Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 309,680 C→T 7.9% intergenic (‑164/‑388) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273309,6800CT 7.9% 687.3 / 32.3 201intergenic (‑164/‑388)ykgP/eaeHpseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
Reads supporting (aligned to +/- strand):  ref base C (79/106);  new base T (8/8);  total (87/114)
Fisher's exact test for biased strand distribution p-value = 6.07e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

Only 100 of 207 total aligned reads displayed.

AAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATCTAT  >  CP009273/309533‑309827
                                                                                                                                                   |                                                                                                                                                   
aaGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATc                                                                                                                                                     <  2:1065040/148‑1 (MQ=255)
    aTAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATa                                                                                                                                                 >  1:1577272/1‑148 (MQ=255)
    aTAACGTAAAGCGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATa                                                                                                                                                 <  1:1780558/148‑1 (MQ=255)
          tAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAat                                                                                                                                           >  1:2986012/1‑148 (MQ=255)
           aaaGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAata                                                                                                                                          <  2:1326606/148‑1 (MQ=255)
           aaaGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAata                                                                                                                                          <  2:2462967/148‑1 (MQ=255)
            aaGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATTCATAAAAAatat                                                                                                                                         <  1:1618162/148‑1 (MQ=255)
                gAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTg                                                                                                                                     <  2:651755/148‑1 (MQ=255)
                gAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTg                                                                                                                                     <  1:1802196/148‑1 (MQ=255)
                gAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTg                                                                                                                                     <  2:2255720/148‑1 (MQ=255)
                gAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCAGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTg                                                                                                                                     >  2:2886568/1‑148 (MQ=255)
                   aaGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATTCATAAAAAATATATTGGtt                                                                                                                                  <  2:346152/148‑1 (MQ=255)
                   aaGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGtt                                                                                                                                  <  2:795264/148‑1 (MQ=255)
                    aGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGttt                                                                                                                                 >  1:1256715/1‑148 (MQ=255)
                     gCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTa                                                                                                                                >  1:2195260/1‑148 (MQ=255)
                      cTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTAt                                                                                                                               <  1:1142/148‑1 (MQ=255)
                      cTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTAt                                                                                                                               <  1:3302770/148‑1 (MQ=255)
                      cTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTAt                                                                                                                               <  2:152763/148‑1 (MQ=255)
                         gATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCt                                                                                                                            >  1:1216162/1‑148 (MQ=255)
                             aGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATTCATAAAAAATATATTGGTTTATCCTGGCa                                                                                                                        >  1:1277500/1‑148 (MQ=255)
                                   cAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCAtatata                                                                                                                  <  1:273553/148‑1 (MQ=255)
                                   cAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCAtatata                                                                                                                  <  1:273426/148‑1 (MQ=255)
                                     gAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATAcc                                                                                                                >  1:510574/1‑148 (MQ=255)
                                     gAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATAcc                                                                                                                <  1:1875890/148‑1 (MQ=255)
                                      aaTTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCt                                                                                                               <  1:157428/148‑1 (MQ=255)
                                      aaTTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCt                                                                                                               <  1:2970087/148‑1 (MQ=255)
                                       aTTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTa                                                                                                              <  1:2393009/148‑1 (MQ=255)
                                        tttGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTAt                                                                                                             >  1:462732/1‑148 (MQ=255)
                                        tttGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTAt                                                                                                             >  1:2519674/1‑148 (MQ=255)
                                         ttGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATTCATAAAAAATATATTGGTTTATCCTGGCATATATACCTAtt                                                                                                            >  1:2404389/1‑148 (MQ=255)
                                                gggTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGt                                                                                                     >  2:922047/1‑148 (MQ=255)
                                                 ggTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTa                                                                                                    <  1:2179977/148‑1 (MQ=255)
                                                 ggTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTa                                                                                                    >  1:166909/1‑148 (MQ=255)
                                                     aTGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTc                                                                                                >  2:2738019/1‑148 (MQ=255)
                                                     aTGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTc                                                                                                <  2:2683066/148‑1 (MQ=255)
                                                       gAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCa                                                                                              >  1:2307515/1‑148 (MQ=255)
                                                         aCGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAAt                                                                                            <  2:3181923/148‑1 (MQ=255)
                                                          cGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATa                                                                                           >  1:1455450/1‑148 (MQ=255)
                                                            aaaTTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGt                                                                                         >  1:1315803/1‑148 (MQ=255)
                                                              aTTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGttt                                                                                       <  2:1864463/148‑1 (MQ=255)
                                                              aTTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGttt                                                                                       <  2:1946458/148‑1 (MQ=255)
                                                              aTTCATAAATCTGGTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGttt                                                                                       >  2:1210288/1‑148 (MQ=255)
                                                                tCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTtta                                                                                     <  1:262382/148‑1 (MQ=255)
                                                                 cATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTttaa                                                                                    <  2:3086531/148‑1 (MQ=255)
                                                                  aTAAATCTGTTTGAGTGTTGCGATGGGTAGTTCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTttaat                                                                                   <  1:2878877/148‑1 (MQ=255)
                                                                    aaaTCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTttaatta                                                                                 <  2:2085195/148‑1 (MQ=255)
                                                                     aaTCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATTTCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATTCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTttaattaa                                                                                <  1:619466/148‑1 (MQ=255)
                                                                          gTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCa                                                                           >  2:167820/1‑148 (MQ=255)
