)
                                                       tCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCt                                                                                         >  1:3276119/1‑148 (MQ=255)
                                                       tCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCt                                                                                         >  1:1638517/1‑148 (MQ=255)
                                                       tCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCt                                                                                         <  1:3162668/148‑1 (MQ=255)
                                                       tCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCt                                                                                         <  2:2725035/148‑1 (MQ=255)
                                                          gAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTAt                                                                                      <  1:51804/148‑1 (MQ=255)
                                                          gAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTAt                                                                                      <  1:2627792/148‑1 (MQ=255)
                                                            atatCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCa                                                                                    >  1:175451/1‑148 (MQ=255)
                                                              atCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCaaa                                                                                  >  2:2251480/1‑148 (MQ=255)
                                                              atCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCaaa                                                                                  >  1:852836/1‑148 (MQ=255)
                                                               tCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAAt                                                                                 <  2:1585257/148‑1 (MQ=255)
                                                                   ttCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCAtt                                                                             >  2:1778305/1‑148 (MQ=255)
                                                                   ttCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCAtt                                                                             <  2:706491/148‑1 (MQ=255)
                                                                         gTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGa                                                                       <  2:2035830/148‑1 (MQ=255)
                                                                          tATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGaa                                                                      >  2:2673681/1‑148 (MQ=255)
                                                                           aTTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAat                                                                     <  1:3064291/148‑1 (MQ=255)
                                                                              tCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAAtata                                                                  <  1:985683/148‑1 (MQ=255)
                                                                              tCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAAtata                                                                  <  2:1086208/148‑1 (MQ=255)
                                                                                 aTACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATataata                                                               >  1:876014/1‑148 (MQ=255)
                                                                                   aCGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATAcc                                                             <  2:1838714/148‑1 (MQ=255)
                                                                                    cGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCa                                                            <  2:753627/148‑1 (MQ=255)
                                                                                     gagaCGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCat                                                           <  1:3257612/148‑1 (MQ=255)
                                                                                        aCGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCataat                                                        >  2:707091/1‑148 (MQ=255)
                                                                                          gCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAatat                                                      <  1:2073596/148‑1 (MQ=255)
                                                                                          gCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAatat                                                      >  1:2323791/1‑148 (MQ=255)
                                                                                             tAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGa                                                   >  2:2758042/1‑148 (MQ=255)
                                                                                               aCCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGatt                                                 <  2:1238909/148‑1 (MQ=255)
                                                                                               aCCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATGACCAGAATATAACACCATAATATTGatt                                                 >  2:1660803/1‑148 (MQ=255)
                                                                                                  cAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGattatt                                              >  1:1627309/1‑148 (MQ=255)
                                                                                                  cAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGattatt                                              <  2:2889907/148‑1 (MQ=255)
                                                                                                   caaaaaaaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGAttatta                                             <  2:2765193/147‑1 (MQ=255)
                                                                                                   caaaaaaaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGAttatta                                             <  2:916349/147‑1 (MQ=255)
                                                                                                   aaaaaaaaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGAttatta                                             <  1:3288758/148‑1 (MQ=255)
                                                                                                      aaaaaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCa                                          >  2:1479294/1‑148 (MQ=255)
                                                                                                      aaaaaTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCa                                          >  2:592867/1‑148 (MQ=255)
                                                                                                          aTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACttt                                      <  1:251438/148‑1 (MQ=255)
                                                                                                          aTGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACttt                                      >  1:2224073/1‑148 (MQ=255)
                                                                                                           tGTCACACACTCATTATTTAAAGAGGCCAATGCCTAATTAAAAAGATATAAATTATGGGGTGTAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCTTTACCAGAATATAATACCTTAATATTGATTATTAGCACTTta                                     <  2:2482291/148‑1 (MQ=255)
                                                                                                           tGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTta                                     >  2:1266641/1‑148 (MQ=255)
                                                                                                            gTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTtat                                    >  1:2177814/1‑148 (MQ=255)
                                                                                                             tCACACACGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTtata                                   <  1:788426/148‑1 (MQ=255)
                                                                                                              cacacaCGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATaa                                  >  2:351607/1‑148 (MQ=255)
                                                                                                              cacacaCGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATaa                                  >  2:1002026/1‑148 (MQ=255)
                                                                                                               acacacGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAAt                                 <  2:2366468/148‑1 (MQ=255)
                                                                                                                cacacGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATc                                <  1:2024157/148‑1 (MQ=255)
                                                                                                                    cGCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTg                            >  2:1998003/1‑148 (MQ=255)
                                                                                                                     gCCTTATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGa                           >  2:2063950/1‑148 (MQ=255)
                                                                                                                        ttATTTAAAGAGGCCACTGCCTAATTAAAAGGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATa                        <  1:2567959/148‑1 (MQ=255)
                                                                                                                         tATTTAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATaa                       >  1:1042835/1‑148 (MQ=255)
                                                                                                                           tttAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATaaaa                     <  2:1386764/148‑1 (MQ=255)
                                                                                                                            ttAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTTATTATTAGCACTTTATAATCATTGAATaaaaa                    >  1:2663508/1‑148 (MQ=255)
                                                                                                                            ttAAAGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATaaaaa                    <  1:2349249/148‑1 (MQ=255)
                                                                                                                             tAAAGAGTCCACTGACTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAAt                   <  2:1821850/148‑1 (MQ=255)
                                                                                                                               aaGAGGCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAg                 <  1:2932095/148‑1 (MQ=255)
                                                                                                                                agagGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGa                <  2:2529191/148‑1 (MQ=255)
                                                                                                                                agagGACACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGa                <  2:3105291/148‑1 (MQ=255)
                                                                                                                                    gCCACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtttt            <  2:3191800/148‑1 (MQ=255)
                                                                                                                                     ccACTGCCTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTa           <  2:1591229/148‑1 (MQ=255)
                                                                                                                                         ttccTAATTAAAAAGATATAATTTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTACCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTa       <  1:1223591/146‑1 (MQ=255)
                                                                                                                                           ccTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACt     <  2:2988897/148‑1 (MQ=255)
                                                                                                                                           ccTAATTAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACt     >  1:2014786/1‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                                
TAAAGCCTTTACGACACTCTCCCGATACAATAAAATTCAAACATGGGCAGAAATGTCTGAATATCAATTCGAAGTATTTCAATACGAGACGCTTAACCCAAAAAAAATGTCACACACGCCTTATTTAAAGAGGCCACTGCCTAATGAAAAAGATATAAATTATGGGGTGGAAATAGAAATACCATCTGGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGTACTTTT  >  CP009273/3646839‑3647128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