                                                                          gTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCa                                                                           <  2:1430207/148‑1 (MQ=255)
                                                                            ttGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAgg                                                                         <  1:2095371/148‑1 (MQ=255)
                                                                              gAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTc                                                                       <  2:2366190/148‑1 (MQ=255)
                                                                                gtgtTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCAt                                                                     <  2:803873/148‑1 (MQ=255)
                                                                                    tGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGtt                                                                 <  2:883452/148‑1 (MQ=255)
                                                                                     gCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTa                                                                <  2:898629/148‑1 (MQ=255)
                                                                                           ggTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCAct                                                          >  2:702133/1‑148 (MQ=255)
                                                                                           ggTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCAct                                                          <  2:241880/148‑1 (MQ=255)
                                                                                            gTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCActc                                                         <  2:241704/148‑1 (MQ=255)
                                                                                               gTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGa                                                      >  2:2988338/1‑148 (MQ=255)
                                                                                                tGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATTCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGaa                                                     >  1:1550355/1‑148 (MQ=255)
                                                                                                tGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGaa                                                     >  2:1995139/1‑148 (MQ=255)
                                                                                                  cAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATa                                                   >  1:1800066/1‑148 (MQ=255)
                                                                                                  cAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATa                                                   >  1:2004406/1‑148 (MQ=255)
                                                                                                   aaGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAg                                                  <  1:167820/148‑1 (MQ=255)
                                                                                                    aGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGt                                                 >  2:1662626/1‑148 (MQ=255)
                                                                                                     gTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTg                                                >  2:3206927/1‑148 (MQ=255)
                                                                                                     gTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTg                                                >  2:374886/1‑148 (MQ=255)
                                                                                                      ttCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGa                                               <  1:1501577/148‑1 (MQ=255)
                                                                                                          atatCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAatta                                           >  2:2392960/1‑148 (MQ=255)
                                                                                                           tatCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAattat                                          <  1:1061993/148‑1 (MQ=255)
                                                                                                           tatCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAattat                                          <  1:930013/148‑1 (MQ=255)
                                                                                                              ctcCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCa                                       >  1:3032982/1‑148 (MQ=255)
                                                                                                                  gCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGt                                   <  1:259985/148‑1 (MQ=255)
                                                                                                                  gCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCAGATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGt                                   <  2:2500052/148‑1 (MQ=255)
                                                                                                                     aTTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCg                                >  2:518613/1‑148 (MQ=255)
                                                                                                                        tACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCag                             >  1:1362163/1‑148 (MQ=255)
                                                                                                                        tACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCag                             >  1:738903/1‑148 (MQ=255)
                                                                                                                           aGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGt                          >  1:450/1‑148 (MQ=255)
                                                                                                                             tCCGATGAAGGAAAATGAATATTCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTaa                        >  2:490850/1‑148 (MQ=255)
                                                                                                                             tCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTaa                        >  2:1991489/1‑148 (MQ=255)
                                                                                                                             tCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTaa                        <  2:2240546/148‑1 (MQ=255)
                                                                                                                                gATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGaa                     <  1:356268/148‑1 (MQ=255)
                                                                                                                                gATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGaa                     >  1:1150947/1‑148 (MQ=255)
                                                                                                                                gATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGaa                     <  1:2023054/148‑1 (MQ=255)
                                                                                                                                   gAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAata                  >  1:1832200/1‑148 (MQ=255)
                                                                                                                                   gAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAata                  <  1:3015211/148‑1 (MQ=255)
                                                                                                                                   gAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAata                  <  2:2689059/148‑1 (MQ=255)
                                                                                                                                      ggAAAATGAATATTCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATaa               >  1:840868/1‑148 (MQ=255)
                                                                                                                                       gAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAAc              <  2:2978349/148‑1 (MQ=255)
                                                                                                                                       gAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAAc              >  1:3060754/1‑148 (MQ=255)
                                                                                                                                          aaTGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTa           >  1:653889/1‑148 (MQ=255)
                                                                                                                                             taaTATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTAGTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGt        <  2:2009207/147‑1 (MQ=255)
                                                                                                                                               atatCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTAt      <  2:418956/148‑1 (MQ=255)
                                                                                                                                                tatCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATc     <  1:2990633/148‑1 (MQ=255)
                                                                                                                                                tatCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATc     <  1:1342584/148‑1 (MQ=255)
                                                                                                                                                tatCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATc     <  1:1995258/148‑1 (MQ=255)
                                                                                                                                                tatCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATc     <  2:537054/148‑1 (MQ=255)
                                                                                                                                                tatCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATc     <  2:537016/148‑1 (MQ=255)
                                                                                                                                                tatCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATc     <  2:2199133/148‑1 (MQ=255)
                                                                                                                                                   ccATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATCTAt  <  2:1250353/148‑1 (MQ=255)
                                                                                                                                                   ccATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATCTAt  <  2:1997497/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGATATCTCCGCAATTTACAGTCCGATGAAGGAAAATGAATATCCATAAAAAATATATTGGTTTATCCTGGCATATATACCTATTTCGACGTATTTCCAATAGTTTTAATTAAAGGCAGGTCATTGTTATTCACTCTGAATAGTGAATTATTCACTGTCCGCAGAGTAAGAAATATAACTTAGGTATCTAT  >  CP009273/309533‑309827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: